Wall clock time and date at job start Tue Mar 31 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 S 1.76208 * 119.99935 * 2 1 4 4 O 1.42102 * 106.39842 * 7.91964 * 3 2 1 5 5 O 1.42096 * 106.40297 * 234.99831 * 3 2 1 6 6 N 1.65603 * 107.21537 * 121.45531 * 3 2 1 7 7 C 1.46495 * 120.00270 * 276.46068 * 6 3 2 8 8 C 1.50710 * 109.47271 * 265.00440 * 7 6 3 9 9 H 1.08003 * 119.99610 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00157 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99941 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00007 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47350 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47354 * 119.99874 * 12 10 8 15 15 H 1.48505 * 109.47311 * 239.99979 * 12 10 8 16 16 C 1.46497 * 119.99696 * 96.46614 * 6 3 2 17 17 C 1.50707 * 109.47012 * 264.99410 * 16 6 3 18 18 C 1.38238 * 119.99792 * 90.00154 * 17 16 6 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.98090 * 17 16 6 23 23 H 1.08003 * 119.99952 * 180.02562 * 1 2 3 24 24 H 1.08005 * 120.00475 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00135 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47348 * 25.00296 * 7 6 3 27 27 H 1.08999 * 109.47483 * 145.00192 * 7 6 3 28 28 H 0.96997 * 119.99878 * 179.97438 * 11 10 8 29 29 H 1.09005 * 109.47643 * 144.99871 * 16 6 3 30 30 H 1.09000 * 109.47513 * 24.99035 * 16 6 3 31 31 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 32 32 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 33 33 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 34 34 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 35 35 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 16 2.1910 1.5260 0.0000 4 8 1.2222 2.5485 0.1878 5 8 3.0687 1.4826 -1.1166 6 7 3.1509 1.5378 1.3494 7 6 2.5951 1.9515 2.6401 8 6 2.8804 3.4143 2.8643 9 1 3.4220 3.9791 2.1198 10 6 2.4510 4.0312 4.0201 11 7 1.7920 3.3433 4.9268 12 14 2.8052 5.8440 4.2982 13 1 3.5564 6.3854 3.1372 14 1 1.5249 6.5814 4.4474 15 1 3.6166 6.0064 5.5314 16 6 4.5559 1.1345 1.2522 17 6 4.6862 -0.3231 1.6122 18 6 4.5810 -1.2898 0.6297 19 6 4.7011 -2.6268 0.9598 20 6 4.9268 -2.9971 2.2723 21 6 5.0266 -2.0307 3.2557 22 6 4.9112 -0.6935 2.9249 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5401 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.5176 1.7872 2.6413 27 1 3.0528 1.3658 3.4374 28 1 1.4903 3.7772 5.7401 29 1 5.1542 1.7332 1.9392 30 1 4.9089 1.2898 0.2328 31 1 4.4051 -1.0005 -0.3959 32 1 4.6185 -3.3820 0.1922 33 1 5.0210 -4.0416 2.5301 34 1 5.1986 -2.3202 4.2819 35 1 4.9941 0.0618 3.6924 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198566180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:12 Heat of formation + Delta-G solvation = -22.817236 kcal Electronic energy + Delta-G solvation = -20223.361079 eV Core-core repulsion = 17121.217033 eV Total energy + Delta-G solvation = -3102.144046 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.10045 -36.60268 -35.72349 -35.21677 -33.18690 -32.70177 -30.95412 -30.68832 -27.35721 -25.13231 -22.74727 -22.12413 -22.02622 -20.91478 -18.09766 -17.16524 -16.88899 -16.23888 -16.10206 -15.64464 -14.98752 -14.75350 -14.58285 -14.00757 -13.67376 -13.21345 -13.14897 -12.50569 -12.35869 -12.27547 -12.11750 -11.65273 -11.41740 -11.25128 -11.14284 -11.10089 -10.84353 -10.61244 -10.53978 -10.36563 -10.28304 -9.99659 -9.73732 -8.72740 -8.59066 -8.45650 -8.11778 -6.07554 -4.11202 0.99663 1.54256 1.60141 1.68673 3.30774 3.38782 3.43876 3.62659 4.06197 4.31889 4.44627 4.92078 5.05717 5.06747 5.17495 5.25379 5.28157 5.34273 5.50699 5.53294 5.71376 5.81732 6.10001 6.12605 6.19030 6.26330 6.37825 6.41878 6.63318 6.69177 6.91065 7.19204 7.21750 7.35807 7.54661 7.90224 8.18138 8.91833 9.54072 11.01009 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015225 B = 0.007291 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.641183 B = 3839.444270 C = 4915.384767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 C -0.739 4.739 3 S 2.671 3.329 4 O -0.947 6.947 5 O -0.979 6.979 6 N -0.976 5.976 7 C 0.256 3.744 8 C -0.525 4.525 9 H 0.063 0.937 10 C 0.062 3.938 11 N -0.896 5.896 12 Si 0.897 3.103 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.157 3.843 17 C -0.098 4.098 18 C -0.121 4.121 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.093 4.093 23 H 0.107 0.893 24 H 0.123 0.877 25 H 0.151 0.849 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.263 0.737 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 -11.560 -5.846 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.843 4.843 3 S 2.760 3.240 4 O -0.937 6.937 5 O -0.970 6.970 6 N -0.814 5.814 7 C 0.135 3.865 8 C -0.565 4.565 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.535 5.535 12 Si 0.724 3.276 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.211 1.211 16 C 0.031 3.969 17 C -0.100 4.100 18 C -0.140 4.140 19 C -0.145 4.145 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.112 4.112 23 H 0.125 0.875 24 H 0.141 0.859 25 H 0.169 0.831 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.166 -10.895 -6.284 12.970 hybrid contribution -0.164 -0.036 0.688 0.708 sum 3.002 -10.931 -5.596 12.641 Atomic orbital electron populations 1.24164 0.95235 1.03798 0.83691 1.33903 1.09103 1.26545 1.14798 1.02528 0.73776 0.74616 0.73117 1.93608 1.61401 1.53250 1.85438 1.93502 1.65419 1.87687 1.50366 1.57416 1.18143 1.79764 1.26032 1.19108 0.93898 0.95413 0.78126 1.21524 1.36292 0.94777 1.03897 0.91873 1.24921 0.94892 0.98390 0.95808 1.69931 1.38139 1.36314 1.09143 0.86461 0.78126 0.84968 0.78005 1.19593 1.20862 1.21053 1.20209 0.83508 0.89823 1.03354 1.20570 0.98837 0.96813 0.93785 1.21231 1.00386 0.92929 0.99458 1.21067 1.01099 0.95907 0.96388 1.21093 1.00941 0.99073 0.93319 1.21167 1.00573 0.93190 0.99167 1.21246 0.97666 0.96222 0.96080 0.87464 0.85913 0.83098 0.94645 0.94286 0.92773 0.88376 0.89075 0.85825 0.86483 0.86617 0.86275 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.42 14.22 29.02 0.41 -0.01 16 2 C -0.74 -11.78 10.32 29.02 0.30 -11.48 16 3 S 2.67 52.40 5.75 -107.50 -0.62 51.78 16 4 O -0.95 -21.82 16.12 -57.17 -0.92 -22.74 16 5 O -0.98 -19.73 16.47 -57.17 -0.94 -20.67 16 6 N -0.98 -19.72 2.75 -116.94 -0.32 -20.04 16 7 C 0.26 6.18 5.09 -5.19 -0.03 6.15 16 8 C -0.53 -14.24 9.38 -34.44 -0.32 -14.56 16 9 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.90 -25.50 13.29 55.43 0.74 -24.77 16 12 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.16 2.71 5.78 -5.19 -0.03 2.68 16 17 C -0.10 -1.53 5.46 -104.62 -0.57 -2.10 16 18 C -0.12 -1.72 9.37 -39.58 -0.37 -2.09 16 19 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 20 C -0.13 -1.53 10.05 -39.58 -0.40 -1.92 16 21 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 22 C -0.09 -1.42 9.37 -39.58 -0.37 -1.79 16 23 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 24 H 0.12 1.74 7.21 -52.48 -0.38 1.36 16 25 H 0.15 2.16 7.72 -52.49 -0.41 1.75 16 26 H 0.04 0.91 7.79 -51.93 -0.40 0.51 16 27 H 0.04 0.95 7.61 -51.93 -0.40 0.55 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.10 1.68 8.05 -51.93 -0.42 1.26 16 30 H 0.09 1.47 6.82 -51.93 -0.35 1.12 16 31 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.13 2.00 7.90 -52.49 -0.41 1.59 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -31.88 319.34 -8.97 -40.86 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.43 Total: 1.86 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -2.27 Total: -27.50 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.41 Total: -44.81 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -1.86 Total: -43.42 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 52.40 SS G_CDS: -0.62 Total: 51.78 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.88 -8.97 -40.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198566180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.038 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds