Wall clock time and date at job start Tue Mar 31 2020 05:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 120.03142 * 2 1 4 4 C 1.38105 * 119.93674 * 180.02562 * 3 2 1 5 5 C 1.38497 * 120.21201 * 0.02562 * 4 3 2 6 6 C 1.38217 * 119.85243 * 359.97421 * 5 4 3 7 7 C 1.38101 * 120.03705 * 180.02562 * 2 1 3 8 8 C 1.51370 * 109.76003 * 180.02562 * 6 5 4 9 9 H 1.08998 * 110.30223 * 136.22285 * 8 6 5 10 10 N 1.46500 * 110.30205 * 258.27579 * 8 6 5 11 11 S 1.65601 * 119.99784 * 214.99817 * 10 8 6 12 12 O 1.42103 * 106.40337 * 178.54014 * 11 10 8 13 13 O 1.42099 * 106.40603 * 311.46603 * 11 10 8 14 14 C 1.76207 * 107.21546 * 65.00148 * 11 10 8 15 15 H 1.07997 * 120.00093 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99839 * 179.97438 * 14 11 10 17 17 N 1.31520 * 120.00016 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 120.00176 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.47097 * 60.00087 * 18 16 14 20 20 H 1.48499 * 109.47381 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47172 * 300.00341 * 18 16 14 22 22 C 1.54345 * 105.17333 * 17.20295 * 8 6 5 23 23 C 1.51374 * 130.39075 * 180.02562 * 5 4 3 24 24 H 1.09006 * 109.46835 * 89.99677 * 1 2 3 25 25 H 1.08992 * 109.47374 * 209.99945 * 1 2 3 26 26 H 1.08994 * 109.47005 * 330.00487 * 1 2 3 27 27 H 1.08005 * 120.03512 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.89764 * 179.72487 * 4 3 2 29 29 H 1.08011 * 119.88738 * 359.97438 * 7 2 1 30 30 H 0.96995 * 120.00015 * 35.00443 * 10 8 6 31 31 H 0.96997 * 119.99716 * 180.02562 * 17 16 14 32 32 H 1.08996 * 110.82569 * 91.88000 * 22 8 6 33 33 H 1.08995 * 110.82086 * 215.23685 * 22 8 6 34 34 H 1.08996 * 110.31116 * 43.82482 * 23 5 4 35 35 H 1.08996 * 110.37153 * 281.72016 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1969 0.0000 4 6 3.5800 1.1946 -0.0005 5 6 4.2749 -0.0034 -0.0016 6 6 3.5832 -1.2000 -0.0016 7 6 2.1983 -1.1955 -0.0005 8 6 4.5604 -2.3560 -0.0022 9 1 4.2412 -3.1215 0.7050 10 7 4.6748 -2.9241 -1.3477 11 16 4.8992 -4.5533 -1.5422 12 8 4.9355 -4.7890 -2.9431 13 8 5.9548 -4.9206 -0.6647 14 6 3.4501 -5.3549 -0.9402 15 1 2.6349 -4.7690 -0.5420 16 6 3.3567 -6.7300 -0.9784 17 7 4.3493 -7.4433 -1.4637 18 14 1.8208 -7.5798 -0.3395 19 1 0.6411 -7.1184 -1.1145 20 1 1.9691 -9.0496 -0.4908 21 1 1.6314 -7.2470 1.0953 22 6 5.9081 -1.7459 0.4379 23 6 5.7644 -0.2733 -0.0018 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6600 2.1329 -0.0004 28 1 4.1198 2.1300 -0.0050 29 1 1.6570 -2.1302 -0.0005 30 1 4.6193 -2.3460 -2.1246 31 1 4.2833 -8.4107 -1.4908 32 1 6.0313 -1.8174 1.5186 33 1 6.7385 -2.2281 -0.0778 34 1 6.2682 0.3842 0.7066 35 1 6.1747 -0.1359 -1.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995460.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:46 Heat of formation + Delta-G solvation = -79.873553 kcal Electronic energy + Delta-G solvation = -20020.136218 eV Core-core repulsion = 16915.518024 eV Total energy + Delta-G solvation = -3104.618194 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.10324 -36.52442 -35.14544 -33.93105 -33.16476 -32.91252 -30.84995 -30.18937 -26.71722 -26.12870 -25.27805 -22.39708 -20.56769 -20.00496 -19.04932 -17.37773 -16.47033 -16.07806 -15.52310 -15.12434 -14.93732 -14.41841 -14.09078 -13.92577 -13.61547 -13.25610 -13.09485 -12.91375 -12.23750 -12.07601 -11.98180 -11.52221 -11.41807 -11.27926 -11.20032 -11.18142 -10.74285 -10.68180 -10.62734 -10.28001 -10.17302 -10.14298 -9.23478 -9.06291 -8.68945 -8.50804 -8.27393 -6.69611 -5.31559 1.41435 1.50587 2.38913 3.08286 3.12946 3.18345 3.82366 4.07579 4.52075 4.64763 4.73141 4.86790 4.93597 5.12003 5.19209 5.35086 5.42879 5.54194 5.58680 5.60865 5.76066 5.82832 5.84429 5.97312 5.98659 6.17118 6.24240 6.28914 6.37519 6.53175 6.62060 6.70241 6.80578 6.92630 7.13472 7.32747 7.90797 7.98512 8.89274 10.24671 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.006422 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.196498 B = 4358.721957 C = 5436.367928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.092 4.092 6 C -0.094 4.094 7 C -0.090 4.090 8 C 0.199 3.801 9 H 0.099 0.901 10 N -1.124 6.124 11 S 2.714 3.286 12 O -1.007 7.007 13 O -1.004 7.004 14 C -1.021 5.021 15 H 0.101 0.899 16 C 0.134 3.866 17 N -0.845 5.845 18 Si 0.919 3.081 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.264 1.264 22 C -0.135 4.135 23 C -0.081 4.081 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.125 0.875 30 H 0.402 0.598 31 H 0.291 0.709 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 15.081 4.688 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.093 4.093 6 C -0.095 4.095 7 C -0.109 4.109 8 C 0.090 3.910 9 H 0.117 0.883 10 N -0.876 5.876 11 S 2.814 3.186 12 O -0.997 6.997 13 O -0.994 6.994 14 C -1.154 5.154 15 H 0.119 0.881 16 C -0.084 4.084 17 N -0.475 5.475 18 Si 0.743 3.257 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.174 4.174 23 C -0.118 4.118 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.143 0.857 30 H 0.232 0.768 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.340 14.367 4.425 15.399 hybrid contribution -1.500 -0.180 0.191 1.523 sum -4.840 14.186 4.617 15.684 Atomic orbital electron populations 1.20755 0.91258 1.02549 1.02267 1.19780 0.95923 0.92929 1.00861 1.20863 0.93831 0.97305 1.01728 1.20533 0.93818 0.96805 1.01819 1.20667 0.96188 0.93165 0.99299 1.20792 0.93609 0.95529 0.99606 1.20663 0.93000 0.97925 0.99277 1.19915 0.92084 0.93804 0.85150 0.88266 1.56092 1.91947 1.28523 1.11012 1.00471 0.75683 0.69378 0.73117 1.93375 1.89051 1.83088 1.34233 1.93365 1.57442 1.80843 1.67758 1.30534 1.24550 1.02168 1.58185 0.88063 1.24731 0.97308 0.96289 0.90110 1.69890 1.31106 1.09162 1.37316 0.86230 0.81492 0.77965 0.80059 1.18886 1.20101 1.18835 1.22800 0.98468 0.94400 1.01759 1.21073 0.91496 0.97302 1.01948 0.91280 0.91475 0.91841 0.86284 0.86526 0.85722 0.76770 0.89840 0.90271 0.89234 0.90910 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 36.01 0.36 -0.76 16 2 C -0.09 -1.21 5.88 -104.67 -0.62 -1.83 16 3 C -0.12 -1.40 9.70 -39.62 -0.38 -1.78 16 4 C -0.11 -1.36 10.04 -39.53 -0.40 -1.75 16 5 C -0.09 -1.28 6.14 -104.20 -0.64 -1.92 16 6 C -0.09 -1.48 5.70 -104.21 -0.59 -2.07 16 7 C -0.09 -1.35 9.70 -39.54 -0.38 -1.74 16 8 C 0.20 3.51 3.40 -68.05 -0.23 3.28 16 9 H 0.10 1.84 7.94 -51.93 -0.41 1.43 16 10 N -1.12 -22.50 5.50 -4.99 -0.03 -22.53 16 11 S 2.71 71.44 4.94 -107.50 -0.53 70.91 16 12 O -1.01 -29.65 18.02 -57.17 -1.03 -30.68 16 13 O -1.00 -28.77 17.78 -57.17 -1.02 -29.78 16 14 C -1.02 -27.83 9.65 30.60 0.30 -27.53 16 15 H 0.10 2.50 7.81 -52.49 -0.41 2.09 16 16 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 17 N -0.85 -24.84 13.19 55.43 0.73 -24.10 16 18 Si 0.92 20.49 29.54 -169.99 -5.02 15.47 16 19 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 22 C -0.13 -2.06 6.78 -25.32 -0.17 -2.23 16 23 C -0.08 -1.04 6.77 -26.84 -0.18 -1.22 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 26 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 27 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 30 H 0.40 7.24 8.85 -34.47 -0.31 6.93 16 31 H 0.29 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 313.43 15.07 4.72 4.72 Total: -1.00 -34.47 313.43 -9.69 -44.16 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.48 Total: 7.76 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: -3.04 Total: -35.93 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.70 Total: -46.63 kcal Atomic # 8 Polarization: -58.42 SS G_CDS: -2.05 Total: -60.46 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 71.44 SS G_CDS: -0.53 Total: 70.91 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.47 -9.69 -44.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995460.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.712 kcal (2) G-P(sol) polarization free energy of solvation -34.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds