Wall clock time and date at job start Tue Mar 31 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81400 * 109.47039 * 2 1 4 4 C 1.81399 * 107.16520 * 295.33455 * 3 2 1 5 5 O 1.42096 * 113.54437 * 61.53761 * 3 2 1 6 6 N 1.49359 * 107.52113 * 179.97438 * 3 2 1 7 7 C 1.31227 * 120.00207 * 180.02562 * 6 3 2 8 8 O 1.22280 * 119.99790 * 359.97438 * 7 6 3 9 9 C 1.48544 * 120.00541 * 179.97438 * 7 6 3 10 10 C 1.39748 * 119.81672 * 359.72160 * 9 7 6 11 11 C 1.36373 * 120.17961 * 179.71847 * 10 9 7 12 12 C 1.41240 * 119.81961 * 0.57621 * 11 10 9 13 13 C 1.40434 * 120.18102 * 179.67584 * 12 11 10 14 14 H 1.08003 * 119.99587 * 205.23784 * 13 12 11 15 15 C 1.46471 * 120.00141 * 25.23345 * 13 12 11 16 16 N 1.29540 * 119.99578 * 12.55653 * 15 13 12 17 17 Si 1.86794 * 120.00399 * 192.55245 * 15 13 12 18 18 H 1.48510 * 109.46989 * 60.00092 * 17 15 13 19 19 H 1.48497 * 109.47652 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47091 * 300.00740 * 17 15 13 21 21 C 1.41251 * 119.64184 * 359.70328 * 12 11 10 22 22 C 1.36381 * 119.81262 * 359.97438 * 21 12 11 23 23 H 1.09000 * 109.46844 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47130 * 300.00144 * 1 2 3 25 25 H 1.09000 * 109.46535 * 60.00683 * 1 2 3 26 26 H 1.09008 * 109.46912 * 119.99803 * 2 1 3 27 27 H 1.08999 * 109.47523 * 239.99341 * 2 1 3 28 28 H 1.09000 * 109.46900 * 66.20359 * 4 3 2 29 29 H 1.09001 * 109.46784 * 186.19717 * 4 3 2 30 30 H 1.08999 * 109.47214 * 306.20004 * 4 3 2 31 31 H 1.07999 * 119.90601 * 359.97438 * 10 9 7 32 32 H 1.08011 * 120.09305 * 180.25890 * 11 10 9 33 33 H 0.97001 * 119.99983 * 179.97438 * 16 15 13 34 34 H 1.08005 * 120.09171 * 179.97438 * 21 12 11 35 35 H 1.08001 * 119.90404 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 1.6139 2.4622 -1.5665 5 8 1.7386 2.4524 1.1452 6 7 3.6274 1.6595 0.0006 7 6 4.3219 2.7729 0.0013 8 8 3.7468 3.8521 0.0009 9 6 5.8064 2.7225 0.0025 10 6 6.4597 1.4871 0.0088 11 6 7.8223 1.4321 0.0042 12 6 8.5735 2.6282 0.0053 13 6 9.9770 2.5805 0.0074 14 1 10.5449 3.4077 0.4070 15 6 10.6708 1.4088 -0.5323 16 7 10.0171 0.5318 -1.2264 17 14 12.4980 1.1790 -0.2198 18 1 12.7439 1.0995 1.2427 19 1 12.9574 -0.0753 -0.8683 20 1 13.2456 2.3308 -0.7854 21 6 7.9054 3.8727 0.0048 22 6 6.5421 3.9105 0.0028 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 1.8934 -0.5138 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 0.5269 2.5400 -1.5885 29 1 2.0512 3.4567 -1.6552 30 1 1.9507 1.8418 -2.3970 31 1 5.8838 0.5735 0.0133 32 1 8.3258 0.4766 0.0049 33 1 10.4766 -0.2440 -1.5841 34 1 8.4726 4.7919 0.0060 35 1 6.0298 4.8612 0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925835861.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:25 Heat of formation + Delta-G solvation = -43.197317 kcal Electronic energy + Delta-G solvation = -19288.146820 eV Core-core repulsion = 16185.119027 eV Total energy + Delta-G solvation = -3103.027793 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.60359 -38.80739 -37.39630 -35.53237 -34.31795 -34.18128 -31.97335 -31.19839 -30.26490 -27.57811 -25.25695 -23.80415 -22.61388 -21.52569 -19.41104 -19.14889 -17.95447 -17.60336 -17.16122 -17.08563 -16.34053 -15.67499 -15.63012 -15.02781 -14.83948 -14.61033 -14.27388 -14.14331 -13.89500 -13.83369 -13.65806 -13.44677 -13.22408 -12.92444 -12.79576 -12.58045 -12.39442 -12.25963 -11.75905 -11.75094 -11.28734 -11.12843 -10.82245 -10.66784 -10.59866 -9.46488 -9.38828 -8.79202 -6.39599 -1.49719 0.53995 1.25772 1.38641 1.41682 1.52485 1.57016 1.98401 2.17079 2.27299 2.73831 3.16777 3.57550 3.76834 3.83037 3.94754 4.05745 4.34330 4.44044 4.53484 4.61681 4.69845 4.78954 4.87194 4.92291 5.07586 5.18337 5.31274 5.39029 5.60028 5.68414 6.02091 6.06216 6.15463 6.23818 6.61900 6.76702 7.02224 7.35319 8.10373 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035269 B = 0.003836 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.717958 B = 7296.921911 C = 7811.616319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.444 4.444 3 S 2.247 3.753 4 C -0.608 4.608 5 O -0.996 6.996 6 N -1.133 6.133 7 C 0.588 3.412 8 O -0.651 6.651 9 C -0.286 4.286 10 C -0.029 4.029 11 C -0.220 4.220 12 C 0.097 3.903 13 C -0.483 4.483 14 H 0.086 0.914 15 C 0.035 3.965 16 N -0.776 5.776 17 Si 1.000 3.000 18 H -0.257 1.257 19 H -0.257 1.257 20 H -0.257 1.257 21 C -0.266 4.266 22 C -0.042 4.042 23 H 0.129 0.871 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.162 0.838 27 H 0.191 0.809 28 H 0.164 0.836 29 H 0.105 0.895 30 H 0.165 0.835 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.304 0.696 34 H 0.101 0.899 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.262 -10.239 -4.018 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.584 4.584 3 S 2.451 3.549 4 C -0.765 4.765 5 O -0.983 6.983 6 N -1.037 6.037 7 C 0.382 3.618 8 O -0.541 6.541 9 C -0.293 4.293 10 C -0.048 4.048 11 C -0.239 4.239 12 C 0.094 3.906 13 C -0.508 4.508 14 H 0.104 0.896 15 C -0.189 4.189 16 N -0.397 5.397 17 Si 0.818 3.182 18 H -0.181 1.181 19 H -0.181 1.181 20 H -0.181 1.181 21 C -0.285 4.285 22 C -0.061 4.061 23 H 0.147 0.853 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.180 0.820 27 H 0.209 0.791 28 H 0.182 0.818 29 H 0.124 0.876 30 H 0.183 0.817 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.464 -9.933 -3.417 18.695 hybrid contribution 0.626 0.811 -0.222 1.048 sum -14.838 -9.123 -3.640 17.794 Atomic orbital electron populations 1.22102 0.87670 1.08287 1.05096 1.28933 1.06944 1.05980 1.16509 1.14490 0.76603 0.83341 0.80487 1.29809 1.14202 1.13613 1.18876 1.93466 1.85704 1.71507 1.47587 1.69704 1.22901 1.42616 1.68496 1.17734 0.90246 0.82308 0.71473 1.90846 1.73010 1.33985 1.56269 1.19098 0.90989 0.94319 1.24846 1.20722 0.93885 0.96235 0.93988 1.21195 0.93036 0.98344 1.11349 1.18103 0.94207 0.91606 0.86686 1.21219 0.91605 1.02688 1.35327 0.89591 1.28455 1.06483 0.92985 0.90983 1.69162 1.42052 1.08796 1.19680 0.85006 0.73711 0.79301 0.80152 1.18105 1.18061 1.18057 1.20860 0.93449 0.97128 1.17078 1.20503 0.93926 0.96443 0.95274 0.85264 0.91235 0.88097 0.82035 0.79106 0.81797 0.87629 0.81667 0.85999 0.86571 0.88321 0.88051 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 9.88 71.98 0.71 0.17 16 2 C -0.44 -3.69 6.80 71.98 0.49 -3.20 16 3 S 2.25 58.24 3.89 -56.49 -0.22 58.02 16 4 C -0.61 -11.14 10.33 113.37 1.17 -9.97 16 5 O -1.00 -38.86 17.26 -132.77 -2.29 -41.16 16 6 N -1.13 -43.97 9.26 -180.63 -1.67 -45.64 16 7 C 0.59 29.96 7.31 87.54 0.64 30.60 16 8 O -0.65 -35.65 14.31 9.97 0.14 -35.50 16 9 C -0.29 -15.75 5.90 -19.80 -0.12 -15.87 16 10 C -0.03 -1.56 9.50 22.20 0.21 -1.35 16 11 C -0.22 -12.25 8.71 22.57 0.20 -12.05 16 12 C 0.10 5.55 5.62 -21.27 -0.12 5.43 16 13 C -0.48 -26.05 9.32 24.95 0.23 -25.81 16 14 H 0.09 4.43 7.96 -2.91 -0.02 4.41 16 15 C 0.04 1.68 5.40 87.18 0.47 2.15 16 16 N -0.78 -37.92 10.84 23.20 0.25 -37.67 16 17 Si 1.00 35.31 29.66 68.60 2.03 37.35 16 18 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 19 H -0.26 -8.24 7.11 99.48 0.71 -7.53 16 20 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 21 C -0.27 -14.86 9.76 22.58 0.22 -14.64 16 22 C -0.04 -2.35 9.52 22.20 0.21 -2.14 16 23 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 24 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.10 -0.17 7.68 -2.39 -0.02 -0.19 16 26 H 0.16 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.19 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.16 1.43 7.85 -2.39 -0.02 1.41 16 29 H 0.10 2.96 7.05 -2.39 -0.02 2.94 16 30 H 0.17 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.12 5.75 7.53 -2.91 -0.02 5.73 16 32 H 0.12 6.40 6.04 -2.91 -0.02 6.39 16 33 H 0.30 12.90 8.27 -92.71 -0.77 12.13 16 34 H 0.10 5.29 8.06 -2.91 -0.02 5.26 16 35 H 0.09 5.15 7.63 -2.91 -0.02 5.13 16 Total: -1.00 -92.29 313.36 3.66 -88.63 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 1.09 Total: 22.65 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 4.32 Total: -46.68 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -1.42 Total: -83.31 kcal Atomic # 8 Polarization: -74.51 SS G_CDS: -2.15 Total: -76.66 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.35 kcal Atomic # 16 Polarization: 58.24 SS G_CDS: -0.22 Total: 58.02 kcal Total: -92.29 3.66 -88.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925835861.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.436 kcal (2) G-P(sol) polarization free energy of solvation -92.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds