Wall clock time and date at job start Tue Mar 31 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81003 * 109.47109 * 2 1 4 4 C 1.76195 * 100.00306 * 180.02562 * 3 2 1 5 5 C 1.39694 * 120.57604 * 0.29271 * 4 3 2 6 6 C 1.38132 * 118.42308 * 180.25919 * 5 4 3 7 7 C 1.38902 * 119.49760 * 359.73746 * 6 5 4 8 8 N 1.31305 * 121.15010 * 359.96865 * 7 6 5 9 9 C 1.32945 * 121.71210 * 0.03216 * 8 7 6 10 10 C 1.47547 * 119.81520 * 179.97438 * 9 8 7 11 11 O 1.21498 * 120.00069 * 179.97438 * 10 9 8 12 12 O 1.34761 * 119.99836 * 359.97438 * 10 9 8 13 13 C 1.45194 * 116.99749 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47239 * 330.00132 * 13 12 10 15 15 C 1.52997 * 109.47339 * 90.00374 * 13 12 10 16 16 C 1.50708 * 109.47032 * 210.00475 * 13 12 10 17 17 H 1.08000 * 119.99723 * 359.97438 * 16 13 12 18 18 C 1.37873 * 119.99930 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00195 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99968 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46809 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46948 * 120.00245 * 20 18 16 23 23 H 1.48497 * 109.47378 * 240.00531 * 20 18 16 24 24 H 1.09001 * 109.47742 * 59.99889 * 1 2 3 25 25 H 1.09002 * 109.47083 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47430 * 299.99422 * 1 2 3 27 27 H 1.09004 * 109.46919 * 240.00698 * 2 1 3 28 28 H 1.08995 * 109.47372 * 120.00249 * 2 1 3 29 29 H 1.08005 * 120.79139 * 359.97384 * 5 4 3 30 30 H 1.07995 * 120.25154 * 179.70933 * 6 5 4 31 31 H 1.07997 * 119.42983 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47153 * 59.99705 * 15 13 12 33 33 H 1.09001 * 109.46832 * 299.99896 * 15 13 12 34 34 H 1.09004 * 109.47261 * 179.97438 * 15 13 12 35 35 H 0.97006 * 120.00358 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7065 0.0000 4 6 3.8712 1.4167 -0.0008 5 6 4.3743 0.1135 -0.0073 6 6 5.7444 -0.0624 -0.0022 7 6 6.5767 1.0496 0.0037 8 7 6.0841 2.2667 0.0039 9 6 4.7735 2.4902 -0.0009 10 6 4.2655 3.8754 0.0000 11 8 3.0685 4.0835 -0.0048 12 8 5.1293 4.9098 0.0063 13 6 4.5587 6.2450 0.0074 14 1 3.5996 6.2307 -0.5104 15 6 4.3524 6.7102 1.4503 16 6 5.4957 7.1923 -0.6968 17 1 6.4270 6.8274 -1.1040 18 6 5.1639 8.5247 -0.8211 19 7 4.0300 8.9691 -0.3248 20 14 6.3256 9.6991 -1.6934 21 1 7.5248 8.9559 -2.1567 22 1 5.6351 10.3015 -2.8619 23 1 6.7401 10.7731 -0.7554 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.7079 -0.7364 -0.0116 30 1 6.1652 -1.0570 -0.0023 31 1 7.6477 0.9108 0.0073 32 1 5.3114 6.7245 1.9681 33 1 3.6747 6.0251 1.9595 34 1 3.9244 7.7128 1.4511 35 1 3.7967 9.9067 -0.4119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341930106.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:21 Heat of formation + Delta-G solvation = -50.066490 kcal Electronic energy + Delta-G solvation = -19341.153018 eV Core-core repulsion = 16237.827355 eV Total energy + Delta-G solvation = -3103.325663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36776 -38.94183 -35.75707 -33.49205 -33.19678 -32.38298 -31.53283 -29.47232 -25.47111 -25.21213 -23.78441 -23.65094 -21.61386 -19.94338 -17.93401 -17.39156 -16.77255 -16.27074 -15.78807 -15.35720 -15.34674 -14.92675 -14.73345 -14.40879 -13.71511 -13.67271 -13.11213 -12.72667 -12.36776 -12.14313 -11.87649 -11.75915 -11.72760 -11.19051 -11.03703 -10.86365 -10.67942 -10.49576 -10.29744 -10.20334 -9.66395 -9.63313 -9.50777 -9.21153 -8.84321 -8.44588 -7.45667 -6.13285 -4.19236 0.53398 1.01653 1.50196 2.34039 2.89972 3.28064 3.32896 3.37273 3.47476 3.87923 4.33356 4.42952 4.58310 4.67627 4.69922 4.80275 4.97153 5.17043 5.20025 5.21870 5.43218 5.48313 5.56642 5.81394 5.86297 5.87775 6.38343 6.67348 6.94293 6.95158 7.14827 7.60805 7.74596 7.78411 7.96363 8.18274 8.62219 8.92743 9.45628 10.94392 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022782 B = 0.004562 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.735097 B = 6136.361297 C = 7033.707731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.178 4.178 3 S 0.032 5.968 4 C -0.103 4.103 5 C -0.106 4.106 6 C -0.129 4.129 7 C 0.083 3.917 8 N -0.409 5.409 9 C 0.109 3.891 10 C 0.504 3.496 11 O -0.487 6.487 12 O -0.326 6.326 13 C 0.212 3.788 14 H 0.048 0.952 15 C -0.154 4.154 16 C -0.517 4.517 17 H 0.071 0.929 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.911 3.089 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.281 1.281 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.165 0.835 32 H 0.037 0.963 33 H 0.016 0.984 34 H 0.100 0.900 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 -20.510 1.324 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.326 4.326 3 S 0.279 5.721 4 C -0.220 4.220 5 C -0.138 4.138 6 C -0.151 4.151 7 C -0.082 4.082 8 N -0.120 5.120 9 C -0.034 4.034 10 C 0.346 3.654 11 O -0.378 6.378 12 O -0.240 6.240 13 C 0.159 3.841 14 H 0.066 0.934 15 C -0.212 4.212 16 C -0.555 4.555 17 H 0.089 0.911 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.739 3.261 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.207 1.207 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.183 0.817 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.119 0.881 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.498 -18.419 1.345 18.636 hybrid contribution 0.795 -1.295 -0.380 1.566 sum -1.703 -19.714 0.965 19.811 Atomic orbital electron populations 1.21430 0.91971 1.02457 1.03371 1.24117 1.01349 1.02198 1.04944 1.87488 0.92756 1.03477 1.88405 1.23182 1.00671 0.96147 1.02012 1.21548 0.96445 0.94958 1.00822 1.22286 0.93666 1.00944 0.98180 1.22938 1.00923 0.86919 0.97422 1.67798 1.12661 1.24633 1.06911 1.20107 0.88859 0.91298 1.03169 1.20472 0.84908 0.85844 0.74181 1.90714 1.16267 1.84279 1.46490 1.86688 1.39464 1.17349 1.80526 1.20758 0.95828 0.72561 0.94911 0.93380 1.22163 0.99250 1.03333 0.96461 1.21072 1.05730 0.92292 1.36417 0.91116 1.24874 0.95701 0.97779 0.95612 1.69909 1.22191 1.15663 1.45053 0.86218 0.80583 0.80251 0.79097 1.19426 1.20788 1.20731 0.91564 0.91364 0.91583 0.89770 0.89793 0.83915 0.83999 0.81748 0.94347 0.96468 0.88145 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 9.92 37.16 0.37 -0.75 16 2 C -0.18 -1.71 4.90 37.16 0.18 -1.52 16 3 S 0.03 0.49 18.97 -107.50 -2.04 -1.55 16 4 C -0.10 -1.60 6.17 -38.29 -0.24 -1.84 16 5 C -0.11 -1.18 9.27 -39.08 -0.36 -1.55 16 6 C -0.13 -1.26 10.10 -39.37 -0.40 -1.66 16 7 C 0.08 1.03 11.17 -17.53 -0.20 0.83 16 8 N -0.41 -7.25 10.11 -9.67 -0.10 -7.35 16 9 C 0.11 2.08 6.76 -82.84 -0.56 1.52 16 10 C 0.50 11.67 7.90 34.53 0.27 11.95 16 11 O -0.49 -11.73 13.00 -19.26 -0.25 -11.98 16 12 O -0.33 -8.46 9.68 -40.66 -0.39 -8.86 16 13 C 0.21 5.92 2.56 -27.88 -0.07 5.85 16 14 H 0.05 1.46 7.16 -51.93 -0.37 1.08 16 15 C -0.15 -4.06 9.33 37.16 0.35 -3.71 16 16 C -0.52 -15.04 8.90 -34.44 -0.31 -15.35 16 17 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -25.73 11.32 55.43 0.63 -25.11 16 20 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.70 7.56 -51.91 -0.39 0.31 16 28 H 0.08 0.70 7.58 -51.92 -0.39 0.30 16 29 H 0.14 1.15 5.67 -52.48 -0.30 0.85 16 30 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 2.78 6.07 -51.93 -0.32 2.47 16 35 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 313.21 15.07 4.72 4.72 Total: -1.00 -32.80 313.21 -7.78 -40.59 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -4.27 Total: -2.46 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.05 Total: -4.58 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.53 Total: -32.46 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.64 Total: -20.84 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -2.04 Total: -1.55 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.80 -7.78 -40.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341930106.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.480 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds