Wall clock time and date at job start Tue Mar 31 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 S 1.76208 * 119.99935 * 2 1 4 4 O 1.42102 * 106.39842 * 7.91964 * 3 2 1 5 5 O 1.42096 * 106.40297 * 234.99831 * 3 2 1 6 6 N 1.65603 * 107.21537 * 121.45531 * 3 2 1 7 7 C 1.46495 * 120.00270 * 276.46068 * 6 3 2 8 8 C 1.50710 * 109.47271 * 265.00440 * 7 6 3 9 9 H 1.08003 * 119.99610 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00157 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99941 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00007 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47350 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47354 * 119.99874 * 12 10 8 15 15 H 1.48505 * 109.47311 * 239.99979 * 12 10 8 16 16 C 1.46497 * 119.99696 * 96.46614 * 6 3 2 17 17 C 1.50707 * 109.47012 * 264.99410 * 16 6 3 18 18 C 1.38238 * 119.99792 * 90.00154 * 17 16 6 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.98090 * 17 16 6 23 23 H 1.08003 * 119.99952 * 180.02562 * 1 2 3 24 24 H 1.08005 * 120.00475 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00135 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47348 * 25.00296 * 7 6 3 27 27 H 1.08999 * 109.47483 * 145.00192 * 7 6 3 28 28 H 0.96997 * 119.99878 * 179.97438 * 11 10 8 29 29 H 1.09005 * 109.47643 * 144.99871 * 16 6 3 30 30 H 1.09000 * 109.47513 * 24.99035 * 16 6 3 31 31 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 32 32 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 33 33 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 34 34 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 35 35 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 16 2.1910 1.5260 0.0000 4 8 1.2222 2.5485 0.1878 5 8 3.0687 1.4826 -1.1166 6 7 3.1509 1.5378 1.3494 7 6 2.5951 1.9515 2.6401 8 6 2.8804 3.4143 2.8643 9 1 3.4220 3.9791 2.1198 10 6 2.4510 4.0312 4.0201 11 7 1.7920 3.3433 4.9268 12 14 2.8052 5.8440 4.2982 13 1 3.5564 6.3854 3.1372 14 1 1.5249 6.5814 4.4474 15 1 3.6166 6.0064 5.5314 16 6 4.5559 1.1345 1.2522 17 6 4.6862 -0.3231 1.6122 18 6 4.5810 -1.2898 0.6297 19 6 4.7011 -2.6268 0.9598 20 6 4.9268 -2.9971 2.2723 21 6 5.0266 -2.0307 3.2557 22 6 4.9112 -0.6935 2.9249 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5401 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.5176 1.7872 2.6413 27 1 3.0528 1.3658 3.4374 28 1 1.4903 3.7772 5.7401 29 1 5.1542 1.7332 1.9392 30 1 4.9089 1.2898 0.2328 31 1 4.4051 -1.0005 -0.3959 32 1 4.6185 -3.3820 0.1922 33 1 5.0210 -4.0416 2.5301 34 1 5.1986 -2.3202 4.2819 35 1 4.9941 0.0618 3.6924 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198566180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:12 Heat of formation + Delta-G solvation = -43.156768 kcal Electronic energy + Delta-G solvation = -20224.243067 eV Core-core repulsion = 17121.217033 eV Total energy + Delta-G solvation = -3103.026035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.20103 -38.22312 -37.28498 -36.84902 -34.66486 -34.41379 -32.29942 -31.72582 -29.14229 -26.66080 -24.43682 -23.37312 -23.25204 -22.09110 -19.64347 -18.77708 -18.49081 -17.78906 -17.46302 -17.23996 -16.41939 -16.06885 -15.89763 -15.39966 -15.19807 -14.63528 -14.24402 -14.01301 -13.88641 -13.67351 -13.48791 -13.23731 -13.07522 -13.01854 -12.90100 -12.50663 -12.42232 -12.27364 -12.01181 -11.78384 -11.66465 -11.59096 -11.50028 -10.57663 -9.85302 -9.75048 -9.63494 -8.18191 -6.28834 -0.50049 0.42686 0.50477 0.55846 1.39778 1.42496 1.53941 2.12344 2.43177 2.83956 2.96141 3.13224 3.48318 3.89040 3.94460 4.04045 4.20483 4.23021 4.35403 4.48582 4.63601 4.67578 4.84064 4.89497 4.92303 5.15568 5.17339 5.21895 5.23014 5.45779 5.61744 5.66842 5.69891 5.81106 5.90106 6.12713 6.17874 6.79284 7.39587 8.89548 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015225 B = 0.007291 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.641183 B = 3839.444270 C = 4915.384767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 C -0.747 4.747 3 S 2.669 3.331 4 O -0.992 6.992 5 O -0.991 6.991 6 N -0.982 5.982 7 C 0.274 3.726 8 C -0.543 4.543 9 H 0.054 0.946 10 C 0.014 3.986 11 N -0.923 5.923 12 Si 0.954 3.046 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.272 1.272 16 C 0.154 3.846 17 C -0.113 4.113 18 C -0.129 4.129 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.127 4.127 22 C -0.114 4.114 23 H 0.155 0.845 24 H 0.116 0.884 25 H 0.173 0.827 26 H 0.015 0.985 27 H 0.032 0.968 28 H 0.266 0.734 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.137 0.863 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 -13.749 -6.255 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.857 4.857 3 S 2.764 3.236 4 O -0.982 6.982 5 O -0.982 6.982 6 N -0.818 5.818 7 C 0.151 3.849 8 C -0.582 4.582 9 H 0.072 0.928 10 C -0.185 4.185 11 N -0.564 5.564 12 Si 0.780 3.220 13 H -0.195 1.195 14 H -0.206 1.206 15 H -0.197 1.197 16 C 0.029 3.971 17 C -0.115 4.115 18 C -0.148 4.148 19 C -0.140 4.140 20 C -0.138 4.138 21 C -0.145 4.145 22 C -0.133 4.133 23 H 0.172 0.828 24 H 0.134 0.866 25 H 0.191 0.809 26 H 0.033 0.967 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.155 0.845 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.129 -13.045 -6.701 14.995 hybrid contribution -0.181 0.532 0.767 0.951 sum 2.948 -12.513 -5.934 14.159 Atomic orbital electron populations 1.24614 0.94678 1.05786 0.79900 1.33347 1.09632 1.24462 1.18233 1.02141 0.73361 0.75556 0.72584 1.93548 1.62399 1.56401 1.85897 1.93474 1.65944 1.88334 1.50439 1.57255 1.19592 1.80521 1.24478 1.18623 0.92645 0.93891 0.79744 1.21846 1.36142 0.96419 1.03827 0.92822 1.25680 0.94788 1.02387 0.95668 1.70013 1.38896 1.37876 1.09571 0.85564 0.78071 0.80183 0.78221 1.19502 1.20602 1.19713 1.20294 0.81864 0.91438 1.03493 1.20381 1.00777 0.95805 0.94546 1.21344 1.00659 0.93606 0.99207 1.21437 0.99501 0.95613 0.97431 1.21494 0.99084 1.00418 0.92790 1.21424 0.99966 0.92410 1.00663 1.21239 0.99244 0.97177 0.95659 0.82754 0.86559 0.80902 0.96696 0.95006 0.92466 0.89404 0.88391 0.85456 0.83378 0.83315 0.84469 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.28 14.22 67.79 0.96 0.68 16 2 C -0.75 -22.56 10.32 67.79 0.70 -21.86 16 3 S 2.67 106.34 5.75 -56.49 -0.33 106.01 16 4 O -0.99 -47.20 16.12 -128.00 -2.06 -49.26 16 5 O -0.99 -40.30 16.47 -128.00 -2.11 -42.40 16 6 N -0.98 -40.99 2.75 -523.89 -1.44 -42.43 16 7 C 0.27 13.76 5.09 85.64 0.44 14.20 16 8 C -0.54 -30.42 9.38 25.60 0.24 -30.18 16 9 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 10 C 0.01 0.79 5.46 84.65 0.46 1.26 16 11 N -0.92 -53.49 13.29 21.45 0.28 -53.21 16 12 Si 0.95 44.49 29.54 68.60 2.03 46.52 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 C 0.15 5.52 5.78 85.64 0.49 6.02 16 17 C -0.11 -3.54 5.46 -19.86 -0.11 -3.65 16 18 C -0.13 -3.45 9.37 22.27 0.21 -3.24 16 19 C -0.12 -2.62 10.05 22.27 0.22 -2.40 16 20 C -0.12 -2.49 10.05 22.27 0.22 -2.26 16 21 C -0.13 -3.12 10.05 22.27 0.22 -2.90 16 22 C -0.11 -3.50 9.37 22.27 0.21 -3.29 16 23 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 24 H 0.12 3.14 7.21 -2.91 -0.02 3.12 16 25 H 0.17 4.46 7.72 -2.91 -0.02 4.44 16 26 H 0.02 0.81 7.79 -2.39 -0.02 0.79 16 27 H 0.03 1.62 7.61 -2.39 -0.02 1.61 16 28 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.09 3.21 8.05 -2.38 -0.02 3.20 16 30 H 0.10 3.28 6.82 -2.39 -0.02 3.27 16 31 H 0.13 3.24 8.06 -2.91 -0.02 3.21 16 32 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 35 H 0.11 3.70 7.90 -2.91 -0.02 3.67 16 Total: -1.00 -69.75 319.34 1.72 -68.03 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.07 Total: 14.37 kcal Atomic # 6 Polarization: -51.91 SS G_CDS: 4.28 Total: -47.63 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -1.16 Total: -95.64 kcal Atomic # 8 Polarization: -87.49 SS G_CDS: -4.17 Total: -91.66 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 106.34 SS G_CDS: -0.33 Total: 106.01 kcal Total: -69.75 1.72 -68.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198566180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.870 kcal (2) G-P(sol) polarization free energy of solvation -69.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds