Wall clock time and date at job start Tue Mar 31 2020 06:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47239 * 2 1 4 4 C 1.50695 * 109.47162 * 239.99445 * 2 1 3 5 5 H 1.08000 * 120.00347 * 275.00794 * 4 2 1 6 6 C 1.37879 * 119.99892 * 94.99941 * 4 2 1 7 7 N 1.31507 * 120.00472 * 184.91375 * 6 4 2 8 8 Si 1.86802 * 119.99928 * 4.92161 * 6 4 2 9 9 H 1.48497 * 109.47562 * 84.82991 * 8 6 4 10 10 H 1.48500 * 109.47279 * 204.83092 * 8 6 4 11 11 H 1.48498 * 109.47101 * 324.82856 * 8 6 4 12 12 N 1.46494 * 109.46982 * 119.99453 * 2 1 3 13 13 C 1.34783 * 120.00384 * 275.27567 * 12 2 1 14 14 O 1.21602 * 119.99668 * 359.72403 * 13 12 2 15 15 C 1.47401 * 119.99847 * 179.72846 * 13 12 2 16 16 C 1.40064 * 120.17164 * 269.99251 * 15 13 12 17 17 C 1.39135 * 119.71364 * 180.02562 * 16 15 13 18 18 C 1.38535 * 119.97286 * 359.97438 * 17 16 15 19 19 C 1.38391 * 120.43123 * 0.02562 * 18 17 16 20 20 C 1.38105 * 120.32186 * 359.72299 * 19 18 17 21 21 F 1.35102 * 120.04912 * 180.27502 * 20 19 18 22 22 O 1.36604 * 108.59414 * 180.02562 * 17 16 15 23 23 C 1.43994 * 105.43687 * 342.74404 * 22 17 16 24 24 O 1.36223 * 131.53971 * 0.03977 * 16 15 13 25 25 H 1.09003 * 109.47583 * 55.03755 * 1 2 3 26 26 H 1.08995 * 109.47327 * 175.04341 * 1 2 3 27 27 H 1.09010 * 109.47030 * 295.04043 * 1 2 3 28 28 H 0.97002 * 120.01001 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00139 * 95.00182 * 12 2 1 30 30 H 1.08002 * 119.78350 * 179.97438 * 18 17 16 31 31 H 1.07994 * 119.84360 * 179.97438 * 19 18 17 32 32 H 1.09006 * 110.57233 * 268.52050 * 23 22 17 33 33 H 1.08996 * 110.58190 * 145.63028 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.1354 -1.7856 -1.2289 6 6 2.3602 0.0119 -2.3580 7 7 2.7059 -0.6133 -3.4621 8 14 2.3136 1.8789 -2.3175 9 1 3.5991 2.3948 -1.7823 10 1 2.1058 2.3989 -3.6929 11 1 1.1987 2.3274 -1.4451 12 7 2.0183 -0.6905 1.1962 13 6 2.1417 -0.0194 2.3586 14 8 1.8525 1.1605 2.4131 15 6 2.6274 -0.7158 3.5635 16 6 1.7206 -1.3407 4.4289 17 6 2.1894 -1.9949 5.5639 18 6 3.5479 -2.0261 5.8332 19 6 4.4460 -1.4094 4.9798 20 6 3.9976 -0.7604 3.8463 21 9 4.8797 -0.1649 3.0140 22 8 1.1221 -2.5179 6.2373 23 6 -0.0320 -1.8289 5.7208 24 8 0.3635 -1.4518 4.3888 25 1 -0.3634 0.5889 -0.8422 26 1 -0.3634 -1.0238 -0.0888 27 1 -0.3634 0.4350 0.9312 28 1 2.9370 -0.1051 -4.2554 29 1 2.2490 -1.6316 1.1527 30 1 3.9084 -2.5344 6.7153 31 1 5.5031 -1.4393 5.1991 32 1 -0.2503 -0.9449 6.3199 33 1 -0.8942 -2.4950 5.6906 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931155515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:24 Heat of formation + Delta-G solvation = -112.357801 kcal Electronic energy + Delta-G solvation = -21980.120436 eV Core-core repulsion = 18307.880443 eV Total energy + Delta-G solvation = -3672.239993 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.96681 -42.43709 -39.18006 -37.46428 -36.49799 -34.90451 -32.42637 -31.37547 -29.92654 -29.37802 -26.06335 -25.33072 -24.31982 -23.16165 -21.28027 -19.77593 -18.76558 -18.47342 -17.95878 -17.30197 -16.77353 -15.99790 -15.88698 -15.52210 -15.30264 -15.08458 -14.52234 -14.15859 -13.94993 -13.47159 -13.24420 -13.20036 -12.84242 -12.73174 -12.51173 -12.36553 -11.85005 -11.46292 -11.12009 -10.95818 -10.82186 -10.59878 -9.88681 -9.43667 -9.22916 -9.05725 -8.70409 -8.28124 -8.16597 -6.23305 -4.27197 0.66957 0.75010 2.39078 2.99415 3.08285 3.10648 3.27961 3.35124 3.42553 3.70920 4.11564 4.28414 4.33326 4.44827 4.64299 4.65568 4.90366 4.97118 5.10876 5.25848 5.61211 5.64336 5.73255 5.79822 6.15849 6.33512 6.52305 6.66945 6.78023 6.90878 7.16703 7.33742 7.49957 8.07557 8.50435 8.74571 8.83826 9.38094 10.88256 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023916 B = 0.005328 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.479435 B = 5253.694600 C = 5823.708292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.230 3.770 3 H 0.052 0.948 4 C -0.530 4.530 5 H 0.080 0.920 6 C 0.083 3.917 7 N -0.887 5.887 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.686 5.686 13 C 0.552 3.448 14 O -0.541 6.541 15 C -0.135 4.135 16 C 0.096 3.904 17 C 0.017 3.983 18 C -0.062 4.062 19 C -0.146 4.146 20 C 0.145 3.855 21 F -0.116 7.116 22 O -0.305 6.305 23 C 0.212 3.788 24 O -0.292 6.292 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.268 0.732 29 H 0.395 0.605 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.088 0.912 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 -4.211 20.002 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.128 3.872 3 H 0.069 0.931 4 C -0.568 4.568 5 H 0.098 0.902 6 C -0.122 4.122 7 N -0.523 5.523 8 Si 0.699 3.301 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.333 5.333 13 C 0.335 3.665 14 O -0.420 6.420 15 C -0.140 4.140 16 C 0.050 3.950 17 C -0.028 4.028 18 C -0.081 4.081 19 C -0.165 4.165 20 C 0.125 3.875 21 F -0.094 7.094 22 O -0.221 6.221 23 C 0.100 3.900 24 O -0.207 6.207 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.229 0.771 30 H 0.166 0.834 31 H 0.174 0.826 32 H 0.106 0.894 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.654 -3.457 19.730 20.041 hybrid contribution 0.026 0.564 -0.209 0.602 sum -0.628 -2.892 19.521 19.744 Atomic orbital electron populations 1.22210 0.98286 1.00740 0.99347 1.19224 0.91144 0.94391 0.82441 0.93052 1.20980 1.45375 0.95677 0.94761 0.90212 1.24923 0.93498 0.98650 0.95114 1.69872 1.44532 1.36231 1.01689 0.86914 0.79935 0.85836 0.77406 1.19693 1.21080 1.18454 1.46705 1.63464 1.13979 1.09193 1.17784 0.79006 0.86800 0.82910 1.90773 1.51123 1.15190 1.84886 1.19101 0.91174 1.03950 0.99810 1.19230 0.83599 0.97384 0.94786 1.19653 0.90596 0.99506 0.93027 1.19878 0.87603 1.00091 1.00507 1.20805 1.01287 1.00719 0.93672 1.17095 0.84595 0.95863 0.89952 1.91607 1.66608 1.81014 1.70144 1.87396 1.14263 1.59495 1.60953 1.25755 0.89656 0.96357 0.78198 1.87430 1.17081 1.84984 1.31254 0.92726 0.93279 0.95159 0.92183 0.77083 0.83367 0.82614 0.89406 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.46 37.16 0.35 -2.99 16 2 C 0.23 5.70 2.22 -69.09 -0.15 5.54 16 3 H 0.05 1.38 4.73 -51.93 -0.25 1.14 16 4 C -0.53 -14.54 9.05 -34.44 -0.31 -14.85 16 5 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 6 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 7 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 8 Si 0.87 21.88 26.99 -169.99 -4.59 17.30 16 9 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.26 -6.43 6.82 56.52 0.39 -6.05 16 12 N -0.69 -14.99 5.07 -56.02 -0.28 -15.28 16 13 C 0.55 11.83 6.83 -12.53 -0.09 11.74 16 14 O -0.54 -13.42 16.77 5.28 0.09 -13.33 16 15 C -0.14 -2.31 5.64 -104.83 -0.59 -2.90 16 16 C 0.10 1.45 6.90 -38.56 -0.27 1.19 16 17 C 0.02 0.20 7.15 -39.14 -0.28 -0.08 16 18 C -0.06 -0.60 10.04 -39.42 -0.40 -1.00 16 19 C -0.15 -1.52 10.00 -39.57 -0.40 -1.92 16 20 C 0.15 2.15 7.28 -38.98 -0.28 1.87 16 21 F -0.12 -1.93 16.83 2.25 0.04 -1.89 16 22 O -0.30 -3.39 11.41 -46.03 -0.53 -3.91 16 23 C 0.21 2.02 8.89 101.05 0.90 2.92 16 24 O -0.29 -4.26 11.38 -44.79 -0.51 -4.77 16 25 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.40 7.80 8.58 -40.82 -0.35 7.45 16 30 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.14 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 298.87 15.07 4.50 4.50 Total: -1.00 -33.82 298.87 -5.24 -39.07 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -3.13 Total: 2.09 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.61 Total: 1.76 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.49 Total: -40.82 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.95 Total: -22.02 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.59 Total: 17.30 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.82 -5.24 -39.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931155515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.291 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds