Wall clock time and date at job start Tue Mar 31 2020 05:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50710 * 120.00292 * 2 1 4 4 N 1.46495 * 109.47271 * 124.99860 * 3 2 1 5 5 C 1.46497 * 120.00034 * 84.99894 * 4 3 2 6 6 C 1.50707 * 109.47012 * 84.99956 * 5 4 3 7 7 C 1.38238 * 119.99792 * 90.00154 * 6 5 4 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.98090 * 6 5 4 12 12 S 1.65603 * 120.00270 * 265.00440 * 4 3 2 13 13 O 1.42098 * 106.40011 * 23.53399 * 12 4 3 14 14 O 1.42096 * 106.40496 * 156.46061 * 12 4 3 15 15 C 1.76202 * 107.21509 * 270.00313 * 12 4 3 16 16 H 1.08002 * 119.99773 * 359.97438 * 15 12 4 17 17 C 1.37873 * 120.00331 * 179.97438 * 15 12 4 18 18 N 1.31523 * 119.99460 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00671 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47005 * 89.99462 * 19 17 15 21 21 H 1.48493 * 109.47381 * 210.00146 * 19 17 15 22 22 H 1.48501 * 109.46775 * 330.00081 * 19 17 15 23 23 H 1.08000 * 120.00237 * 180.02562 * 1 2 3 24 24 H 1.08008 * 120.00076 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.00283 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46817 * 4.99678 * 3 2 1 27 27 H 1.08999 * 109.47069 * 245.00361 * 3 2 1 28 28 H 1.09005 * 109.47643 * 325.00416 * 5 4 3 29 29 H 1.09000 * 109.47513 * 204.99580 * 5 4 3 30 30 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 31 31 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 32 32 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 33 33 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 34 34 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 35 35 H 0.97005 * 119.99438 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3216 0.7268 1.0024 6 6 5.2698 1.7227 0.3856 7 6 5.9932 2.5801 1.1933 8 6 6.8633 3.4932 0.6276 9 6 7.0104 3.5485 -0.7458 10 6 6.2830 2.6947 -1.5538 11 6 5.4164 1.7784 -0.9878 12 16 2.5443 2.0462 2.5563 13 8 1.1237 2.0290 2.5831 14 8 3.3480 1.4592 3.5705 15 6 3.0195 3.7404 2.4630 16 1 3.5094 4.1158 1.5767 17 6 2.7659 4.5868 3.5214 18 7 2.1688 4.1297 4.6004 19 14 3.2702 6.3827 3.4229 20 1 2.1584 7.1780 2.8428 21 1 3.5801 6.8853 4.7854 22 1 4.4732 6.5124 2.5619 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5401 0.9354 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1317 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 4.2583 -0.1564 0.3667 29 1 4.6874 0.4394 1.9882 30 1 5.8786 2.5366 2.2664 31 1 7.4282 4.1633 1.2586 32 1 7.6905 4.2617 -1.1877 33 1 6.3947 2.7409 -2.6270 34 1 4.8518 1.1081 -1.6188 35 1 1.9907 4.7251 5.3452 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192962903.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:28 Heat of formation + Delta-G solvation = -67.406631 kcal Electronic energy + Delta-G solvation = -20456.424907 eV Core-core repulsion = 17352.347319 eV Total energy + Delta-G solvation = -3104.077588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.15959 -37.71404 -37.39167 -36.10308 -35.15177 -34.31794 -31.79049 -31.67690 -28.24596 -27.71680 -25.47566 -23.33340 -22.24281 -20.78598 -20.61953 -19.15035 -18.29022 -17.57397 -17.08652 -16.90908 -16.23202 -15.83241 -15.74644 -15.61708 -15.30214 -14.59153 -14.17633 -14.03759 -13.94966 -13.56357 -13.32097 -13.07259 -13.03567 -12.80671 -12.46978 -12.43019 -12.34017 -12.24531 -12.19040 -11.91569 -11.69977 -11.25508 -10.95589 -10.25530 -9.87733 -9.69735 -9.57444 -8.73476 -7.44131 0.21459 0.61224 0.61900 1.29703 1.30104 1.44393 1.47466 2.19347 2.58318 2.82040 3.12800 3.78524 3.94862 3.98669 4.06339 4.24435 4.26262 4.30017 4.37777 4.39656 4.62906 4.69335 4.81236 4.83569 4.90174 5.01829 5.14448 5.20407 5.27026 5.32519 5.65742 5.71485 5.73650 5.82280 5.92635 5.95400 6.02878 6.23545 6.80623 8.21558 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.010515 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.413325 B = 2662.131737 C = 4319.389191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.186 4.186 3 C 0.149 3.851 4 N -0.995 5.995 5 C 0.155 3.845 6 C -0.116 4.116 7 C -0.122 4.122 8 C -0.136 4.136 9 C -0.123 4.123 10 C -0.125 4.125 11 C -0.106 4.106 12 S 2.714 3.286 13 O -1.036 7.036 14 O -1.042 7.042 15 C -1.024 5.024 16 H 0.112 0.888 17 C 0.075 3.925 18 N -0.896 5.896 19 Si 0.979 3.021 20 H -0.255 1.255 21 H -0.263 1.263 22 H -0.249 1.249 23 H 0.118 0.882 24 H 0.088 0.912 25 H 0.128 0.872 26 H 0.064 0.936 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.856 -2.983 -14.202 16.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.205 4.205 3 C 0.024 3.976 4 N -0.830 5.830 5 C 0.030 3.970 6 C -0.117 4.117 7 C -0.141 4.141 8 C -0.154 4.154 9 C -0.141 4.141 10 C -0.143 4.143 11 C -0.124 4.124 12 S 2.816 3.184 13 O -1.026 7.026 14 O -1.032 7.032 15 C -1.158 5.158 16 H 0.130 0.870 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.798 3.202 20 H -0.179 1.179 21 H -0.187 1.187 22 H -0.172 1.172 23 H 0.136 0.864 24 H 0.106 0.894 25 H 0.146 0.854 26 H 0.083 0.917 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.143 0.857 32 H 0.163 0.837 33 H 0.170 0.830 34 H 0.165 0.835 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.337 -3.468 -13.307 15.141 hybrid contribution 0.178 1.341 0.556 1.463 sum 6.516 -2.126 -12.751 14.476 Atomic orbital electron populations 1.24054 0.96195 1.02500 0.98848 1.23458 0.96536 0.99187 1.01340 1.20433 0.91240 0.95779 0.90119 1.57544 1.22090 1.73429 1.29969 1.20326 0.79797 0.94815 1.02084 1.20398 0.97576 0.98663 0.95111 1.21256 0.96884 0.96325 0.99651 1.21325 0.99076 0.98565 0.96450 1.21457 1.00068 0.99605 0.92933 1.21483 0.96311 0.95466 1.01055 1.21301 0.98523 0.99437 0.93136 1.00177 0.71918 0.75591 0.70731 1.93299 1.33606 1.89385 1.86330 1.93278 1.71645 1.80529 1.57763 1.30864 1.53892 1.20197 1.10816 0.86982 1.25891 0.89532 1.06230 0.92115 1.70000 1.35906 1.40440 1.06405 0.85284 0.80246 0.75398 0.79304 1.17949 1.18699 1.17170 0.86353 0.89389 0.85372 0.91741 0.87095 0.86357 0.90688 0.88432 0.85661 0.83733 0.83013 0.83498 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.21 14.32 67.79 0.97 -4.23 16 2 C -0.19 -5.51 9.84 25.66 0.25 -5.26 16 3 C 0.15 4.95 5.78 85.64 0.50 5.45 16 4 N -0.99 -39.97 2.75 -523.89 -1.44 -41.42 16 5 C 0.15 5.22 5.80 85.64 0.50 5.72 16 6 C -0.12 -3.72 5.46 -19.86 -0.11 -3.83 16 7 C -0.12 -4.41 9.70 22.27 0.22 -4.20 16 8 C -0.14 -4.13 10.05 22.27 0.22 -3.91 16 9 C -0.12 -2.96 10.05 22.27 0.22 -2.74 16 10 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 11 C -0.11 -2.61 9.37 22.27 0.21 -2.40 16 12 S 2.71 148.75 4.93 -56.49 -0.28 148.47 16 13 O -1.04 -62.49 16.99 -128.00 -2.17 -64.67 16 14 O -1.04 -63.03 16.57 -128.00 -2.12 -65.16 16 15 C -1.02 -57.12 9.75 67.73 0.66 -56.46 16 16 H 0.11 5.83 7.81 -2.91 -0.02 5.81 16 17 C 0.07 4.23 5.46 84.65 0.46 4.69 16 18 N -0.90 -54.29 13.19 21.45 0.28 -54.01 16 19 Si 0.98 42.24 29.54 68.60 2.03 44.27 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 23 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 24 H 0.09 2.77 7.84 -2.91 -0.02 2.75 16 25 H 0.13 3.18 8.06 -2.91 -0.02 3.15 16 26 H 0.06 2.41 7.26 -2.39 -0.02 2.39 16 27 H 0.11 2.81 7.61 -2.39 -0.02 2.79 16 28 H 0.12 2.94 8.05 -2.38 -0.02 2.92 16 29 H 0.07 2.86 6.86 -2.39 -0.02 2.85 16 30 H 0.10 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.15 2.70 7.90 -2.91 -0.02 2.68 16 35 H 0.30 16.23 8.31 -92.70 -0.77 15.46 16 Total: -1.00 -77.13 320.90 1.69 -75.44 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 1.07 Total: 26.77 kcal Atomic # 6 Polarization: -74.03 SS G_CDS: 4.33 Total: -69.71 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -1.16 Total: -95.42 kcal Atomic # 8 Polarization: -125.53 SS G_CDS: -4.30 Total: -129.82 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 148.75 SS G_CDS: -0.28 Total: 148.47 kcal Total: -77.13 1.69 -75.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192962903.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.033 kcal (2) G-P(sol) polarization free energy of solvation -77.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds