Wall clock time and date at job start Tue Mar 31 2020 05:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38086 * 120.04339 * 2 1 4 4 C 1.50701 * 119.95477 * 0.27779 * 3 2 1 5 5 S 1.81397 * 109.47333 * 90.00182 * 4 3 2 6 6 C 1.81405 * 103.00248 * 180.02562 * 5 4 3 7 7 O 1.42102 * 109.47293 * 63.60844 * 5 4 3 8 8 C 1.38307 * 120.08847 * 180.27673 * 3 2 1 9 9 C 1.38355 * 120.16237 * 359.97438 * 8 3 2 10 10 C 1.38040 * 120.08358 * 0.02562 * 9 8 3 11 11 C 1.39011 * 120.04282 * 180.27321 * 2 1 3 12 12 N 1.39522 * 120.08143 * 359.75343 * 11 2 1 13 13 C 1.34776 * 120.00565 * 145.22268 * 12 11 2 14 14 O 1.21749 * 119.99586 * 4.50662 * 13 12 11 15 15 C 1.46166 * 120.00377 * 184.51066 * 13 12 11 16 16 H 1.07995 * 120.00309 * 359.97438 * 15 13 12 17 17 C 1.40134 * 119.99712 * 179.97438 * 15 13 12 18 18 N 1.30632 * 120.00118 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99588 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47532 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47354 * 119.99720 * 19 17 15 22 22 H 1.48507 * 109.46954 * 239.99834 * 19 17 15 23 23 H 1.08997 * 109.47106 * 269.72587 * 1 2 3 24 24 H 1.09003 * 109.47425 * 29.72222 * 1 2 3 25 25 H 1.08998 * 109.46923 * 149.72398 * 1 2 3 26 26 H 1.09007 * 109.47007 * 209.99972 * 4 3 2 27 27 H 1.09000 * 109.47249 * 329.99521 * 4 3 2 28 28 H 1.08994 * 109.46965 * 59.99058 * 6 5 4 29 29 H 1.08998 * 109.46913 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.46458 * 299.99998 * 6 5 4 31 31 H 1.07995 * 119.92204 * 180.02562 * 8 3 2 32 32 H 1.08000 * 119.95886 * 179.97438 * 9 8 3 33 33 H 1.08003 * 120.04065 * 179.97438 * 10 9 8 34 34 H 0.97001 * 120.00210 * 325.21203 * 12 11 2 35 35 H 0.96999 * 119.99765 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1953 0.0000 4 6 1.4448 2.5004 0.0063 5 16 1.1496 3.0200 1.7191 6 6 0.2468 4.5810 1.5222 7 8 2.3934 3.2691 2.3595 8 6 3.5814 1.1964 -0.0058 9 6 4.2775 0.0008 -0.0110 10 6 3.5933 -1.1982 -0.0111 11 6 2.2029 -1.2033 -0.0057 12 7 1.5079 -2.4131 -0.0063 13 6 2.0010 -3.4733 -0.6766 14 8 3.0916 -3.4008 -1.2130 15 6 1.2264 -4.7101 -0.7598 16 1 0.2592 -4.7746 -0.2838 17 6 1.7390 -5.8122 -1.4573 18 7 2.9087 -5.7341 -2.0335 19 14 0.7487 -7.3925 -1.5642 20 1 -0.5332 -7.2239 -0.8337 21 1 0.4696 -7.7064 -2.9885 22 1 1.5227 -8.5038 -0.9549 23 1 -0.3633 -0.0049 1.0276 24 1 -0.3634 0.8925 -0.5095 25 1 -0.3633 -0.8875 -0.5181 26 1 2.0317 3.2614 -0.5082 27 1 0.4902 2.3713 -0.5039 28 1 -0.6777 4.3994 0.9742 29 1 0.0129 4.9918 2.5043 30 1 0.8633 5.2900 0.9696 31 1 4.1193 2.1328 -0.0053 32 1 5.3574 0.0054 -0.0160 33 1 4.1374 -2.1312 -0.0156 34 1 0.6699 -2.4913 0.4759 35 1 3.2633 -6.4968 -2.5166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116641603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:02 Heat of formation + Delta-G solvation = -81.992624 kcal Electronic energy + Delta-G solvation = -19400.656409 eV Core-core repulsion = 16295.946325 eV Total energy + Delta-G solvation = -3104.710084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05895 -38.96332 -36.75965 -35.48849 -34.58285 -34.18309 -31.55825 -29.77411 -28.82921 -27.76884 -27.10456 -23.61426 -21.94375 -21.20037 -19.45715 -18.41689 -17.70670 -17.51483 -16.72587 -16.41896 -16.30111 -15.85895 -15.65658 -15.01588 -14.80076 -14.63509 -14.34509 -14.17722 -13.74554 -13.50183 -13.42251 -13.20161 -13.16294 -12.86468 -12.71068 -12.70122 -12.53471 -12.14255 -11.96506 -11.88695 -11.36763 -11.02943 -10.73419 -9.87781 -9.54712 -8.98344 -8.68356 -8.33552 -6.90940 0.20224 0.51121 0.95856 1.42259 1.42999 1.61145 1.83101 2.23483 2.40947 2.89067 2.89505 3.04493 3.60512 3.75081 3.98680 4.17715 4.25825 4.35236 4.40829 4.58867 4.61131 4.69823 4.92834 4.99594 5.07816 5.13851 5.20937 5.28927 5.47421 5.53749 5.67110 5.68069 5.83747 5.97397 6.21405 6.46528 6.81332 7.41019 8.40350 8.60431 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.036119 B = 0.003896 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.026464 B = 7185.780025 C = 7716.970316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C -0.054 4.054 4 C -0.398 4.398 5 S 1.284 4.716 6 C -0.487 4.487 7 O -0.919 6.919 8 C -0.157 4.157 9 C -0.116 4.116 10 C -0.159 4.159 11 C 0.158 3.842 12 N -0.685 5.685 13 C 0.527 3.473 14 O -0.610 6.610 15 C -0.562 4.562 16 H 0.098 0.902 17 C 0.028 3.972 18 N -0.817 5.817 19 Si 1.002 2.998 20 H -0.241 1.241 21 H -0.270 1.270 22 H -0.271 1.271 23 H 0.110 0.890 24 H 0.105 0.895 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.168 0.832 28 H 0.152 0.848 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.410 0.590 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.562 14.986 5.897 21.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.124 4.124 3 C -0.056 4.056 4 C -0.533 4.533 5 S 1.485 4.515 6 C -0.646 4.646 7 O -0.915 6.915 8 C -0.177 4.177 9 C -0.135 4.135 10 C -0.180 4.180 11 C 0.061 3.939 12 N -0.329 5.329 13 C 0.334 3.666 14 O -0.496 6.496 15 C -0.598 4.598 16 H 0.116 0.884 17 C -0.188 4.188 18 N -0.446 5.446 19 Si 0.821 3.179 20 H -0.163 1.163 21 H -0.195 1.195 22 H -0.197 1.197 23 H 0.128 0.872 24 H 0.124 0.876 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.186 0.814 28 H 0.171 0.829 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.117 0.883 34 H 0.247 0.753 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.422 14.463 6.251 20.064 hybrid contribution 1.693 0.548 -1.263 2.182 sum -10.729 15.012 4.988 19.114 Atomic orbital electron populations 1.21037 0.87430 1.04331 1.05024 1.19860 0.98410 0.89513 1.04607 1.18900 0.92481 0.93338 1.00884 1.26740 1.07950 0.98159 1.20442 1.69944 0.97784 0.98749 0.85029 1.27646 1.11698 1.16125 1.09143 1.93030 1.47266 1.85016 1.66165 1.21031 0.94789 0.97201 1.04711 1.21026 0.99994 0.91978 1.00481 1.21312 0.94636 0.98267 1.03823 1.18032 0.91148 0.87006 0.97730 1.43561 1.26275 1.09264 1.53849 1.18812 0.86070 0.83830 0.77869 1.90593 1.24057 1.83506 1.51428 1.21441 1.05923 0.96097 1.36314 0.88438 1.27044 0.95515 1.04097 0.92154 1.70174 1.17803 1.31798 1.24837 0.84902 0.78977 0.75135 0.78882 1.16329 1.19503 1.19657 0.87210 0.87624 0.92421 0.88987 0.81403 0.82942 0.86857 0.91177 0.86345 0.85940 0.88344 0.75327 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 9.07 71.23 0.65 -1.70 16 2 C -0.12 -3.72 5.90 -19.72 -0.12 -3.83 16 3 C -0.05 -1.59 5.14 -19.88 -0.10 -1.69 16 4 C -0.40 -7.15 5.64 71.24 0.40 -6.75 16 5 S 1.28 20.62 13.78 -56.49 -0.78 19.84 16 6 C -0.49 -4.44 10.74 113.37 1.22 -3.22 16 7 O -0.92 -29.60 18.14 -148.98 -2.70 -32.30 16 8 C -0.16 -5.51 9.70 22.31 0.22 -5.30 16 9 C -0.12 -4.69 10.04 22.25 0.22 -4.46 16 10 C -0.16 -7.49 8.69 22.42 0.19 -7.29 16 11 C 0.16 6.70 6.28 38.30 0.24 6.95 16 12 N -0.68 -30.38 4.73 -307.54 -1.45 -31.84 16 13 C 0.53 29.89 7.58 86.30 0.65 30.54 16 14 O -0.61 -40.20 12.43 -4.51 -0.06 -40.26 16 15 C -0.56 -30.40 9.54 24.79 0.24 -30.16 16 16 H 0.10 4.59 7.85 -2.91 -0.02 4.57 16 17 C 0.03 1.49 5.50 85.33 0.47 1.96 16 18 N -0.82 -48.99 11.82 21.85 0.26 -48.73 16 19 Si 1.00 39.16 29.56 68.60 2.03 41.19 16 20 H -0.24 -8.47 7.11 99.48 0.71 -7.77 16 21 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 23 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.11 1.21 5.94 -2.39 -0.01 1.19 16 25 H 0.06 1.32 7.19 -2.39 -0.02 1.30 16 26 H 0.09 1.72 8.09 -2.39 -0.02 1.70 16 27 H 0.17 1.58 5.94 -2.39 -0.01 1.57 16 28 H 0.15 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 32 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.10 5.47 6.20 -2.91 -0.02 5.46 16 34 H 0.41 14.71 7.84 -92.71 -0.73 13.98 16 35 H 0.28 14.97 8.29 -92.71 -0.77 14.20 16 Total: -1.00 -90.48 311.60 1.97 -88.51 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.39 Total: 28.55 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 4.28 Total: -24.97 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.20 Total: -80.57 kcal Atomic # 8 Polarization: -69.80 SS G_CDS: -2.76 Total: -72.56 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Atomic # 16 Polarization: 20.62 SS G_CDS: -0.78 Total: 19.84 kcal Total: -90.48 1.97 -88.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116641603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.516 kcal (2) G-P(sol) polarization free energy of solvation -90.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds