Wall clock time and date at job start Tue Mar 31 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 S 1.81395 * 109.47097 * 2 1 4 4 C 1.81397 * 107.16861 * 295.33656 * 3 2 1 5 5 O 1.42099 * 113.54549 * 61.54094 * 3 2 1 6 6 N 1.49361 * 107.52195 * 179.97438 * 3 2 1 7 7 C 1.31313 * 119.99972 * 179.97438 * 6 3 2 8 8 O 1.22259 * 120.00249 * 0.02562 * 7 6 3 9 9 C 1.48484 * 119.99735 * 179.97438 * 7 6 3 10 10 C 1.39847 * 119.97487 * 359.72848 * 9 7 6 11 11 C 1.38556 * 120.47725 * 179.76384 * 10 9 7 12 12 C 1.37538 * 120.43381 * 0.51212 * 11 10 9 13 13 C 1.41289 * 119.92862 * 359.74208 * 12 11 10 14 14 C 1.40377 * 120.23469 * 180.02562 * 13 12 11 15 15 H 1.08009 * 119.99605 * 25.17905 * 14 13 12 16 16 C 1.46538 * 120.00449 * 205.17602 * 14 13 12 17 17 N 1.29503 * 119.99765 * 12.43271 * 16 14 13 18 18 Si 1.86794 * 120.00160 * 192.43381 * 16 14 13 19 19 H 1.48501 * 109.47385 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47308 * 120.00240 * 18 16 14 21 21 H 1.48508 * 109.47213 * 240.00126 * 18 16 14 22 22 C 1.38539 * 119.97608 * 180.02562 * 9 7 6 23 23 H 1.09005 * 109.46689 * 300.00523 * 1 2 3 24 24 H 1.09001 * 109.46657 * 59.99936 * 1 2 3 25 25 H 1.08991 * 109.47420 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46657 * 120.00064 * 2 1 3 27 27 H 1.08996 * 109.46905 * 239.99501 * 2 1 3 28 28 H 1.08998 * 109.47066 * 66.19983 * 4 3 2 29 29 H 1.08999 * 109.47106 * 186.20295 * 4 3 2 30 30 H 1.08999 * 109.47120 * 306.20526 * 4 3 2 31 31 H 1.07999 * 119.75581 * 359.97438 * 10 9 7 32 32 H 1.08006 * 119.78022 * 180.25959 * 11 10 9 33 33 H 1.07999 * 120.03684 * 179.76809 * 12 11 10 34 34 H 0.96996 * 119.99916 * 179.97438 * 17 16 14 35 35 H 1.08003 * 120.20892 * 359.94962 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 1.6140 2.4623 -1.5664 5 8 1.7387 2.4523 1.1453 6 7 3.6275 1.6594 0.0006 7 6 4.3223 2.7736 0.0003 8 8 3.7474 3.8526 -0.0001 9 6 5.8063 2.7231 0.0015 10 6 6.4634 1.4886 0.0087 11 6 7.8476 1.4292 0.0050 12 6 8.5945 2.5842 0.0047 13 6 7.9490 3.8410 0.0027 14 6 8.7050 5.0239 0.0018 15 1 9.7094 5.0225 -0.3954 16 6 8.1315 6.2604 0.5397 17 7 7.0359 6.2198 1.2290 18 14 8.9807 7.8953 0.2311 19 1 10.2063 7.6718 -0.5771 20 1 8.0607 8.8001 -0.5038 21 1 9.3507 8.5138 1.5296 22 6 6.5390 3.8989 0.0016 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 0.5270 2.5401 -1.5884 29 1 2.0513 3.4567 -1.6551 30 1 1.9506 1.8418 -2.3970 31 1 5.8875 0.5749 0.0139 32 1 8.3434 0.4697 0.0065 33 1 9.6731 2.5304 0.0056 34 1 6.6565 7.0382 1.5853 35 1 6.0342 4.8537 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925846876.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:30 Heat of formation + Delta-G solvation = -41.247379 kcal Electronic energy + Delta-G solvation = -19544.222591 eV Core-core repulsion = 16441.279354 eV Total energy + Delta-G solvation = -3102.943237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.75104 -38.71431 -37.44817 -35.48651 -34.37772 -34.22281 -31.95258 -31.24315 -30.28829 -26.89006 -25.55373 -24.34259 -22.63276 -21.30700 -19.68014 -18.92783 -17.74612 -17.58925 -17.20868 -16.99454 -16.40445 -15.89530 -15.73924 -15.02381 -14.89949 -14.70828 -14.36674 -14.22538 -14.14014 -13.87790 -13.49845 -13.39274 -12.97439 -12.89397 -12.80015 -12.44703 -12.39588 -12.07685 -11.88664 -11.78827 -11.45437 -11.14282 -10.91456 -10.74977 -10.68442 -9.43546 -9.31750 -8.69249 -6.28744 -1.54305 0.44508 1.07710 1.34058 1.43508 1.51832 1.52359 1.91429 2.16293 2.22857 2.72684 3.11547 3.55825 3.76499 3.81715 3.90311 4.02369 4.22396 4.37722 4.55103 4.68899 4.77813 4.83529 4.85819 4.99718 5.02837 5.18830 5.34788 5.36539 5.47916 5.62842 6.03154 6.09539 6.19920 6.27896 6.65212 6.82938 7.07172 7.19734 8.21331 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027034 B = 0.004654 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.484077 B = 6014.659997 C = 6766.031030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.435 4.435 3 S 2.238 3.762 4 C -0.608 4.608 5 O -0.998 6.998 6 N -1.122 6.122 7 C 0.580 3.420 8 O -0.632 6.632 9 C -0.118 4.118 10 C -0.188 4.188 11 C -0.102 4.102 12 C -0.231 4.231 13 C 0.065 3.935 14 C -0.512 4.512 15 H 0.087 0.913 16 C 0.024 3.976 17 N -0.806 5.806 18 Si 0.998 3.002 19 H -0.246 1.246 20 H -0.266 1.266 21 H -0.260 1.260 22 C -0.159 4.159 23 H 0.067 0.933 24 H 0.101 0.899 25 H 0.132 0.868 26 H 0.165 0.835 27 H 0.197 0.803 28 H 0.166 0.834 29 H 0.101 0.899 30 H 0.171 0.829 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.107 0.893 34 H 0.293 0.707 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.932 -14.307 -6.910 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.576 4.576 3 S 2.442 3.558 4 C -0.764 4.764 5 O -0.985 6.985 6 N -1.025 6.025 7 C 0.370 3.630 8 O -0.519 6.519 9 C -0.124 4.124 10 C -0.208 4.208 11 C -0.120 4.120 12 C -0.251 4.251 13 C 0.063 3.937 14 C -0.540 4.540 15 H 0.105 0.895 16 C -0.196 4.196 17 N -0.429 5.429 18 Si 0.817 3.183 19 H -0.169 1.169 20 H -0.191 1.191 21 H -0.185 1.185 22 C -0.180 4.180 23 H 0.086 0.914 24 H 0.119 0.881 25 H 0.151 0.849 26 H 0.183 0.817 27 H 0.215 0.785 28 H 0.184 0.816 29 H 0.120 0.880 30 H 0.189 0.811 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.299 -13.631 -6.002 21.352 hybrid contribution 0.213 1.600 -0.055 1.615 sum -15.086 -12.032 -6.057 20.225 Atomic orbital electron populations 1.22128 0.87715 1.08412 1.05073 1.28930 1.06818 1.04932 1.16873 1.14786 0.76599 0.83899 0.80495 1.29791 1.14331 1.13528 1.18774 1.93486 1.85609 1.71766 1.47623 1.69730 1.23031 1.41926 1.67827 1.18055 0.90690 0.82583 0.71678 1.90908 1.72915 1.34352 1.53719 1.19666 0.91168 0.95320 1.06215 1.20903 0.93948 0.95782 1.10156 1.20945 0.93660 0.97635 0.99719 1.21395 0.98521 0.92487 1.12651 1.17932 0.91623 0.93936 0.90183 1.20970 1.01380 0.93003 1.38601 0.89519 1.28532 0.94454 1.05484 0.91143 1.69253 1.18637 1.32468 1.22510 0.84948 0.79288 0.74517 0.79554 1.16878 1.19073 1.18484 1.21603 0.94556 0.96551 1.05305 0.91433 0.88070 0.84936 0.81748 0.78540 0.81634 0.88030 0.81121 0.84809 0.84745 0.87464 0.89560 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.39 9.88 71.98 0.71 0.32 16 2 C -0.44 -2.99 6.80 71.98 0.49 -2.50 16 3 S 2.24 58.03 3.89 -56.49 -0.22 57.81 16 4 C -0.61 -11.23 10.33 113.37 1.17 -10.05 16 5 O -1.00 -40.29 17.26 -132.81 -2.29 -42.58 16 6 N -1.12 -43.05 9.27 -180.50 -1.67 -44.72 16 7 C 0.58 30.64 7.31 87.51 0.64 31.28 16 8 O -0.63 -37.32 14.32 10.00 0.14 -37.17 16 9 C -0.12 -6.72 5.87 -20.08 -0.12 -6.84 16 10 C -0.19 -9.20 9.59 22.74 0.22 -8.98 16 11 C -0.10 -4.75 10.01 22.18 0.22 -4.53 16 12 C -0.23 -12.18 9.80 22.85 0.22 -11.95 16 13 C 0.07 3.95 5.62 -21.30 -0.12 3.83 16 14 C -0.51 -30.09 9.32 24.96 0.23 -29.86 16 15 H 0.09 4.78 7.97 -2.91 -0.02 4.75 16 16 C 0.02 1.32 5.41 87.20 0.47 1.79 16 17 N -0.81 -48.18 10.84 23.21 0.25 -47.93 16 18 Si 1.00 41.26 29.66 68.60 2.03 43.30 16 19 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 20 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 22 C -0.16 -10.06 8.30 23.05 0.19 -9.87 16 23 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 24 H 0.10 -0.25 7.68 -2.39 -0.02 -0.27 16 25 H 0.13 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.20 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.17 1.47 7.85 -2.39 -0.02 1.46 16 29 H 0.10 2.98 7.05 -2.39 -0.02 2.96 16 30 H 0.17 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.13 5.58 7.53 -2.91 -0.02 5.56 16 32 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 33 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 34 H 0.29 15.85 8.27 -92.71 -0.77 15.09 16 35 H 0.10 6.75 5.62 -2.91 -0.02 6.74 16 Total: -1.00 -101.89 313.58 3.67 -98.22 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 1.09 Total: 20.45 kcal Atomic # 6 Polarization: -51.70 SS G_CDS: 4.33 Total: -47.37 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -1.42 Total: -92.65 kcal Atomic # 8 Polarization: -77.60 SS G_CDS: -2.15 Total: -79.75 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 58.03 SS G_CDS: -0.22 Total: 57.81 kcal Total: -101.89 3.67 -98.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925846876.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.973 kcal (2) G-P(sol) polarization free energy of solvation -101.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds