Wall clock time and date at job start Tue Mar 31 2020 05:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50710 * 120.00292 * 2 1 4 4 N 1.46495 * 109.47271 * 124.99860 * 3 2 1 5 5 C 1.46497 * 120.00034 * 84.99894 * 4 3 2 6 6 C 1.50707 * 109.47012 * 84.99956 * 5 4 3 7 7 C 1.38238 * 119.99792 * 90.00154 * 6 5 4 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.98090 * 6 5 4 12 12 S 1.65603 * 120.00270 * 265.00440 * 4 3 2 13 13 O 1.42098 * 106.40011 * 23.53399 * 12 4 3 14 14 O 1.42096 * 106.40496 * 156.46061 * 12 4 3 15 15 C 1.76202 * 107.21509 * 270.00313 * 12 4 3 16 16 H 1.08002 * 119.99773 * 359.97438 * 15 12 4 17 17 C 1.37873 * 120.00331 * 179.97438 * 15 12 4 18 18 N 1.31523 * 119.99460 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00671 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47005 * 89.99462 * 19 17 15 21 21 H 1.48493 * 109.47381 * 210.00146 * 19 17 15 22 22 H 1.48501 * 109.46775 * 330.00081 * 19 17 15 23 23 H 1.08000 * 120.00237 * 180.02562 * 1 2 3 24 24 H 1.08008 * 120.00076 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.00283 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46817 * 4.99678 * 3 2 1 27 27 H 1.08999 * 109.47069 * 245.00361 * 3 2 1 28 28 H 1.09005 * 109.47643 * 325.00416 * 5 4 3 29 29 H 1.09000 * 109.47513 * 204.99580 * 5 4 3 30 30 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 31 31 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 32 32 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 33 33 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 34 34 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 35 35 H 0.97005 * 119.99438 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3216 0.7268 1.0024 6 6 5.2698 1.7227 0.3856 7 6 5.9932 2.5801 1.1933 8 6 6.8633 3.4932 0.6276 9 6 7.0104 3.5485 -0.7458 10 6 6.2830 2.6947 -1.5538 11 6 5.4164 1.7784 -0.9878 12 16 2.5443 2.0462 2.5563 13 8 1.1237 2.0290 2.5831 14 8 3.3480 1.4592 3.5705 15 6 3.0195 3.7404 2.4630 16 1 3.5094 4.1158 1.5767 17 6 2.7659 4.5868 3.5214 18 7 2.1688 4.1297 4.6004 19 14 3.2702 6.3827 3.4229 20 1 2.1584 7.1780 2.8428 21 1 3.5801 6.8853 4.7854 22 1 4.4732 6.5124 2.5619 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5401 0.9354 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1317 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 4.2583 -0.1564 0.3667 29 1 4.6874 0.4394 1.9882 30 1 5.8786 2.5366 2.2664 31 1 7.4282 4.1633 1.2586 32 1 7.6905 4.2617 -1.1877 33 1 6.3947 2.7409 -2.6270 34 1 4.8518 1.1081 -1.6188 35 1 1.9907 4.7251 5.3452 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192962903.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:28 Heat of formation + Delta-G solvation = -44.502794 kcal Electronic energy + Delta-G solvation = -20455.431722 eV Core-core repulsion = 17352.347319 eV Total energy + Delta-G solvation = -3103.084403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.97779 -36.27198 -35.29194 -33.92386 -33.06708 -33.01452 -30.54327 -30.51367 -26.45022 -26.07488 -24.05446 -22.19126 -21.00936 -19.44356 -18.67594 -17.37398 -16.45862 -16.23109 -15.42638 -15.08544 -14.89054 -14.56521 -14.38100 -13.93379 -13.43897 -13.14307 -13.04769 -12.72487 -12.28473 -12.04632 -11.78847 -11.33575 -11.21322 -11.17382 -11.13743 -10.80185 -10.64198 -10.58842 -10.40002 -10.25485 -10.05436 -9.22463 -9.02458 -8.89164 -8.55397 -8.45591 -8.21128 -6.67044 -5.27582 1.62725 1.76732 2.27219 2.72441 3.07231 3.14440 3.21681 4.05027 4.14994 4.66697 4.70939 5.14521 5.16649 5.29506 5.31679 5.43279 5.52008 5.63393 5.74966 5.83119 5.90535 5.99200 6.10732 6.17674 6.30332 6.33821 6.39022 6.47195 6.66613 6.76232 6.87565 6.95913 7.04331 7.19666 7.35486 7.36404 7.59358 8.04176 8.92893 10.26413 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.010515 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.413325 B = 2662.131737 C = 4319.389191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.175 4.175 3 C 0.156 3.844 4 N -1.002 6.002 5 C 0.159 3.841 6 C -0.099 4.099 7 C -0.090 4.090 8 C -0.121 4.121 9 C -0.125 4.125 10 C -0.131 4.131 11 C -0.109 4.109 12 S 2.711 3.289 13 O -0.999 6.999 14 O -1.005 7.005 15 C -1.013 5.013 16 H 0.103 0.897 17 C 0.135 3.865 18 N -0.847 5.847 19 Si 0.914 3.086 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.261 1.261 23 H 0.092 0.908 24 H 0.101 0.899 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.741 -3.485 -11.009 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.195 4.195 3 C 0.030 3.970 4 N -0.834 5.834 5 C 0.033 3.967 6 C -0.101 4.101 7 C -0.108 4.108 8 C -0.139 4.139 9 C -0.144 4.144 10 C -0.149 4.149 11 C -0.127 4.127 12 S 2.812 3.188 13 O -0.990 6.990 14 O -0.996 6.996 15 C -1.147 5.147 16 H 0.121 0.879 17 C -0.082 4.082 18 N -0.477 5.477 19 Si 0.738 3.262 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.185 1.185 23 H 0.111 0.889 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.150 0.850 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.225 -3.955 -10.114 12.051 hybrid contribution 0.488 1.567 -0.342 1.676 sum 5.713 -2.388 -10.456 12.152 Atomic orbital electron populations 1.23834 0.95986 1.01785 0.99631 1.23351 0.96310 0.99114 1.00747 1.20167 0.91444 0.95397 0.89949 1.58077 1.20336 1.73881 1.31078 1.20109 0.81319 0.93182 1.02135 1.20435 0.97274 0.98578 0.93828 1.21327 0.94496 0.94055 1.00950 1.21138 0.99150 0.98701 0.94935 1.21069 1.00054 0.99299 0.93941 1.21013 0.97822 0.96876 0.99194 1.20979 0.98467 0.99004 0.94292 1.00663 0.72902 0.75514 0.69719 1.93360 1.31559 1.88956 1.85106 1.93336 1.71219 1.80030 1.54982 1.30604 1.54189 1.19449 1.10413 0.87889 1.24710 0.89911 1.00911 0.92703 1.69908 1.34230 1.38326 1.05253 0.86250 0.79921 0.81628 0.78354 1.19276 1.20058 1.18528 0.88924 0.88078 0.87745 0.89608 0.90857 0.90592 0.88344 0.84966 0.86343 0.86764 0.86709 0.86507 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 14.32 29.02 0.42 -2.24 16 2 C -0.18 -2.77 9.84 -36.02 -0.35 -3.12 16 3 C 0.16 2.70 5.78 -5.19 -0.03 2.67 16 4 N -1.00 -20.17 2.75 -116.94 -0.32 -20.50 16 5 C 0.16 2.72 5.80 -5.19 -0.03 2.69 16 6 C -0.10 -1.65 5.46 -104.62 -0.57 -2.22 16 7 C -0.09 -1.59 9.70 -39.58 -0.38 -1.97 16 8 C -0.12 -1.90 10.05 -39.58 -0.40 -2.29 16 9 C -0.13 -1.73 10.05 -39.58 -0.40 -2.12 16 10 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 11 C -0.11 -1.55 9.37 -39.58 -0.37 -1.92 16 12 S 2.71 71.72 4.93 -107.50 -0.53 71.19 16 13 O -1.00 -29.02 16.99 -57.17 -0.97 -29.99 16 14 O -1.01 -28.87 16.57 -57.17 -0.95 -29.82 16 15 C -1.01 -27.55 9.75 30.60 0.30 -27.25 16 16 H 0.10 2.64 7.81 -52.49 -0.41 2.23 16 17 C 0.14 3.75 5.46 -17.82 -0.10 3.65 16 18 N -0.85 -24.84 13.19 55.43 0.73 -24.11 16 19 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 22 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 23 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 24 H 0.10 1.59 7.84 -52.48 -0.41 1.18 16 25 H 0.10 1.46 8.06 -52.48 -0.42 1.03 16 26 H 0.09 1.60 7.26 -51.93 -0.38 1.22 16 27 H 0.07 1.05 7.61 -51.93 -0.40 0.66 16 28 H 0.08 1.04 8.05 -51.93 -0.42 0.63 16 29 H 0.10 1.80 6.86 -51.93 -0.36 1.44 16 30 H 0.13 2.54 8.06 -52.48 -0.42 2.12 16 31 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.12 1.39 7.90 -52.49 -0.41 0.98 16 35 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 320.90 15.07 4.84 4.84 Total: -1.00 -33.92 320.90 -9.00 -42.92 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.45 Total: 6.10 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: -2.32 Total: -36.26 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.41 Total: -44.61 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -1.92 Total: -59.81 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 71.72 SS G_CDS: -0.53 Total: 71.19 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.92 -9.00 -42.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192962903.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.582 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds