Wall clock time and date at job start Tue Mar 31 2020 05:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37947 * 119.71336 * 2 1 4 4 C 1.38226 * 119.82681 * 180.02562 * 3 2 1 5 5 C 1.37998 * 119.71718 * 0.26532 * 4 3 2 6 6 C 1.38792 * 120.50636 * 359.92675 * 5 4 3 7 7 C 1.37719 * 119.84525 * 359.58256 * 6 5 4 8 8 C 1.50597 * 122.85164 * 181.44597 * 7 6 5 9 9 C 1.53272 * 110.82833 * 339.69339 * 8 7 6 10 10 N 1.47224 * 107.66479 * 47.63887 * 9 8 7 11 11 S 1.65601 * 121.32955 * 115.80979 * 10 9 8 12 12 O 1.42108 * 106.40271 * 156.17697 * 11 10 9 13 13 O 1.42098 * 106.40745 * 23.25911 * 11 10 9 14 14 C 1.76201 * 107.21953 * 269.71683 * 11 10 9 15 15 H 1.08002 * 120.00153 * 359.97438 * 14 11 10 16 16 C 1.37884 * 120.00146 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99707 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 119.99956 * 180.27487 * 16 14 11 19 19 H 1.48503 * 109.47407 * 269.72718 * 18 16 14 20 20 H 1.48505 * 109.47281 * 29.72474 * 18 16 14 21 21 H 1.48501 * 109.47274 * 149.72572 * 18 16 14 22 22 C 1.46681 * 117.33886 * 295.53997 * 10 9 8 23 23 H 1.09001 * 109.47372 * 89.99768 * 1 2 3 24 24 H 1.08994 * 109.47401 * 210.00461 * 1 2 3 25 25 H 1.09006 * 109.46647 * 330.00176 * 1 2 3 26 26 H 1.08002 * 120.08581 * 0.05662 * 3 2 1 27 27 H 1.07998 * 120.13685 * 180.28633 * 4 3 2 28 28 H 1.08003 * 119.74926 * 179.90907 * 5 4 3 29 29 H 1.08993 * 109.20270 * 100.16553 * 8 7 6 30 30 H 1.09005 * 109.19963 * 219.50553 * 8 7 6 31 31 H 1.09000 * 109.88824 * 288.11884 * 9 8 7 32 32 H 1.09000 * 109.90869 * 167.17187 * 9 8 7 33 33 H 0.97005 * 119.99656 * 179.97438 * 17 16 14 34 34 H 1.08996 * 109.43886 * 164.73653 * 22 10 9 35 35 H 1.09003 * 109.43307 * 284.65338 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1908 1.1981 0.0000 4 6 3.5730 1.2008 -0.0005 5 6 4.2595 0.0037 -0.0066 6 6 3.5726 -1.2023 -0.0107 7 6 2.1955 -1.2068 0.0001 8 6 1.3828 -2.4743 0.0285 9 6 2.2159 -3.6668 -0.4545 10 7 3.5104 -3.6201 0.2454 11 16 3.9654 -4.8174 1.2950 12 8 5.3852 -4.7874 1.3468 13 8 3.2254 -5.9741 0.9296 14 6 3.3991 -4.3500 2.8967 15 1 2.8636 -3.4216 3.0305 16 6 3.6404 -5.1689 3.9795 17 7 4.2937 -6.2986 3.8168 18 14 3.0333 -4.6769 5.6762 19 1 4.0814 -3.8826 6.3659 20 1 1.8004 -3.8599 5.5432 21 1 2.7354 -5.8972 6.4684 22 6 4.3834 -2.4737 -0.0288 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.6475 2.1315 0.0009 27 1 4.1134 2.1359 0.0041 28 1 5.3395 0.0053 -0.0085 29 1 1.0443 -2.6604 1.0477 30 1 0.5156 -2.3588 -0.6218 31 1 2.3758 -3.5960 -1.5304 32 1 1.7023 -4.5986 -0.2179 33 1 4.4638 -6.8745 4.5786 34 1 5.1607 -2.4192 0.7334 35 1 4.8445 -2.5953 -1.0090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935421.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:01 Heat of formation + Delta-G solvation = -74.012425 kcal Electronic energy + Delta-G solvation = -20402.005798 eV Core-core repulsion = 17297.641762 eV Total energy + Delta-G solvation = -3104.364036 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.85283 -36.15389 -35.32298 -33.97944 -33.59275 -33.07724 -30.85714 -29.83097 -26.63754 -26.11772 -24.64367 -23.38228 -20.71747 -19.97805 -18.46861 -17.32946 -16.38673 -16.07166 -15.40374 -15.22815 -14.92658 -14.27482 -14.16163 -13.96587 -13.37248 -13.26127 -13.12118 -12.71883 -12.37541 -12.16573 -11.96683 -11.90596 -11.65465 -11.26965 -11.21617 -11.17853 -10.87441 -10.60193 -10.53023 -10.31464 -10.19389 -10.04864 -9.24388 -8.93707 -8.45064 -8.32112 -8.17395 -6.69314 -5.30989 1.51851 1.57373 2.23299 3.06902 3.13538 3.20333 3.88286 4.05680 4.51689 4.64282 4.90636 4.92226 5.03503 5.16710 5.34272 5.39574 5.56379 5.61800 5.67784 5.71308 5.72693 5.84557 5.86329 5.98073 6.00094 6.14071 6.22370 6.26710 6.37265 6.46996 6.59373 6.66806 6.75443 7.00939 7.21175 7.33775 7.52807 7.99936 8.90007 10.24328 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.006582 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.895131 B = 4252.709526 C = 4646.336461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.092 4.092 3 C -0.127 4.127 4 C -0.123 4.123 5 C -0.122 4.122 6 C -0.079 4.079 7 C -0.060 4.060 8 C -0.101 4.101 9 C 0.125 3.875 10 N -1.013 6.013 11 S 2.717 3.283 12 O -1.003 7.003 13 O -1.002 7.002 14 C -1.017 5.017 15 H 0.102 0.898 16 C 0.134 3.866 17 N -0.847 5.847 18 Si 0.918 3.082 19 H -0.267 1.267 20 H -0.263 1.263 21 H -0.274 1.274 22 C 0.167 3.833 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.291 0.709 34 H 0.099 0.901 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 12.723 -7.074 15.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.141 4.141 6 C -0.080 4.080 7 C -0.060 4.060 8 C -0.140 4.140 9 C -0.001 4.001 10 N -0.847 5.847 11 S 2.818 3.182 12 O -0.994 6.994 13 O -0.992 6.992 14 C -1.151 5.151 15 H 0.120 0.880 16 C -0.084 4.084 17 N -0.477 5.477 18 Si 0.742 3.258 19 H -0.192 1.192 20 H -0.187 1.187 21 H -0.199 1.199 22 C 0.041 3.959 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.134 0.866 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.005 11.733 -7.286 14.690 hybrid contribution -0.523 0.841 1.387 1.705 sum -5.529 12.574 -5.899 14.948 Atomic orbital electron populations 1.20835 0.91572 1.02820 1.02008 1.19909 0.95867 0.92674 1.00741 1.20849 0.94337 0.97051 1.02317 1.20953 0.94273 0.97646 1.01240 1.21053 0.99934 0.91802 1.01302 1.20011 0.93568 0.95317 0.99145 1.19369 0.92858 0.94355 0.99460 1.21009 0.97583 0.92437 1.02936 1.21325 0.83910 0.98621 0.96262 1.58313 1.26219 1.38772 1.61369 1.00491 0.72965 0.70871 0.73895 1.93356 1.31790 1.86146 1.88058 1.93349 1.73821 1.47068 1.84997 1.30611 1.52139 1.17006 1.15349 0.87977 1.24743 0.90312 0.92372 1.00991 1.69897 1.33339 1.09962 1.34453 0.86193 0.79957 0.78936 0.80675 1.19193 1.18657 1.19939 1.20031 0.91587 0.82308 1.01953 0.91393 0.91081 0.91914 0.86594 0.86369 0.85972 0.89581 0.90267 0.91827 0.88330 0.89891 0.88283 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.13 36.01 0.33 -0.89 16 2 C -0.09 -1.24 5.89 -104.47 -0.61 -1.85 16 3 C -0.13 -1.58 9.68 -39.69 -0.38 -1.97 16 4 C -0.12 -1.54 10.05 -39.67 -0.40 -1.94 16 5 C -0.12 -1.72 9.62 -39.46 -0.38 -2.10 16 6 C -0.08 -1.28 5.82 -104.55 -0.61 -1.89 16 7 C -0.06 -0.94 5.76 -104.60 -0.60 -1.54 16 8 C -0.10 -1.53 4.72 -27.79 -0.13 -1.66 16 9 C 0.12 2.15 6.49 -3.51 -0.02 2.12 16 10 N -1.01 -20.90 3.25 -114.77 -0.37 -21.27 16 11 S 2.72 72.54 5.01 -107.50 -0.54 72.00 16 12 O -1.00 -29.29 16.94 -57.17 -0.97 -30.26 16 13 O -1.00 -29.03 16.70 -57.17 -0.95 -29.99 16 14 C -1.02 -28.21 9.75 30.60 0.30 -27.91 16 15 H 0.10 2.64 7.81 -52.49 -0.41 2.23 16 16 C 0.13 3.75 5.46 -17.82 -0.10 3.65 16 17 N -0.85 -25.00 13.19 55.43 0.73 -24.26 16 18 Si 0.92 20.79 29.54 -169.99 -5.02 15.77 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.26 -5.75 7.11 56.52 0.40 -5.34 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 C 0.17 3.01 6.09 -5.04 -0.03 2.98 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.75 6.65 -51.93 -0.35 0.41 16 25 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 26 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 27 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 28 H 0.12 1.47 8.05 -52.48 -0.42 1.05 16 29 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.08 0.95 7.00 -51.93 -0.36 0.58 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 1.76 7.03 -51.93 -0.37 1.39 16 33 H 0.29 7.70 8.31 -40.82 -0.34 7.37 16 34 H 0.10 1.86 7.41 -51.93 -0.38 1.48 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 303.43 15.07 4.57 4.57 Total: -1.00 -34.67 303.43 -9.58 -44.25 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.38 Total: 2.18 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: -2.64 Total: -32.99 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.36 Total: -45.54 kcal Atomic # 8 Polarization: -58.32 SS G_CDS: -1.92 Total: -60.25 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 72.54 SS G_CDS: -0.54 Total: 72.00 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.67 -9.58 -44.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935421.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.760 kcal (2) G-P(sol) polarization free energy of solvation -34.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds