Wall clock time and date at job start Tue Mar 31 2020 05:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32775 * 124.71199 * 2 1 4 4 C 1.44429 * 113.08175 * 180.02562 * 3 2 1 5 5 C 1.47190 * 123.45848 * 179.97438 * 4 3 2 6 6 O 1.21628 * 119.99728 * 185.86892 * 5 4 3 7 7 N 1.34773 * 120.00143 * 5.87058 * 5 4 3 8 8 C 1.47076 * 136.05631 * 4.94801 * 7 5 4 9 9 C 1.53761 * 87.88334 * 152.96605 * 8 7 5 10 10 O 1.42894 * 114.39607 * 272.67198 * 9 8 7 11 11 C 1.50704 * 114.26160 * 139.79179 * 9 8 7 12 12 H 1.07993 * 120.00001 * 266.46869 * 11 9 8 13 13 C 1.37879 * 119.99716 * 86.47424 * 11 9 8 14 14 N 1.31516 * 119.99816 * 179.97438 * 13 11 9 15 15 Si 1.86804 * 120.00200 * 0.02562 * 13 11 9 16 16 H 1.48496 * 109.47051 * 90.00050 * 15 13 11 17 17 H 1.48498 * 109.46867 * 209.99937 * 15 13 11 18 18 H 1.48502 * 109.46786 * 329.99694 * 15 13 11 19 19 C 1.47067 * 136.05771 * 185.32161 * 7 5 4 20 20 C 1.36007 * 113.07707 * 0.02562 * 4 3 2 21 21 C 1.50700 * 124.58830 * 180.02562 * 20 4 3 22 22 S 1.70446 * 110.82014 * 359.72848 * 20 4 3 23 23 H 1.09006 * 109.46864 * 89.99197 * 1 2 3 24 24 H 1.09000 * 109.47173 * 329.99796 * 1 2 3 25 25 H 1.08992 * 109.47278 * 209.99333 * 1 2 3 26 26 H 1.07997 * 123.45871 * 0.02562 * 3 2 1 27 27 H 1.09001 * 113.46372 * 267.70037 * 8 7 5 28 28 H 1.08994 * 113.46314 * 38.13977 * 8 7 5 29 29 H 0.96703 * 114.00440 * 273.59204 * 10 9 8 30 30 H 0.96997 * 119.99743 * 180.02562 * 14 13 11 31 31 H 1.08997 * 113.46835 * 321.86152 * 19 7 5 32 32 H 1.09001 * 113.46648 * 92.24557 * 19 7 5 33 33 H 1.09003 * 109.47288 * 90.00398 * 21 20 4 34 34 H 1.09000 * 109.47372 * 209.99804 * 21 20 4 35 35 H 1.09001 * 109.47555 * 330.00208 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8003 -0.0006 5 6 4.7201 1.8395 -0.0013 6 8 5.8905 1.5267 -0.1094 7 7 4.3777 3.1375 0.1180 8 6 3.1344 3.8876 0.3518 9 6 3.9905 4.9993 0.9807 10 8 4.2474 4.8286 2.3759 11 6 3.5524 6.3960 0.6222 12 1 4.0023 6.9041 -0.2178 13 6 2.5771 7.0249 1.3667 14 7 2.1951 8.2440 1.0542 15 14 1.7995 6.1462 2.8203 16 1 2.5780 6.4397 4.0503 17 1 0.4024 6.6183 2.9943 18 1 1.8000 4.6822 2.5715 19 6 5.0819 4.4276 0.0651 20 6 3.9476 -0.5327 -0.0016 21 6 5.3334 -1.1250 -0.0018 22 16 2.5064 -1.4427 0.0057 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 0.8900 0.5139 25 1 -0.3633 -0.8900 0.5137 26 1 1.8615 2.0940 0.0004 27 1 2.6326 4.1929 -0.5663 28 1 2.4618 3.4029 1.0594 29 1 3.5581 5.1898 2.9499 30 1 1.5093 8.6866 1.5783 31 1 6.0682 4.4031 0.5285 32 1 5.0942 4.8749 -0.9288 33 1 5.6673 -1.2687 1.0258 34 1 5.3179 -2.0858 -0.5164 35 1 6.0174 -0.4490 -0.5150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326849300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:28 Heat of formation + Delta-G solvation = -1.675486 kcal Electronic energy + Delta-G solvation = -20033.296842 eV Core-core repulsion = 16932.069571 eV Total energy + Delta-G solvation = -3101.227271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.07860 -38.27568 -36.72039 -34.63931 -32.95100 -32.58461 -29.95888 -28.63521 -26.10531 -25.56795 -24.67319 -23.02296 -20.60774 -19.49370 -18.42799 -17.47782 -17.02773 -16.48055 -15.79555 -15.40419 -15.04361 -14.20752 -14.09747 -13.74473 -13.56343 -13.34038 -13.12417 -12.99949 -12.96239 -12.75616 -12.34020 -12.17733 -11.94898 -11.53557 -11.52281 -11.17341 -10.96796 -10.89960 -10.59240 -10.13753 -9.70229 -9.24883 -9.06029 -8.70636 -8.55976 -8.42679 -7.98921 -6.46331 -4.52290 0.86181 1.48630 1.89479 2.11919 2.96258 2.99576 3.11493 3.46959 3.70349 3.98837 4.59549 4.65124 4.88083 4.98504 5.11217 5.20506 5.29751 5.41034 5.53408 5.61651 5.70071 5.72774 5.91707 6.01492 6.06480 6.15135 6.18755 6.31162 6.37961 6.39750 6.51251 6.56679 7.15278 7.97303 8.30083 8.47651 8.57750 8.63180 9.11179 10.65740 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021476 B = 0.005753 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.444615 B = 4865.471939 C = 5718.339862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.206 4.206 3 C -0.111 4.111 4 C -0.156 4.156 5 C 0.601 3.399 6 O -0.554 6.554 7 N -0.629 5.629 8 C 0.057 3.943 9 C 0.196 3.804 10 O -0.549 6.549 11 C -0.533 4.533 12 H 0.093 0.907 13 C 0.081 3.919 14 N -0.874 5.874 15 Si 0.858 3.142 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.258 1.258 19 C 0.123 3.877 20 C -0.146 4.146 21 C -0.094 4.094 22 S 0.156 5.844 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.155 0.845 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.351 0.649 30 H 0.271 0.729 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 -16.191 -1.644 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.322 4.322 3 C -0.140 4.140 4 C -0.172 4.172 5 C 0.391 3.609 6 O -0.436 6.436 7 N -0.362 5.362 8 C -0.066 4.066 9 C 0.155 3.845 10 O -0.360 6.360 11 C -0.571 4.571 12 H 0.111 0.889 13 C -0.125 4.125 14 N -0.510 5.510 15 Si 0.686 3.314 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.183 1.183 19 C 0.001 3.999 20 C -0.266 4.266 21 C -0.153 4.153 22 S 0.422 5.578 23 H 0.093 0.907 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.172 0.828 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.204 0.796 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.271 -18.211 -1.895 18.599 hybrid contribution -0.825 1.505 0.993 1.982 sum -4.096 -16.706 -0.903 17.225 Atomic orbital electron populations 1.20324 0.87561 1.03184 1.02782 1.24239 1.00219 0.95800 1.11952 1.21577 0.91279 1.00042 1.01058 1.20128 0.93556 0.92804 1.10686 1.16987 0.87241 0.80256 0.76431 1.90656 1.19136 1.80889 1.52900 1.49473 1.13903 1.03611 1.69170 1.24628 0.89273 0.91895 1.00817 1.20289 0.91890 0.92979 0.79356 1.86483 1.49489 1.82991 1.17028 1.21143 1.22018 0.96924 1.16994 0.88862 1.24996 0.95829 0.94668 0.96966 1.69848 1.29693 1.11980 1.39450 0.87342 0.79619 0.80607 0.83791 1.19220 1.20942 1.18300 1.23160 0.98134 0.78965 0.99645 1.24395 1.01531 0.96471 1.04233 1.20639 0.90631 1.00600 1.03396 1.82765 0.93859 1.09009 1.72147 0.90742 0.90380 0.91415 0.82769 0.88687 0.91456 0.79632 0.91823 0.90841 0.88650 0.90554 0.91849 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.35 36.01 0.37 -0.39 16 2 C -0.21 -2.66 6.44 -36.18 -0.23 -2.89 16 3 C -0.11 -1.72 9.32 -39.02 -0.36 -2.09 16 4 C -0.16 -2.72 5.98 -104.63 -0.63 -3.35 16 5 C 0.60 12.32 8.02 -12.63 -0.10 12.22 16 6 O -0.55 -12.28 14.83 5.25 0.08 -12.20 16 7 N -0.63 -12.96 3.68 -186.38 -0.69 -13.64 16 8 C 0.06 1.14 5.31 -8.35 -0.04 1.10 16 9 C 0.20 4.46 1.10 -91.12 -0.10 4.36 16 10 O -0.55 -13.07 13.33 -35.23 -0.47 -13.54 16 11 C -0.53 -13.53 9.28 -34.44 -0.32 -13.85 16 12 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 13 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 14 N -0.87 -24.06 13.96 55.43 0.77 -23.29 16 15 Si 0.86 18.72 24.42 -169.99 -4.15 14.56 16 16 H -0.27 -5.70 7.06 56.52 0.40 -5.30 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.26 -5.31 5.50 56.52 0.31 -4.99 16 19 C 0.12 2.58 8.03 -8.50 -0.07 2.51 16 20 C -0.15 -2.21 6.34 -35.11 -0.22 -2.43 16 21 C -0.09 -1.28 9.68 36.01 0.35 -0.93 16 22 S 0.16 1.87 22.94 -107.50 -2.47 -0.60 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.16 2.38 5.04 -52.49 -0.26 2.11 16 27 H 0.10 1.77 8.10 -51.93 -0.42 1.35 16 28 H 0.07 1.30 5.73 -51.93 -0.30 1.01 16 29 H 0.35 7.96 3.16 45.56 0.14 8.10 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.10 1.83 8.10 -51.93 -0.42 1.41 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.11 1.70 5.81 -51.93 -0.30 1.40 16 LS Contribution 299.30 15.07 4.51 4.51 Total: -1.00 -29.68 299.30 -7.61 -37.29 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -3.75 Total: 10.66 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -1.45 Total: -3.76 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.09 Total: -36.93 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.39 Total: -25.74 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -4.15 Total: 14.56 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.47 Total: -0.60 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.68 -7.61 -37.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326849300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.617 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds