Wall clock time and date at job start Tue Mar 31 2020 05:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38253 * 120.00354 * 2 1 4 4 C 1.38213 * 120.00478 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99582 * 359.97438 * 4 3 2 6 6 C 1.38208 * 120.00110 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.99933 * 179.97438 * 6 5 4 8 8 N 1.46500 * 115.55197 * 170.44450 * 7 6 5 9 9 S 1.65604 * 120.00246 * 188.22861 * 8 7 6 10 10 O 1.42099 * 106.39818 * 312.96139 * 9 8 7 11 11 O 1.42103 * 106.39939 * 180.02562 * 9 8 7 12 12 C 1.76202 * 107.21857 * 66.50220 * 9 8 7 13 13 H 1.08001 * 120.00050 * 11.46559 * 12 9 8 14 14 C 1.37874 * 119.99860 * 191.47243 * 12 9 8 15 15 N 1.31516 * 119.99862 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00012 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47498 * 89.99645 * 16 14 12 18 18 H 1.48510 * 109.46886 * 209.99828 * 16 14 12 19 19 H 1.48495 * 109.46912 * 329.99401 * 16 14 12 20 20 C 1.53007 * 117.50182 * 316.11208 * 7 6 5 21 21 C 1.52999 * 117.50257 * 24.77192 * 7 6 5 22 22 C 1.38215 * 120.00050 * 180.26822 * 2 1 3 23 23 H 1.09006 * 109.46893 * 90.00415 * 1 2 3 24 24 H 1.08995 * 109.47474 * 210.00292 * 1 2 3 25 25 H 1.08996 * 109.47253 * 330.00625 * 1 2 3 26 26 H 1.07997 * 119.99608 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.00431 * 179.97438 * 4 3 2 28 28 H 1.07998 * 119.99892 * 179.97438 * 5 4 3 29 29 H 0.97003 * 119.99867 * 8.21640 * 8 7 6 30 30 H 0.97008 * 119.99872 * 180.02562 * 15 14 12 31 31 H 1.08996 * 117.50008 * 215.00851 * 20 7 6 32 32 H 1.08995 * 117.49100 * 0.02562 * 20 7 6 33 33 H 1.08999 * 117.49394 * 359.97438 * 21 7 6 34 34 H 1.08997 * 117.50328 * 144.97136 * 21 7 6 35 35 H 1.08001 * 119.99609 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0011 8 7 3.5213 -3.7011 0.2183 9 16 4.2546 -5.1689 0.4425 10 8 5.2395 -5.2849 -0.5751 11 8 3.2104 -6.1152 0.6255 12 6 5.1261 -5.0884 1.9718 13 1 4.9579 -4.2619 2.6464 14 6 6.0230 -6.0805 2.3071 15 7 6.2275 -7.0871 1.4858 16 14 6.9464 -5.9956 3.9286 17 1 6.1635 -6.6914 4.9813 18 1 8.2697 -6.6531 3.7797 19 1 7.1404 -4.5746 4.3139 20 6 5.5340 -2.6247 -0.9425 21 6 5.7547 -2.4980 0.5670 22 6 2.1981 -1.1970 -0.0056 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 1.6583 2.1325 -0.0004 27 1 4.1205 2.1325 -0.0010 28 1 5.3517 -0.0002 -0.0014 29 1 2.5536 -3.6351 0.2325 30 1 6.8582 -7.7853 1.7219 31 1 5.7186 -3.5974 -1.3985 32 1 5.7786 -1.7612 -1.5610 33 1 6.1444 -1.5512 0.9407 34 1 6.0844 -3.3871 1.1044 35 1 1.6580 -2.1322 -0.0104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193005262.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:25 Heat of formation + Delta-G solvation = -62.348115 kcal Electronic energy + Delta-G solvation = -20140.191101 eV Core-core repulsion = 17036.332867 eV Total energy + Delta-G solvation = -3103.858234 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.89998 -38.62248 -37.27446 -36.17969 -35.22726 -33.73461 -32.67686 -31.60073 -28.36981 -27.62310 -24.53325 -23.29311 -22.78917 -20.94699 -20.69155 -19.32778 -18.85695 -17.69423 -16.95304 -16.80036 -16.02341 -15.89227 -15.69034 -15.27965 -14.89658 -14.65051 -14.44394 -14.01706 -13.71984 -13.46923 -13.41047 -13.06570 -13.00491 -12.71089 -12.64299 -12.49253 -12.40730 -12.29637 -12.17303 -11.84364 -11.61961 -11.27125 -11.20381 -10.96835 -10.21605 -9.60338 -9.23267 -8.74121 -7.44694 0.26972 0.41001 0.50148 1.34376 1.35357 1.51128 2.20073 2.57529 2.68777 2.77155 3.24087 3.48118 3.67611 3.77795 3.99813 4.08121 4.17370 4.29263 4.37645 4.50728 4.52763 4.63837 4.85487 4.86889 4.89078 5.00227 5.07555 5.12918 5.26262 5.32376 5.35793 5.50697 5.61129 5.70181 5.74349 5.91708 6.13983 6.28379 6.77471 8.20976 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023947 B = 0.005575 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.987167 B = 5021.122898 C = 5313.232350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.129 4.129 4 C -0.108 4.108 5 C -0.130 4.130 6 C -0.047 4.047 7 C 0.150 3.850 8 N -1.094 6.094 9 S 2.716 3.284 10 O -1.016 7.016 11 O -1.053 7.053 12 C -1.028 5.028 13 H 0.120 0.880 14 C 0.075 3.925 15 N -0.886 5.886 16 Si 0.986 3.014 17 H -0.259 1.259 18 H -0.263 1.263 19 H -0.245 1.245 20 C -0.201 4.201 21 C -0.211 4.211 22 C -0.139 4.139 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.149 0.851 27 H 0.153 0.847 28 H 0.137 0.863 29 H 0.413 0.587 30 H 0.298 0.702 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 18.087 -0.492 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.126 4.126 5 C -0.148 4.148 6 C -0.048 4.048 7 C 0.059 3.941 8 N -0.849 5.849 9 S 2.818 3.182 10 O -1.006 7.006 11 O -1.044 7.044 12 C -1.162 5.162 13 H 0.138 0.862 14 C -0.139 4.139 15 N -0.517 5.517 16 Si 0.804 3.196 17 H -0.184 1.184 18 H -0.187 1.187 19 H -0.168 1.168 20 C -0.240 4.240 21 C -0.249 4.249 22 C -0.157 4.157 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.167 0.833 27 H 0.171 0.829 28 H 0.155 0.845 29 H 0.248 0.752 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.722 17.141 -1.197 17.820 hybrid contribution 0.210 -0.550 1.023 1.181 sum -4.512 16.591 -0.174 17.195 Atomic orbital electron populations 1.20850 0.89450 1.03619 1.03139 1.20186 0.97443 0.92569 0.98672 1.21383 0.94521 0.98014 1.00711 1.21424 0.94574 0.98082 0.98506 1.21139 1.00954 0.91333 1.01399 1.18985 0.93623 0.91608 1.00608 1.18823 0.85377 0.84285 1.05565 1.55025 1.16898 1.23183 1.89761 1.00095 0.72139 0.69836 0.76162 1.93261 1.61149 1.85265 1.60936 1.93315 1.60931 1.61108 1.89039 1.30787 1.39758 1.18322 1.27330 0.86216 1.25914 0.94356 0.91526 1.02058 1.70016 1.33102 1.10556 1.38031 0.85183 0.77594 0.80598 0.76193 1.18375 1.18673 1.16822 1.24206 1.00152 1.05684 0.93918 1.24257 0.96817 1.06457 0.97353 1.20939 0.93431 0.98617 1.02736 0.90259 0.91709 0.89703 0.83305 0.82927 0.84519 0.75243 0.89141 0.87383 0.85904 0.85102 0.87173 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 10.01 71.24 0.71 -1.16 16 2 C -0.09 -1.98 5.88 -19.87 -0.12 -2.10 16 3 C -0.13 -2.42 9.70 22.27 0.22 -2.21 16 4 C -0.11 -2.09 10.05 22.27 0.22 -1.87 16 5 C -0.13 -3.19 8.83 22.27 0.20 -2.99 16 6 C -0.05 -1.42 5.66 -19.87 -0.11 -1.53 16 7 C 0.15 5.58 3.28 2.86 0.01 5.59 16 8 N -1.09 -46.52 6.01 -155.18 -0.93 -47.45 16 9 S 2.72 147.64 4.70 -56.49 -0.27 147.37 16 10 O -1.02 -59.46 14.03 -128.00 -1.80 -61.25 16 11 O -1.05 -64.13 18.02 -128.00 -2.31 -66.44 16 12 C -1.03 -55.76 6.94 67.73 0.47 -55.29 16 13 H 0.12 5.96 7.67 -2.91 -0.02 5.94 16 14 C 0.08 4.11 5.45 84.65 0.46 4.57 16 15 N -0.89 -52.02 12.84 21.45 0.28 -51.74 16 16 Si 0.99 40.72 29.54 68.60 2.03 42.75 16 17 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 18 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 19 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 20 C -0.20 -7.51 9.20 30.62 0.28 -7.23 16 21 C -0.21 -7.88 8.92 30.62 0.27 -7.60 16 22 C -0.14 -3.93 9.11 22.27 0.20 -3.73 16 23 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.06 1.10 8.09 -2.39 -0.02 1.08 16 25 H 0.08 1.05 8.09 -2.39 -0.02 1.04 16 26 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 27 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 28 H 0.14 2.94 6.53 -2.91 -0.02 2.92 16 29 H 0.41 15.53 6.68 -96.74 -0.65 14.89 16 30 H 0.30 15.77 8.31 -92.70 -0.77 15.00 16 31 H 0.11 4.90 5.37 -2.39 -0.01 4.89 16 32 H 0.12 3.64 7.91 -2.39 -0.02 3.62 16 33 H 0.13 3.83 6.79 -2.39 -0.02 3.81 16 34 H 0.11 4.92 4.65 -2.39 -0.01 4.91 16 35 H 0.12 3.26 6.14 -2.91 -0.02 3.24 16 Total: -1.00 -74.17 299.97 0.30 -73.86 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: 0.48 Total: 38.45 kcal Atomic # 6 Polarization: -78.37 SS G_CDS: 2.82 Total: -75.55 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -0.66 Total: -99.20 kcal Atomic # 8 Polarization: -123.58 SS G_CDS: -4.10 Total: -127.69 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Atomic # 16 Polarization: 147.64 SS G_CDS: -0.27 Total: 147.37 kcal Total: -74.17 0.30 -73.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193005262.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.515 kcal (2) G-P(sol) polarization free energy of solvation -74.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds