Wall clock time and date at job start Tue Mar 31 2020 05:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38264 * 120.02669 * 2 1 4 4 C 1.38103 * 119.93150 * 180.02562 * 3 2 1 5 5 C 1.38499 * 120.21678 * 359.97438 * 4 3 2 6 6 C 1.38218 * 119.84798 * 0.02562 * 5 4 3 7 7 C 1.38102 * 120.04052 * 180.02562 * 2 1 3 8 8 C 1.51378 * 109.75474 * 180.02562 * 6 5 4 9 9 H 1.08999 * 110.29706 * 223.79253 * 8 6 5 10 10 N 1.46493 * 110.30285 * 101.73529 * 8 6 5 11 11 S 1.65601 * 119.99772 * 146.37089 * 10 8 6 12 12 O 1.42101 * 106.40318 * 311.46297 * 11 10 8 13 13 O 1.42100 * 106.40446 * 178.54130 * 11 10 8 14 14 C 1.76202 * 107.21908 * 64.99956 * 11 10 8 15 15 H 1.08005 * 119.99646 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00219 * 179.97438 * 14 11 10 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 C 1.54350 * 105.25607 * 342.76086 * 8 6 5 23 23 C 1.51370 * 130.39015 * 180.02562 * 5 4 3 24 24 H 1.09007 * 109.47101 * 269.97225 * 1 2 3 25 25 H 1.08991 * 109.47773 * 29.97670 * 1 2 3 26 26 H 1.09006 * 109.47256 * 149.97926 * 1 2 3 27 27 H 1.07994 * 120.03503 * 0.02562 * 3 2 1 28 28 H 1.07996 * 119.89288 * 180.02562 * 4 3 2 29 29 H 1.07996 * 119.88645 * 359.97438 * 7 2 1 30 30 H 0.96999 * 120.00256 * 326.37033 * 10 8 6 31 31 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 32 32 H 1.08992 * 110.82146 * 144.62496 * 22 8 6 33 33 H 1.09000 * 110.82284 * 268.17474 * 22 8 6 34 34 H 1.08997 * 110.30481 * 316.10874 * 23 5 4 35 35 H 1.08995 * 110.30292 * 78.26098 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1988 1.1971 0.0000 4 6 3.5798 1.1948 -0.0005 5 6 4.2748 -0.0032 -0.0005 6 6 3.5831 -1.1998 -0.0005 7 6 2.1983 -1.1955 -0.0005 8 6 4.5605 -2.3558 0.0001 9 1 4.2414 -3.1211 -0.7073 10 7 4.6748 -2.9241 1.3455 11 16 4.9332 -4.5483 1.5390 12 8 3.9868 -5.2070 0.7084 13 8 5.0301 -4.7753 2.9384 14 6 6.5213 -4.9077 0.8655 15 1 7.1166 -4.1164 0.4342 16 6 7.0044 -6.1988 0.8899 17 7 6.2798 -7.1622 1.4155 18 14 8.6877 -6.5798 0.1753 19 1 8.9717 -8.0299 0.3233 20 1 9.7214 -5.7963 0.8983 21 1 8.7081 -6.2163 -1.2644 22 6 5.9089 -1.7478 -0.4408 23 6 5.7643 -0.2730 -0.0005 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6598 2.1329 0.0004 28 1 4.1196 2.1302 -0.0001 29 1 1.6571 -2.1301 -0.0005 30 1 4.5991 -2.3490 2.1229 31 1 5.4055 -6.9644 1.7863 32 1 6.7386 -2.2289 0.0769 33 1 6.0314 -1.8194 -1.5216 34 1 6.2678 0.3844 -0.7092 35 1 6.1735 -0.1358 1.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995459.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:43 Heat of formation + Delta-G solvation = -81.802162 kcal Electronic energy + Delta-G solvation = -20006.986329 eV Core-core repulsion = 16902.284504 eV Total energy + Delta-G solvation = -3104.701825 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17711 -36.61004 -35.48978 -34.38578 -33.35167 -32.95419 -30.92734 -30.27275 -26.81856 -25.55699 -25.33822 -22.46811 -20.64858 -20.09386 -19.37900 -18.11331 -16.64027 -15.96657 -15.62480 -15.12507 -14.67245 -14.59177 -14.29155 -13.93540 -13.71219 -13.47670 -13.18072 -12.97702 -12.56603 -12.26872 -12.12037 -11.61104 -11.41701 -11.21303 -11.09140 -11.01247 -10.83477 -10.76040 -10.61854 -10.51215 -10.37569 -10.30841 -9.18832 -9.07159 -8.76347 -8.38136 -8.30581 -7.17864 -5.39660 1.33008 1.42608 2.18484 3.22787 3.23641 3.44434 3.74342 4.15857 4.44141 4.52355 4.68873 4.73727 4.86680 5.04815 5.12400 5.29230 5.32438 5.47291 5.50255 5.52879 5.55751 5.71152 5.75676 5.88728 5.92296 6.10153 6.16037 6.19847 6.29041 6.33633 6.52252 6.61902 6.67270 6.79512 7.05692 7.59650 7.77324 8.04774 8.62131 10.19753 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027595 B = 0.005331 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.441276 B = 5251.235177 C = 5871.619230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.118 4.118 4 C -0.111 4.111 5 C -0.090 4.090 6 C -0.094 4.094 7 C -0.092 4.092 8 C 0.197 3.803 9 H 0.101 0.899 10 N -1.117 6.117 11 S 2.688 3.312 12 O -1.013 7.013 13 O -1.013 7.013 14 C -1.083 5.083 15 H 0.106 0.894 16 C 0.090 3.910 17 N -0.844 5.844 18 Si 1.079 2.921 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.275 1.275 22 C -0.141 4.141 23 C -0.081 4.081 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.404 0.596 31 H 0.276 0.724 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.306 16.084 -4.822 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.136 4.136 4 C -0.129 4.129 5 C -0.091 4.091 6 C -0.096 4.096 7 C -0.110 4.110 8 C 0.089 3.911 9 H 0.119 0.881 10 N -0.869 5.869 11 S 2.790 3.210 12 O -1.003 7.003 13 O -1.003 7.003 14 C -1.218 5.218 15 H 0.124 0.876 16 C -0.129 4.129 17 N -0.473 5.473 18 Si 0.902 3.098 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.180 4.180 23 C -0.118 4.118 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.235 0.765 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.916 14.131 -4.815 15.434 hybrid contribution -0.626 1.824 0.365 1.962 sum -4.542 15.955 -4.450 17.175 Atomic orbital electron populations 1.20756 0.91190 1.02623 1.02250 1.19782 0.95958 0.92896 1.00904 1.20882 0.93845 0.97331 1.01556 1.20553 0.93824 0.96860 1.01671 1.20691 0.96286 0.93105 0.99020 1.20737 0.93564 0.95430 0.99882 1.20639 0.92984 0.97873 0.99546 1.19954 0.92328 0.93909 0.84957 0.88126 1.55739 1.90913 1.29005 1.11289 1.01060 0.76606 0.69948 0.73401 1.93414 1.64994 1.72032 1.69837 1.93430 1.89346 1.83160 1.34372 1.31477 1.26483 1.05043 1.58771 0.87628 1.25958 1.05311 0.90403 0.91184 1.70849 1.11765 1.35366 1.29362 0.83453 0.72567 0.77147 0.76615 1.19673 1.20121 1.20065 1.22966 0.98528 0.94664 1.01882 1.21111 0.91357 0.97246 1.02077 0.91303 0.91736 0.91478 0.86170 0.86401 0.85917 0.76544 0.91201 0.88633 0.90148 0.90812 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.00 0.36 -0.71 16 2 C -0.10 -1.19 5.88 -104.67 -0.62 -1.80 16 3 C -0.12 -1.35 9.70 -39.62 -0.38 -1.73 16 4 C -0.11 -1.33 10.04 -39.53 -0.40 -1.72 16 5 C -0.09 -1.24 6.14 -104.20 -0.64 -1.88 16 6 C -0.09 -1.48 5.70 -104.20 -0.59 -2.07 16 7 C -0.09 -1.36 9.70 -39.54 -0.38 -1.74 16 8 C 0.20 3.46 3.52 -68.05 -0.24 3.22 16 9 H 0.10 1.90 7.56 -51.93 -0.39 1.51 16 10 N -1.12 -22.22 5.51 -4.99 -0.03 -22.25 16 11 S 2.69 69.70 4.36 -107.50 -0.47 69.24 16 12 O -1.01 -28.76 17.01 -57.17 -0.97 -29.73 16 13 O -1.01 -29.13 17.64 -57.17 -1.01 -30.14 16 14 C -1.08 -29.08 9.72 30.60 0.30 -28.78 16 15 H 0.11 2.54 6.15 -52.48 -0.32 2.22 16 16 C 0.09 2.52 5.46 -17.82 -0.10 2.42 16 17 N -0.84 -25.70 13.66 55.43 0.76 -24.94 16 18 Si 1.08 23.57 29.90 -169.99 -5.08 18.48 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 22 C -0.14 -2.13 6.80 -25.19 -0.17 -2.30 16 23 C -0.08 -1.03 6.77 -26.72 -0.18 -1.21 16 24 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 25 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 26 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 29 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.40 7.23 8.84 -34.47 -0.30 6.93 16 31 H 0.28 8.66 6.52 -40.82 -0.27 8.39 16 32 H 0.10 1.53 6.41 -51.93 -0.33 1.20 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 307.23 15.07 4.63 4.63 Total: -1.00 -34.37 307.23 -9.43 -43.80 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.21 Total: 9.21 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: -3.04 Total: -38.30 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.73 Total: -47.19 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -1.98 Total: -59.87 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.08 Total: 18.48 kcal Atomic # 16 Polarization: 69.70 SS G_CDS: -0.47 Total: 69.24 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.37 -9.43 -43.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995459.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.001 kcal (2) G-P(sol) polarization free energy of solvation -34.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds