Wall clock time and date at job start Tue Mar 31 2020 05:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32775 * 124.71199 * 2 1 4 4 C 1.44429 * 113.08175 * 180.02562 * 3 2 1 5 5 C 1.47190 * 123.45848 * 179.97438 * 4 3 2 6 6 O 1.21628 * 119.99728 * 185.86892 * 5 4 3 7 7 N 1.34773 * 120.00143 * 5.87058 * 5 4 3 8 8 C 1.47076 * 136.05631 * 4.94801 * 7 5 4 9 9 C 1.53761 * 87.88334 * 152.96605 * 8 7 5 10 10 O 1.42894 * 114.39607 * 272.67198 * 9 8 7 11 11 C 1.50704 * 114.26160 * 139.79179 * 9 8 7 12 12 H 1.07993 * 120.00001 * 266.46869 * 11 9 8 13 13 C 1.37879 * 119.99716 * 86.47424 * 11 9 8 14 14 N 1.31516 * 119.99816 * 179.97438 * 13 11 9 15 15 Si 1.86804 * 120.00200 * 0.02562 * 13 11 9 16 16 H 1.48496 * 109.47051 * 90.00050 * 15 13 11 17 17 H 1.48498 * 109.46867 * 209.99937 * 15 13 11 18 18 H 1.48502 * 109.46786 * 329.99694 * 15 13 11 19 19 C 1.47067 * 136.05771 * 185.32161 * 7 5 4 20 20 C 1.36007 * 113.07707 * 0.02562 * 4 3 2 21 21 C 1.50700 * 124.58830 * 180.02562 * 20 4 3 22 22 S 1.70446 * 110.82014 * 359.72848 * 20 4 3 23 23 H 1.09006 * 109.46864 * 89.99197 * 1 2 3 24 24 H 1.09000 * 109.47173 * 329.99796 * 1 2 3 25 25 H 1.08992 * 109.47278 * 209.99333 * 1 2 3 26 26 H 1.07997 * 123.45871 * 0.02562 * 3 2 1 27 27 H 1.09001 * 113.46372 * 267.70037 * 8 7 5 28 28 H 1.08994 * 113.46314 * 38.13977 * 8 7 5 29 29 H 0.96703 * 114.00440 * 273.59204 * 10 9 8 30 30 H 0.96997 * 119.99743 * 180.02562 * 14 13 11 31 31 H 1.08997 * 113.46835 * 321.86152 * 19 7 5 32 32 H 1.09001 * 113.46648 * 92.24557 * 19 7 5 33 33 H 1.09003 * 109.47288 * 90.00398 * 21 20 4 34 34 H 1.09000 * 109.47372 * 209.99804 * 21 20 4 35 35 H 1.09001 * 109.47555 * 330.00208 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8003 -0.0006 5 6 4.7201 1.8395 -0.0013 6 8 5.8905 1.5267 -0.1094 7 7 4.3777 3.1375 0.1180 8 6 3.1344 3.8876 0.3518 9 6 3.9905 4.9993 0.9807 10 8 4.2474 4.8286 2.3759 11 6 3.5524 6.3960 0.6222 12 1 4.0023 6.9041 -0.2178 13 6 2.5771 7.0249 1.3667 14 7 2.1951 8.2440 1.0542 15 14 1.7995 6.1462 2.8203 16 1 2.5780 6.4397 4.0503 17 1 0.4024 6.6183 2.9943 18 1 1.8000 4.6822 2.5715 19 6 5.0819 4.4276 0.0651 20 6 3.9476 -0.5327 -0.0016 21 6 5.3334 -1.1250 -0.0018 22 16 2.5064 -1.4427 0.0057 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 0.8900 0.5139 25 1 -0.3633 -0.8900 0.5137 26 1 1.8615 2.0940 0.0004 27 1 2.6326 4.1929 -0.5663 28 1 2.4618 3.4029 1.0594 29 1 3.5581 5.1898 2.9499 30 1 1.5093 8.6866 1.5783 31 1 6.0682 4.4031 0.5285 32 1 5.0942 4.8749 -0.9288 33 1 5.6673 -1.2687 1.0258 34 1 5.3179 -2.0858 -0.5164 35 1 6.0174 -0.4490 -0.5150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326849300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:28 Heat of formation + Delta-G solvation = -22.578145 kcal Electronic energy + Delta-G solvation = -20034.203249 eV Core-core repulsion = 16932.069571 eV Total energy + Delta-G solvation = -3102.133679 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.67030 -39.77831 -38.02841 -36.42836 -34.57220 -33.97345 -31.35223 -29.94757 -27.77814 -27.17799 -25.91394 -24.30674 -22.16548 -20.83097 -19.99268 -19.29716 -18.29539 -18.20494 -17.15078 -16.87893 -16.60691 -15.73302 -15.53473 -15.19495 -14.89097 -14.72867 -14.54200 -14.24719 -14.19978 -13.98853 -13.92249 -13.75882 -12.97828 -12.86385 -12.68546 -12.60379 -12.50481 -12.42097 -11.97621 -11.89125 -11.41845 -11.09007 -10.79532 -10.46600 -9.81730 -9.57899 -9.33251 -8.44689 -6.56531 -0.27654 0.47254 0.82973 0.90986 1.23426 1.26089 1.37891 1.91954 2.14771 2.25477 2.73372 3.17882 3.53610 3.67226 3.78321 3.99115 4.20001 4.32047 4.38551 4.45693 4.57633 4.59981 4.61963 4.66418 4.72179 4.76229 4.86345 4.98277 5.05910 5.15565 5.21856 5.27956 5.35884 6.00689 6.51285 6.62913 6.73258 7.05902 7.11921 8.70558 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021476 B = 0.005753 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.444615 B = 4865.471939 C = 5718.339862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.201 4.201 3 C -0.137 4.137 4 C -0.190 4.190 5 C 0.594 3.406 6 O -0.582 6.582 7 N -0.633 5.633 8 C 0.075 3.925 9 C 0.185 3.815 10 O -0.558 6.558 11 C -0.539 4.539 12 H 0.062 0.938 13 C 0.032 3.968 14 N -0.919 5.919 15 Si 0.915 3.085 16 H -0.258 1.258 17 H -0.277 1.277 18 H -0.236 1.236 19 C 0.121 3.879 20 C -0.161 4.161 21 C -0.094 4.094 22 S 0.240 5.760 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.150 0.850 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.355 0.645 30 H 0.275 0.725 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.019 -19.301 -1.005 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.318 4.318 3 C -0.165 4.165 4 C -0.207 4.207 5 C 0.385 3.615 6 O -0.466 6.466 7 N -0.366 5.366 8 C -0.048 4.048 9 C 0.144 3.856 10 O -0.371 6.371 11 C -0.577 4.577 12 H 0.080 0.920 13 C -0.169 4.169 14 N -0.556 5.556 15 Si 0.740 3.260 16 H -0.184 1.184 17 H -0.203 1.203 18 H -0.161 1.161 19 C -0.002 4.002 20 C -0.282 4.282 21 C -0.152 4.152 22 S 0.507 5.493 23 H 0.108 0.892 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.167 0.833 27 H 0.125 0.875 28 H 0.097 0.903 29 H 0.208 0.792 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.281 -21.338 -1.263 22.019 hybrid contribution -0.154 2.401 0.725 2.513 sum -5.435 -18.938 -0.539 19.709 Atomic orbital electron populations 1.20492 0.85047 1.04411 1.04155 1.24742 1.02016 0.95753 1.09313 1.21485 0.90577 1.00799 1.03624 1.20044 0.93722 0.92795 1.14150 1.17591 0.87801 0.80510 0.75562 1.90634 1.20512 1.81260 1.54174 1.49479 1.13750 1.03677 1.69646 1.24408 0.88886 0.90316 1.01219 1.20324 0.93664 0.92424 0.79214 1.86478 1.50124 1.82971 1.17485 1.21217 1.21918 0.98346 1.16235 0.91998 1.25749 0.96233 0.95214 0.99734 1.69976 1.30758 1.13752 1.41149 0.86383 0.78795 0.80620 0.80227 1.18422 1.20320 1.16066 1.23151 0.97396 0.79765 0.99867 1.24781 1.03815 0.96553 1.03026 1.20632 0.89584 1.01327 1.03678 1.82473 0.90662 1.06639 1.69576 0.89189 0.90066 0.89328 0.83296 0.87511 0.90275 0.79184 0.91564 0.91685 0.87529 0.90150 0.88709 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.35 71.24 0.74 -0.50 16 2 C -0.20 -4.51 6.44 24.51 0.16 -4.35 16 3 C -0.14 -3.99 9.32 22.67 0.21 -3.77 16 4 C -0.19 -6.47 5.98 -19.87 -0.12 -6.59 16 5 C 0.59 24.46 8.02 86.60 0.69 25.16 16 6 O -0.58 -26.37 14.83 -4.12 -0.06 -26.43 16 7 N -0.63 -26.12 3.68 -862.31 -3.17 -29.30 16 8 C 0.07 2.93 5.31 83.27 0.44 3.37 16 9 C 0.18 8.41 1.10 -11.12 -0.01 8.39 16 10 O -0.56 -26.24 13.33 -148.98 -1.99 -28.22 16 11 C -0.54 -27.99 9.28 25.60 0.24 -27.75 16 12 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 13 C 0.03 1.69 5.47 84.65 0.46 2.15 16 14 N -0.92 -51.62 13.96 21.45 0.30 -51.32 16 15 Si 0.91 37.88 24.42 68.60 1.68 39.55 16 16 H -0.26 -10.37 7.06 99.48 0.70 -9.67 16 17 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.24 -8.92 5.50 99.48 0.55 -8.37 16 19 C 0.12 5.16 8.03 83.19 0.67 5.82 16 20 C -0.16 -4.54 6.34 25.17 0.16 -4.38 16 21 C -0.09 -2.42 9.68 71.24 0.69 -1.73 16 22 S 0.24 4.79 22.94 -56.49 -1.30 3.50 16 23 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.15 4.34 5.04 -2.91 -0.01 4.33 16 27 H 0.11 3.90 8.10 -2.39 -0.02 3.88 16 28 H 0.08 2.92 5.73 -2.39 -0.01 2.90 16 29 H 0.36 15.54 3.16 -74.06 -0.23 15.31 16 30 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.11 4.22 8.10 -2.39 -0.02 4.21 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 2.53 5.81 -2.39 -0.01 2.52 16 Total: -1.00 -65.48 299.30 0.52 -64.96 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.73 Total: 31.45 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 4.33 Total: -4.19 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -2.87 Total: -80.62 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -2.05 Total: -54.65 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 1.68 Total: 39.55 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.30 Total: 3.50 kcal Total: -65.48 0.52 -64.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326849300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.384 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds