Wall clock time and date at job start Tue Mar 31 2020 05:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38086 * 120.04339 * 2 1 4 4 C 1.50701 * 119.95485 * 0.25585 * 3 2 1 5 5 S 1.81397 * 109.47441 * 89.99955 * 4 3 2 6 6 C 1.81401 * 103.00342 * 179.97438 * 5 4 3 7 7 O 1.42101 * 109.47079 * 296.38704 * 5 4 3 8 8 C 1.38299 * 120.08635 * 180.29591 * 3 2 1 9 9 C 1.38355 * 120.16855 * 359.95952 * 8 3 2 10 10 C 1.38040 * 120.07951 * 0.04159 * 9 8 3 11 11 C 1.39011 * 120.04282 * 180.27321 * 2 1 3 12 12 N 1.39531 * 120.07933 * 359.75344 * 11 2 1 13 13 C 1.34775 * 119.99989 * 145.22481 * 12 11 2 14 14 O 1.21749 * 120.00000 * 4.50398 * 13 12 11 15 15 C 1.46166 * 119.99963 * 184.50908 * 13 12 11 16 16 H 1.07995 * 120.00309 * 359.97438 * 15 13 12 17 17 C 1.40126 * 120.00090 * 179.97438 * 15 13 12 18 18 N 1.30644 * 119.99839 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00318 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47186 * 60.00030 * 19 17 15 21 21 H 1.48501 * 109.47690 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47028 * 300.00258 * 19 17 15 23 23 H 1.08997 * 109.47106 * 269.72587 * 1 2 3 24 24 H 1.09003 * 109.47425 * 29.72222 * 1 2 3 25 25 H 1.08998 * 109.46923 * 149.72398 * 1 2 3 26 26 H 1.09004 * 109.46914 * 209.99721 * 4 3 2 27 27 H 1.08995 * 109.47165 * 329.99968 * 4 3 2 28 28 H 1.09002 * 109.46798 * 60.00170 * 6 5 4 29 29 H 1.08997 * 109.47363 * 179.97438 * 6 5 4 30 30 H 1.08998 * 109.46846 * 300.00294 * 6 5 4 31 31 H 1.08003 * 119.92303 * 179.97438 * 8 3 2 32 32 H 1.07999 * 119.96282 * 180.02562 * 9 8 3 33 33 H 1.08003 * 120.04065 * 179.97438 * 10 9 8 34 34 H 0.96994 * 120.00064 * 325.20932 * 12 11 2 35 35 H 0.96999 * 119.99864 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1953 0.0000 4 6 1.4448 2.5004 0.0058 5 16 1.1490 3.0203 1.7183 6 6 0.2476 4.5821 1.5209 7 8 0.3139 2.0694 2.3645 8 6 3.5813 1.1964 -0.0062 9 6 4.2775 0.0008 -0.0115 10 6 3.5933 -1.1982 -0.0116 11 6 2.2029 -1.2033 -0.0057 12 7 1.5078 -2.4132 -0.0063 13 6 2.0010 -3.4733 -0.6766 14 8 3.0916 -3.4008 -1.2130 15 6 1.2264 -4.7101 -0.7598 16 1 0.2592 -4.7746 -0.2839 17 6 1.7389 -5.8122 -1.4572 18 7 2.9092 -5.7344 -2.0326 19 14 0.7494 -7.3930 -1.5630 20 1 -0.5499 -7.1201 -2.2282 21 1 1.5068 -8.3996 -2.3493 22 1 0.5047 -7.9163 -0.1949 23 1 -0.3633 -0.0049 1.0276 24 1 -0.3634 0.8925 -0.5095 25 1 -0.3633 -0.8875 -0.5181 26 1 2.0319 3.2612 -0.5086 27 1 0.4904 2.3712 -0.5046 28 1 -0.6768 4.4012 0.9724 29 1 0.0126 4.9927 2.5028 30 1 0.8650 5.2905 0.9687 31 1 4.1193 2.1328 -0.0066 32 1 5.3574 0.0055 -0.0159 33 1 4.1374 -2.1312 -0.0162 34 1 0.6699 -2.4913 0.4759 35 1 3.2641 -6.4974 -2.5151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116641604.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:05 Heat of formation + Delta-G solvation = -52.890171 kcal Electronic energy + Delta-G solvation = -19494.814089 eV Core-core repulsion = 16391.365982 eV Total energy + Delta-G solvation = -3103.448107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.49498 -37.14189 -35.65254 -33.69962 -32.92086 -32.44619 -30.09043 -29.10858 -27.27820 -26.16380 -25.77900 -21.89328 -20.53526 -19.43619 -17.59429 -17.47154 -16.14475 -15.66863 -15.43434 -15.34238 -14.88891 -14.58314 -14.19403 -13.99884 -13.38516 -13.13558 -12.91907 -12.61862 -12.54904 -12.43873 -12.21663 -11.95907 -11.81328 -11.42600 -11.34791 -11.07405 -10.79677 -10.62565 -10.59720 -10.35233 -10.20810 -9.22801 -8.85298 -8.49527 -7.90368 -7.64794 -7.02766 -6.33525 -4.80960 1.27320 2.00219 2.15318 2.62214 3.09632 3.14528 3.16467 3.76556 4.00081 4.27522 4.53501 4.64176 4.89490 4.94482 4.99235 5.09938 5.43807 5.50881 5.63273 5.64473 5.70464 5.77226 5.99897 6.12725 6.21650 6.35181 6.47299 6.67906 6.96768 7.15350 7.18647 7.29062 7.47287 7.75583 8.08597 8.21375 8.85906 9.24181 10.39865 10.57829 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033646 B = 0.004042 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.991209 B = 6925.450890 C = 7523.266013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.128 4.128 3 C -0.061 4.061 4 C -0.397 4.397 5 S 1.244 4.756 6 C -0.499 4.499 7 O -0.837 6.837 8 C -0.156 4.156 9 C -0.107 4.107 10 C -0.124 4.124 11 C 0.193 3.807 12 N -0.698 5.698 13 C 0.544 3.456 14 O -0.560 6.560 15 C -0.539 4.539 16 H 0.071 0.929 17 C 0.087 3.913 18 N -0.760 5.760 19 Si 0.913 3.087 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.266 1.266 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.121 0.879 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.144 0.856 34 H 0.393 0.607 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 18.015 5.599 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.133 4.133 3 C -0.063 4.063 4 C -0.533 4.533 5 S 1.443 4.557 6 C -0.656 4.656 7 O -0.833 6.833 8 C -0.176 4.176 9 C -0.126 4.126 10 C -0.146 4.146 11 C 0.094 3.906 12 N -0.341 5.341 13 C 0.351 3.649 14 O -0.442 6.442 15 C -0.575 4.575 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.388 5.388 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.191 1.191 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.139 0.861 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.161 0.839 34 H 0.227 0.773 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.305 17.430 5.913 18.408 hybrid contribution -2.896 -0.992 -1.165 3.275 sum -2.591 16.439 4.748 17.306 Atomic orbital electron populations 1.20750 0.92003 1.01826 1.02383 1.19484 0.95534 0.91827 1.06449 1.18463 0.93173 0.91092 1.03587 1.26635 1.05573 1.01964 1.19131 1.70759 1.10993 0.86860 0.87123 1.27757 1.11091 1.18960 1.07750 1.93148 1.69983 1.56559 1.63563 1.20707 0.92633 0.97918 1.06372 1.20945 0.99323 0.92098 1.00213 1.21551 0.93165 0.99381 1.00484 1.17774 0.91546 0.85857 0.95452 1.44106 1.25908 1.09840 1.54233 1.18366 0.86488 0.82248 0.77814 1.90609 1.21985 1.82314 1.49306 1.20823 1.04912 0.95896 1.35908 0.91092 1.25735 0.94588 0.99749 0.93333 1.69978 1.15156 1.30273 1.23370 0.86340 0.80155 0.80698 0.79089 1.19169 1.20378 1.19098 0.90693 0.92769 0.91627 0.86077 0.88719 0.90429 0.87971 0.87228 0.86381 0.86417 0.83854 0.77343 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 8.84 36.00 0.32 -1.64 16 2 C -0.13 -2.42 5.90 -104.39 -0.62 -3.04 16 3 C -0.06 -0.95 5.14 -104.65 -0.54 -1.48 16 4 C -0.40 -4.34 5.64 36.01 0.20 -4.13 16 5 S 1.24 11.70 13.78 -107.50 -1.48 10.22 16 6 C -0.50 -3.51 10.74 101.05 1.09 -2.42 16 7 O -0.84 -13.54 17.27 -35.23 -0.61 -14.15 16 8 C -0.16 -2.25 9.70 -39.52 -0.38 -2.64 16 9 C -0.11 -1.83 10.04 -39.61 -0.40 -2.23 16 10 C -0.12 -2.70 8.69 -39.36 -0.34 -3.04 16 11 C 0.19 4.25 6.28 -83.77 -0.53 3.72 16 12 N -0.70 -16.50 4.73 -11.20 -0.05 -16.55 16 13 C 0.54 15.40 7.58 -13.08 -0.10 15.31 16 14 O -0.56 -17.56 12.42 5.14 0.06 -17.49 16 15 C -0.54 -15.04 9.54 -35.69 -0.34 -15.38 16 16 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 17 C 0.09 2.38 5.50 -17.35 -0.10 2.29 16 18 N -0.76 -22.22 11.82 55.55 0.66 -21.57 16 19 Si 0.91 19.82 29.56 -169.99 -5.02 14.80 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H 0.07 1.33 7.50 -51.93 -0.39 0.94 16 24 H 0.05 0.83 5.94 -51.93 -0.31 0.52 16 25 H 0.06 1.17 7.19 -51.93 -0.37 0.79 16 26 H 0.12 0.89 8.08 -51.92 -0.42 0.47 16 27 H 0.09 1.12 5.94 -51.93 -0.31 0.81 16 28 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.14 3.53 6.20 -52.48 -0.33 3.21 16 34 H 0.39 8.30 7.84 -40.82 -0.32 7.98 16 35 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 LS Contribution 309.86 15.07 4.67 4.67 Total: -1.00 -37.60 309.86 -7.61 -45.21 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -4.10 Total: 9.56 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -1.73 Total: -14.69 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.60 Total: -38.12 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.54 Total: -31.65 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 11.70 SS G_CDS: -1.48 Total: 10.22 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -37.60 -7.61 -45.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116641604.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.681 kcal (2) G-P(sol) polarization free energy of solvation -37.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds