Wall clock time and date at job start Tue Mar 31 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38086 * 120.04339 * 2 1 4 4 C 1.50701 * 119.95485 * 0.25585 * 3 2 1 5 5 S 1.81397 * 109.47441 * 89.99955 * 4 3 2 6 6 C 1.81401 * 103.00342 * 179.97438 * 5 4 3 7 7 O 1.42101 * 109.47079 * 296.38704 * 5 4 3 8 8 C 1.38299 * 120.08635 * 180.29591 * 3 2 1 9 9 C 1.38355 * 120.16855 * 359.95952 * 8 3 2 10 10 C 1.38040 * 120.07951 * 0.04159 * 9 8 3 11 11 C 1.39011 * 120.04282 * 180.27321 * 2 1 3 12 12 N 1.39531 * 120.07933 * 359.75344 * 11 2 1 13 13 C 1.34775 * 119.99989 * 145.22481 * 12 11 2 14 14 O 1.21749 * 120.00000 * 4.50398 * 13 12 11 15 15 C 1.46166 * 119.99963 * 184.50908 * 13 12 11 16 16 H 1.07995 * 120.00309 * 359.97438 * 15 13 12 17 17 C 1.40126 * 120.00090 * 179.97438 * 15 13 12 18 18 N 1.30644 * 119.99839 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00318 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47186 * 60.00030 * 19 17 15 21 21 H 1.48501 * 109.47690 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47028 * 300.00258 * 19 17 15 23 23 H 1.08997 * 109.47106 * 269.72587 * 1 2 3 24 24 H 1.09003 * 109.47425 * 29.72222 * 1 2 3 25 25 H 1.08998 * 109.46923 * 149.72398 * 1 2 3 26 26 H 1.09004 * 109.46914 * 209.99721 * 4 3 2 27 27 H 1.08995 * 109.47165 * 329.99968 * 4 3 2 28 28 H 1.09002 * 109.46798 * 60.00170 * 6 5 4 29 29 H 1.08997 * 109.47363 * 179.97438 * 6 5 4 30 30 H 1.08998 * 109.46846 * 300.00294 * 6 5 4 31 31 H 1.08003 * 119.92303 * 179.97438 * 8 3 2 32 32 H 1.07999 * 119.96282 * 180.02562 * 9 8 3 33 33 H 1.08003 * 120.04065 * 179.97438 * 10 9 8 34 34 H 0.96994 * 120.00064 * 325.20932 * 12 11 2 35 35 H 0.96999 * 119.99864 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1953 0.0000 4 6 1.4448 2.5004 0.0058 5 16 1.1490 3.0203 1.7183 6 6 0.2476 4.5821 1.5209 7 8 0.3139 2.0694 2.3645 8 6 3.5813 1.1964 -0.0062 9 6 4.2775 0.0008 -0.0115 10 6 3.5933 -1.1982 -0.0116 11 6 2.2029 -1.2033 -0.0057 12 7 1.5078 -2.4132 -0.0063 13 6 2.0010 -3.4733 -0.6766 14 8 3.0916 -3.4008 -1.2130 15 6 1.2264 -4.7101 -0.7598 16 1 0.2592 -4.7746 -0.2839 17 6 1.7389 -5.8122 -1.4572 18 7 2.9092 -5.7344 -2.0326 19 14 0.7494 -7.3930 -1.5630 20 1 -0.5499 -7.1201 -2.2282 21 1 1.5068 -8.3996 -2.3493 22 1 0.5047 -7.9163 -0.1949 23 1 -0.3633 -0.0049 1.0276 24 1 -0.3634 0.8925 -0.5095 25 1 -0.3633 -0.8875 -0.5181 26 1 2.0319 3.2612 -0.5086 27 1 0.4904 2.3712 -0.5046 28 1 -0.6768 4.4012 0.9724 29 1 0.0126 4.9927 2.5028 30 1 0.8650 5.2905 0.9687 31 1 4.1193 2.1328 -0.0066 32 1 5.3574 0.0055 -0.0159 33 1 4.1374 -2.1312 -0.0162 34 1 0.6699 -2.4913 0.4759 35 1 3.2641 -6.4974 -2.5151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116641604.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:04 Heat of formation + Delta-G solvation = -81.686654 kcal Electronic energy + Delta-G solvation = -19496.062798 eV Core-core repulsion = 16391.365982 eV Total energy + Delta-G solvation = -3104.696816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06944 -38.98971 -36.67776 -35.52294 -34.63415 -34.17433 -31.61707 -29.74596 -28.90119 -27.76746 -27.21220 -23.60490 -21.96126 -21.18783 -19.52454 -18.32261 -17.74188 -17.55968 -16.74841 -16.39375 -16.33268 -15.86078 -15.62057 -15.15490 -14.72033 -14.63148 -14.35731 -14.20986 -13.79195 -13.54699 -13.43938 -13.25227 -13.07877 -13.02101 -12.82752 -12.74166 -12.55836 -12.17690 -12.10366 -11.91212 -11.30952 -11.04446 -10.72716 -9.92866 -9.53036 -8.95301 -8.68937 -8.40199 -6.99516 0.25576 0.57040 1.01060 1.35404 1.39123 1.51052 1.88111 2.17829 2.34628 2.89836 2.93482 3.04773 3.51943 3.76171 4.00511 4.12121 4.23483 4.37479 4.44948 4.60225 4.63722 4.72468 4.82035 4.84995 4.89915 5.03865 5.20089 5.22161 5.30908 5.54616 5.66665 5.71208 5.80897 6.02826 6.11683 6.45124 6.73006 7.27795 8.30903 8.52726 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033646 B = 0.004042 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.991209 B = 6925.450890 C = 7523.266013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.143 4.143 3 C -0.057 4.057 4 C -0.401 4.401 5 S 1.288 4.712 6 C -0.489 4.489 7 O -0.912 6.912 8 C -0.131 4.131 9 C -0.107 4.107 10 C -0.162 4.162 11 C 0.147 3.853 12 N -0.695 5.695 13 C 0.530 3.470 14 O -0.603 6.603 15 C -0.571 4.571 16 H 0.087 0.913 17 C 0.031 3.969 18 N -0.812 5.812 19 Si 1.002 2.998 20 H -0.255 1.255 21 H -0.269 1.269 22 H -0.254 1.254 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.173 0.827 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.150 0.850 31 H 0.182 0.818 32 H 0.145 0.855 33 H 0.097 0.903 34 H 0.400 0.600 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.332 21.317 5.575 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.148 4.148 3 C -0.059 4.059 4 C -0.536 4.536 5 S 1.489 4.511 6 C -0.647 4.647 7 O -0.908 6.908 8 C -0.151 4.151 9 C -0.125 4.125 10 C -0.183 4.183 11 C 0.051 3.949 12 N -0.339 5.339 13 C 0.337 3.663 14 O -0.489 6.489 15 C -0.607 4.607 16 H 0.105 0.895 17 C -0.186 4.186 18 N -0.440 5.440 19 Si 0.821 3.179 20 H -0.179 1.179 21 H -0.194 1.194 22 H -0.178 1.178 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.191 0.809 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.129 0.871 30 H 0.168 0.832 31 H 0.200 0.800 32 H 0.162 0.838 33 H 0.115 0.885 34 H 0.234 0.766 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.232 20.763 5.918 21.591 hybrid contribution -2.693 -1.689 -1.112 3.367 sum -2.924 19.074 4.806 19.887 Atomic orbital electron populations 1.20678 0.91424 1.02156 1.01930 1.19777 0.96249 0.92045 1.06683 1.19029 0.94166 0.91886 1.00796 1.26790 1.05500 1.00687 1.20630 1.69910 1.10271 0.86119 0.84801 1.27662 1.10923 1.17256 1.08899 1.93047 1.72056 1.59777 1.65893 1.21365 0.92342 0.99136 1.02268 1.21296 1.00807 0.91418 0.99002 1.21379 0.93363 0.99628 1.03967 1.18105 0.92013 0.86148 0.98682 1.43682 1.26142 1.10035 1.54007 1.18716 0.86162 0.83589 0.77862 1.90562 1.23600 1.83504 1.51245 1.21366 1.05789 0.96652 1.36862 0.89471 1.27002 0.95639 1.03895 0.92014 1.70136 1.17478 1.31996 1.24411 0.85002 0.78310 0.74866 0.79724 1.17907 1.19351 1.17818 0.91471 0.90604 0.93093 0.80948 0.89385 0.91482 0.87119 0.83167 0.80049 0.83753 0.88501 0.76570 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.71 8.84 71.23 0.63 -3.08 16 2 C -0.14 -5.46 5.90 -19.72 -0.12 -5.58 16 3 C -0.06 -1.61 5.14 -19.89 -0.10 -1.71 16 4 C -0.40 -6.92 5.64 71.24 0.40 -6.51 16 5 S 1.29 19.70 13.78 -56.49 -0.78 18.93 16 6 C -0.49 -4.49 10.74 113.37 1.22 -3.27 16 7 O -0.91 -28.59 17.27 -148.98 -2.57 -31.17 16 8 C -0.13 -3.29 9.70 22.31 0.22 -3.08 16 9 C -0.11 -3.57 10.04 22.25 0.22 -3.34 16 10 C -0.16 -7.47 8.69 22.42 0.19 -7.28 16 11 C 0.15 6.89 6.28 38.29 0.24 7.13 16 12 N -0.69 -35.47 4.73 -307.53 -1.45 -36.92 16 13 C 0.53 32.25 7.58 86.30 0.65 32.91 16 14 O -0.60 -40.93 12.42 -4.51 -0.06 -40.98 16 15 C -0.57 -33.42 9.54 24.79 0.24 -33.18 16 16 H 0.09 4.61 7.85 -2.91 -0.02 4.58 16 17 C 0.03 1.75 5.50 85.33 0.47 2.22 16 18 N -0.81 -49.80 11.82 21.85 0.26 -49.54 16 19 Si 1.00 41.43 29.56 68.60 2.03 43.46 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 21 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 23 H 0.07 2.45 7.50 -2.39 -0.02 2.44 16 24 H 0.08 2.27 5.94 -2.39 -0.01 2.25 16 25 H 0.05 1.90 7.19 -2.39 -0.02 1.88 16 26 H 0.17 1.23 8.08 -2.39 -0.02 1.21 16 27 H 0.09 1.73 5.94 -2.39 -0.01 1.72 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.15 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.18 2.30 8.06 -2.91 -0.02 2.27 16 32 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 33 H 0.10 5.31 6.20 -2.91 -0.02 5.29 16 34 H 0.40 18.30 7.84 -92.71 -0.73 17.58 16 35 H 0.28 15.42 8.29 -92.71 -0.77 14.65 16 Total: -1.00 -91.72 309.86 2.09 -89.64 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.40 Total: 31.39 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 4.27 Total: -24.79 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -1.20 Total: -86.46 kcal Atomic # 8 Polarization: -69.52 SS G_CDS: -2.63 Total: -72.15 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: 19.70 SS G_CDS: -0.78 Total: 18.93 kcal Total: -91.72 2.09 -89.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116641604.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.948 kcal (2) G-P(sol) polarization free energy of solvation -91.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds