Wall clock time and date at job start Tue Mar 31 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 S 1.81395 * 109.47097 * 2 1 4 4 C 1.81397 * 107.16861 * 295.33656 * 3 2 1 5 5 O 1.42099 * 113.54549 * 61.54094 * 3 2 1 6 6 N 1.49361 * 107.52195 * 179.97438 * 3 2 1 7 7 C 1.31313 * 119.99972 * 179.97438 * 6 3 2 8 8 O 1.22259 * 120.00249 * 0.02562 * 7 6 3 9 9 C 1.48484 * 119.99735 * 179.97438 * 7 6 3 10 10 C 1.39847 * 119.97487 * 359.72848 * 9 7 6 11 11 C 1.38556 * 120.47725 * 179.76384 * 10 9 7 12 12 C 1.37538 * 120.43381 * 0.51212 * 11 10 9 13 13 C 1.41289 * 119.92862 * 359.74208 * 12 11 10 14 14 C 1.40377 * 120.23469 * 180.02562 * 13 12 11 15 15 H 1.08009 * 119.99605 * 25.17905 * 14 13 12 16 16 C 1.46538 * 120.00449 * 205.17602 * 14 13 12 17 17 N 1.29503 * 119.99765 * 12.43271 * 16 14 13 18 18 Si 1.86794 * 120.00160 * 192.43381 * 16 14 13 19 19 H 1.48501 * 109.47385 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47308 * 120.00240 * 18 16 14 21 21 H 1.48508 * 109.47213 * 240.00126 * 18 16 14 22 22 C 1.38539 * 119.97608 * 180.02562 * 9 7 6 23 23 H 1.09005 * 109.46689 * 300.00523 * 1 2 3 24 24 H 1.09001 * 109.46657 * 59.99936 * 1 2 3 25 25 H 1.08991 * 109.47420 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46657 * 120.00064 * 2 1 3 27 27 H 1.08996 * 109.46905 * 239.99501 * 2 1 3 28 28 H 1.08998 * 109.47066 * 66.19983 * 4 3 2 29 29 H 1.08999 * 109.47106 * 186.20295 * 4 3 2 30 30 H 1.08999 * 109.47120 * 306.20526 * 4 3 2 31 31 H 1.07999 * 119.75581 * 359.97438 * 10 9 7 32 32 H 1.08006 * 119.78022 * 180.25959 * 11 10 9 33 33 H 1.07999 * 120.03684 * 179.76809 * 12 11 10 34 34 H 0.96996 * 119.99916 * 179.97438 * 17 16 14 35 35 H 1.08003 * 120.20892 * 359.94962 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 1.6140 2.4623 -1.5664 5 8 1.7387 2.4523 1.1453 6 7 3.6275 1.6594 0.0006 7 6 4.3223 2.7736 0.0003 8 8 3.7474 3.8526 -0.0001 9 6 5.8063 2.7231 0.0015 10 6 6.4634 1.4886 0.0087 11 6 7.8476 1.4292 0.0050 12 6 8.5945 2.5842 0.0047 13 6 7.9490 3.8410 0.0027 14 6 8.7050 5.0239 0.0018 15 1 9.7094 5.0225 -0.3954 16 6 8.1315 6.2604 0.5397 17 7 7.0359 6.2198 1.2290 18 14 8.9807 7.8953 0.2311 19 1 10.2063 7.6718 -0.5771 20 1 8.0607 8.8001 -0.5038 21 1 9.3507 8.5138 1.5296 22 6 6.5390 3.8989 0.0016 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 0.5270 2.5401 -1.5884 29 1 2.0513 3.4567 -1.6551 30 1 1.9506 1.8418 -2.3970 31 1 5.8875 0.5749 0.0139 32 1 8.3434 0.4697 0.0065 33 1 9.6731 2.5304 0.0056 34 1 6.6565 7.0382 1.5853 35 1 6.0342 4.8537 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925846876.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:30 Heat of formation + Delta-G solvation = -9.959610 kcal Electronic energy + Delta-G solvation = -19542.865852 eV Core-core repulsion = 16441.279354 eV Total energy + Delta-G solvation = -3101.586498 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.98219 -36.76623 -36.18342 -33.79992 -33.46928 -32.74193 -29.97999 -29.41163 -29.18262 -24.95304 -24.62800 -22.84323 -20.61488 -19.60948 -18.09754 -17.39629 -16.45440 -16.23980 -15.85826 -15.28560 -14.86611 -14.60133 -14.06190 -13.61931 -13.57991 -13.49767 -13.09761 -12.91113 -12.82449 -12.70134 -12.37799 -12.08542 -11.78746 -11.47876 -11.05313 -10.95810 -10.86835 -10.49732 -10.26701 -9.96859 -9.53300 -9.34408 -9.21104 -9.13660 -8.88984 -7.39143 -7.26771 -6.70928 -4.16668 -0.64130 2.25995 2.61195 2.93256 3.10849 3.16056 3.17075 3.35589 3.74553 3.95674 4.04777 4.08111 4.39412 4.62818 4.69140 4.78279 4.85994 5.01720 5.14610 5.37179 5.68270 5.84434 6.05236 6.41147 6.81351 6.92203 7.01897 7.21094 7.38726 7.44490 7.66022 8.06618 8.12234 8.26069 8.30483 8.69863 8.91175 8.99277 9.14764 10.17206 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027034 B = 0.004654 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.484077 B = 6014.659997 C = 6766.031030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.497 4.497 3 S 2.284 3.716 4 C -0.631 4.631 5 O -0.922 6.922 6 N -1.106 6.106 7 C 0.592 3.408 8 O -0.586 6.586 9 C -0.095 4.095 10 C -0.196 4.196 11 C -0.108 4.108 12 C -0.221 4.221 13 C 0.095 3.905 14 C -0.473 4.473 15 H 0.081 0.919 16 C 0.071 3.929 17 N -0.761 5.761 18 Si 0.915 3.085 19 H -0.257 1.257 20 H -0.271 1.271 21 H -0.273 1.273 22 C -0.115 4.115 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.152 0.848 27 H 0.148 0.852 28 H 0.118 0.882 29 H 0.144 0.856 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.287 0.713 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 -10.969 -5.275 18.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.635 4.635 3 S 2.480 3.520 4 C -0.785 4.785 5 O -0.908 6.908 6 N -1.014 6.014 7 C 0.383 3.617 8 O -0.469 6.469 9 C -0.101 4.101 10 C -0.216 4.216 11 C -0.126 4.126 12 C -0.241 4.241 13 C 0.093 3.907 14 C -0.501 4.501 15 H 0.099 0.901 16 C -0.154 4.154 17 N -0.383 5.383 18 Si 0.739 3.261 19 H -0.181 1.181 20 H -0.196 1.196 21 H -0.199 1.199 22 C -0.136 4.136 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.170 0.830 27 H 0.166 0.834 28 H 0.136 0.864 29 H 0.162 0.838 30 H 0.147 0.853 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.912 -10.260 -4.393 17.835 hybrid contribution 0.053 0.865 -0.488 0.995 sum -13.859 -9.395 -4.881 17.440 Atomic orbital electron populations 1.21808 0.90167 1.06016 1.04056 1.28980 1.05536 1.15115 1.13825 1.13751 0.78667 0.79123 0.80479 1.30117 1.11563 1.15553 1.21313 1.93532 1.85457 1.67143 1.44679 1.70292 1.18707 1.44061 1.68359 1.18149 0.90774 0.81412 0.71399 1.90959 1.72205 1.32473 1.51256 1.19146 0.88764 0.95017 1.07220 1.20527 0.93320 0.95752 1.11993 1.20479 0.93822 0.96395 1.01908 1.21090 0.97454 0.92607 1.12956 1.17529 0.91479 0.92238 0.89469 1.20630 1.00783 0.91691 1.37037 0.90088 1.27452 0.94033 1.01547 0.92334 1.69134 1.16787 1.31083 1.21334 0.86158 0.80415 0.80339 0.79159 1.18087 1.19616 1.19858 1.21773 0.93785 0.96784 1.01237 0.90211 0.90814 0.88691 0.82982 0.83353 0.86353 0.83750 0.85272 0.87897 0.89364 0.89092 0.90054 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 9.88 37.16 0.37 -0.30 16 2 C -0.50 -3.08 6.80 37.16 0.25 -2.82 16 3 S 2.28 30.70 3.89 -107.50 -0.42 30.28 16 4 C -0.63 -6.53 10.33 101.05 1.04 -5.49 16 5 O -0.92 -17.68 17.26 -52.14 -0.90 -18.58 16 6 N -1.11 -21.02 9.27 29.48 0.27 -20.74 16 7 C 0.59 14.72 7.31 -13.55 -0.10 14.62 16 8 O -0.59 -15.82 14.32 -12.23 -0.18 -15.99 16 9 C -0.10 -2.56 5.87 -104.96 -0.62 -3.18 16 10 C -0.20 -4.80 9.59 -38.86 -0.37 -5.17 16 11 C -0.11 -2.58 10.01 -39.72 -0.40 -2.97 16 12 C -0.22 -5.74 9.80 -38.68 -0.38 -6.12 16 13 C 0.10 2.72 5.62 -106.84 -0.60 2.12 16 14 C -0.47 -13.19 9.32 -35.43 -0.33 -13.52 16 15 H 0.08 2.14 7.97 -52.48 -0.42 1.72 16 16 C 0.07 1.86 5.41 -15.19 -0.08 1.78 16 17 N -0.76 -21.17 10.84 55.98 0.61 -20.56 16 18 Si 0.92 19.37 29.66 -169.99 -5.04 14.32 16 19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 22 C -0.12 -3.37 8.30 -38.38 -0.32 -3.69 16 23 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.16 7.68 -51.93 -0.40 -0.23 16 25 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.15 0.87 8.14 -51.92 -0.42 0.45 16 27 H 0.15 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.12 0.78 7.85 -51.92 -0.41 0.37 16 29 H 0.14 2.04 7.05 -51.92 -0.37 1.67 16 30 H 0.13 0.94 8.14 -51.92 -0.42 0.51 16 31 H 0.10 2.25 7.53 -52.49 -0.40 1.85 16 32 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 34 H 0.29 7.23 8.27 -40.82 -0.34 6.89 16 35 H 0.13 4.11 5.62 -52.48 -0.29 3.82 16 LS Contribution 313.58 15.07 4.73 4.73 Total: -1.00 -39.84 313.58 -6.84 -46.68 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.37 Total: 4.63 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -1.53 Total: -24.76 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.88 Total: -41.31 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -1.08 Total: -34.57 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.04 Total: 14.32 kcal Atomic # 16 Polarization: 30.70 SS G_CDS: -0.42 Total: 30.28 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -39.84 -6.84 -46.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925846876.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.717 kcal (2) G-P(sol) polarization free energy of solvation -39.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds