Wall clock time and date at job start Tue Mar 31 2020 05:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 115.54839 * 2 1 4 4 S 1.65604 * 119.99920 * 54.27035 * 3 2 1 5 5 O 1.42098 * 106.40105 * 178.45786 * 4 3 2 6 6 O 1.42105 * 106.40339 * 45.53423 * 4 3 2 7 7 C 1.76202 * 107.21606 * 291.99673 * 4 3 2 8 8 C 1.37642 * 120.12940 * 115.51290 * 7 4 3 9 9 C 1.38607 * 120.24902 * 180.02562 * 8 7 4 10 10 C 1.38654 * 120.50386 * 359.69787 * 9 8 7 11 11 C 1.37597 * 120.24826 * 0.55947 * 10 9 8 12 12 C 1.40700 * 120.12921 * 295.49093 * 7 4 3 13 13 C 1.41392 * 120.24313 * 359.97438 * 12 7 4 14 14 H 1.08005 * 120.00232 * 31.31837 * 13 12 7 15 15 C 1.39939 * 120.00352 * 211.32079 * 13 12 7 16 16 N 1.30827 * 119.99860 * 15.92224 * 15 13 12 17 17 Si 1.86806 * 120.00376 * 195.92558 * 15 13 12 18 18 H 1.48502 * 109.47197 * 89.99588 * 17 15 13 19 19 H 1.48496 * 109.47029 * 209.99683 * 17 15 13 20 20 H 1.48496 * 109.46857 * 329.99487 * 17 15 13 21 21 C 1.52994 * 117.49820 * 145.67229 * 2 1 3 22 22 C 1.52994 * 117.49782 * 214.33299 * 2 1 3 23 23 H 1.09004 * 109.47495 * 47.82132 * 1 2 3 24 24 H 1.09000 * 109.47332 * 167.81353 * 1 2 3 25 25 H 1.08998 * 109.47539 * 287.81828 * 1 2 3 26 26 H 0.96993 * 119.99882 * 234.26674 * 3 2 1 27 27 H 1.08007 * 119.87017 * 359.97438 * 8 7 4 28 28 H 1.08008 * 119.74690 * 179.97438 * 9 8 7 29 29 H 1.08002 * 119.87751 * 180.27714 * 10 9 8 30 30 H 1.07994 * 120.13367 * 179.74866 * 11 10 9 31 31 H 0.97002 * 120.00371 * 180.02562 * 16 15 13 32 32 H 1.09000 * 117.49594 * 214.99847 * 21 2 1 33 33 H 1.08998 * 117.49979 * 0.02562 * 21 2 1 34 34 H 1.09007 * 117.49948 * 359.97438 * 22 2 1 35 35 H 1.09009 * 117.49799 * 144.97138 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1618 1.3218 0.0000 4 16 1.7633 2.4300 1.1642 5 8 2.5615 3.5788 0.9147 6 8 1.7711 1.7321 2.4021 7 6 0.0933 2.9122 0.8754 8 6 -0.8798 2.6232 1.8050 9 6 -2.1944 3.0008 1.5801 10 6 -2.5437 3.6783 0.4218 11 6 -1.5884 3.9730 -0.5236 12 6 -0.2505 3.5945 -0.3060 13 6 0.7408 3.8977 -1.2675 14 1 1.5878 3.2399 -1.3958 15 6 0.6246 5.0499 -2.0531 16 7 -0.2063 5.9983 -1.7042 17 14 1.6557 5.2340 -3.5998 18 1 0.9161 4.6705 -4.7578 19 1 1.9326 6.6727 -3.8419 20 1 2.9382 4.5050 -3.4293 21 6 2.2364 -1.1207 0.7653 22 6 2.2364 -1.1207 -0.7654 23 1 -0.3634 0.6900 -0.7616 24 1 -0.3634 -1.0045 -0.2169 25 1 -0.3634 0.3144 0.9783 26 1 2.8136 1.5477 -0.6819 27 1 -0.6182 2.0994 2.7126 28 1 -2.9516 2.7695 2.3147 29 1 -3.5703 3.9717 0.2590 30 1 -1.8633 4.4972 -1.4270 31 1 -0.2872 6.7969 -2.2488 32 1 3.1713 -0.8746 1.2688 33 1 1.6112 -1.8583 1.2684 34 1 1.6111 -1.8582 -1.2686 35 1 3.1711 -0.8744 -1.2693 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348563929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:22 Heat of formation + Delta-G solvation = -56.408851 kcal Electronic energy + Delta-G solvation = -20840.998078 eV Core-core repulsion = 17737.397390 eV Total energy + Delta-G solvation = -3103.600688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.48390 -39.12531 -37.93854 -36.64974 -35.64178 -33.01699 -31.99248 -31.42938 -29.23545 -27.29976 -23.42585 -23.30745 -22.94118 -21.60877 -19.97783 -19.47247 -18.33124 -17.90752 -17.29461 -17.03713 -16.08829 -16.03803 -15.48585 -15.09945 -14.90375 -14.45708 -14.18414 -13.86882 -13.63685 -13.32813 -13.15070 -12.97175 -12.91131 -12.87538 -12.79669 -12.76136 -12.46276 -12.29584 -12.14270 -11.90772 -11.61474 -11.16438 -11.13012 -10.84964 -9.98084 -9.75992 -9.39333 -8.80650 -6.58391 -0.14688 0.56028 0.98604 1.36170 1.49013 1.50831 2.16165 2.30869 2.63664 2.81318 3.08126 3.46912 3.78147 3.83162 4.04343 4.13035 4.27010 4.36250 4.51007 4.73478 4.83263 4.87550 4.94666 4.98735 5.09421 5.13408 5.28045 5.31477 5.32501 5.45270 5.53970 5.72887 5.81595 6.01354 6.10890 6.24163 6.48269 6.70298 6.84579 8.18886 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.009071 C = 0.007290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.470487 B = 3085.862471 C = 3840.010980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.078 3.922 3 N -1.080 6.080 4 S 2.716 3.284 5 O -1.005 7.005 6 O -1.004 7.004 7 C -0.777 4.777 8 C -0.011 4.011 9 C -0.246 4.246 10 C -0.072 4.072 11 C -0.184 4.184 12 C 0.172 3.828 13 C -0.485 4.485 14 H 0.091 0.909 15 C 0.041 3.959 16 N -0.810 5.810 17 Si 0.973 3.027 18 H -0.250 1.250 19 H -0.269 1.269 20 H -0.254 1.254 21 C -0.181 4.181 22 C -0.143 4.143 23 H 0.056 0.944 24 H 0.099 0.901 25 H 0.053 0.947 26 H 0.418 0.582 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.294 0.706 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 -10.617 -2.568 10.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.011 4.011 3 N -0.838 5.838 4 S 2.813 3.187 5 O -0.995 6.995 6 O -0.994 6.994 7 C -0.872 4.872 8 C -0.031 4.031 9 C -0.266 4.266 10 C -0.091 4.091 11 C -0.204 4.204 12 C 0.168 3.832 13 C -0.513 4.513 14 H 0.109 0.891 15 C -0.177 4.177 16 N -0.434 5.434 17 Si 0.793 3.207 18 H -0.174 1.174 19 H -0.193 1.193 20 H -0.177 1.177 21 C -0.220 4.220 22 C -0.182 4.182 23 H 0.075 0.925 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.254 0.746 27 H 0.138 0.862 28 H 0.145 0.855 29 H 0.140 0.860 30 H 0.122 0.878 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.370 -10.110 -1.806 10.361 hybrid contribution -0.121 0.908 -1.056 1.398 sum 1.250 -9.203 -2.861 9.718 Atomic orbital electron populations 1.21735 0.91090 1.03964 1.02427 1.20571 0.92156 0.79089 1.09310 1.54855 1.55783 1.24982 1.48146 1.00435 0.74247 0.71723 0.72267 1.93489 1.69966 1.50289 1.85766 1.93419 1.88162 1.74596 1.43252 1.30085 1.21801 1.29272 1.06018 1.20507 0.93041 0.93881 0.95636 1.20860 0.96060 1.09358 1.00337 1.21207 0.98647 0.95475 0.93778 1.21382 0.93241 1.05454 1.00359 1.17209 0.92983 0.84890 0.88148 1.20071 1.06972 1.07484 1.16804 0.89087 1.26761 0.96050 0.93917 1.00954 1.69838 1.31387 1.05802 1.36353 0.85319 0.79419 0.78911 0.77060 1.17405 1.19347 1.17706 1.23546 1.02817 1.00487 0.95164 1.23449 1.02456 0.98157 0.94106 0.92523 0.88228 0.92758 0.74577 0.86232 0.85491 0.86028 0.87844 0.89488 0.89102 0.86524 0.85558 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 8.41 71.98 0.61 -3.46 16 2 C 0.08 2.32 2.64 3.60 0.01 2.33 16 3 N -1.08 -38.41 5.11 -152.23 -0.78 -39.19 16 4 S 2.72 121.82 4.85 -56.49 -0.27 121.54 16 5 O -1.00 -52.28 16.66 -128.00 -2.13 -54.41 16 6 O -1.00 -46.01 16.67 -128.00 -2.13 -48.15 16 7 C -0.78 -36.91 4.15 22.73 0.09 -36.82 16 8 C -0.01 -0.48 8.12 22.22 0.18 -0.30 16 9 C -0.25 -10.11 10.05 22.46 0.23 -9.88 16 10 C -0.07 -3.11 10.02 22.22 0.22 -2.89 16 11 C -0.18 -9.08 8.66 22.73 0.20 -8.88 16 12 C 0.17 8.76 5.49 -21.29 -0.12 8.65 16 13 C -0.48 -24.64 7.54 23.46 0.18 -24.46 16 14 H 0.09 4.33 5.81 -2.91 -0.02 4.32 16 15 C 0.04 2.01 5.13 85.25 0.44 2.45 16 16 N -0.81 -41.04 11.32 21.83 0.25 -40.79 16 17 Si 0.97 36.75 29.59 68.60 2.03 38.78 16 18 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 19 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 20 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 21 C -0.18 -4.47 10.18 30.62 0.31 -4.16 16 22 C -0.14 -3.00 10.11 30.62 0.31 -2.69 16 23 H 0.06 1.96 7.97 -2.38 -0.02 1.94 16 24 H 0.10 2.25 8.04 -2.39 -0.02 2.24 16 25 H 0.05 1.81 6.28 -2.39 -0.02 1.80 16 26 H 0.42 13.42 8.56 -96.75 -0.83 12.59 16 27 H 0.12 4.86 7.33 -2.91 -0.02 4.84 16 28 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 29 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 30 H 0.10 5.23 6.62 -2.91 -0.02 5.21 16 31 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.12 2.44 8.14 -2.39 -0.02 2.43 16 34 H 0.13 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -65.04 303.60 -0.10 -65.14 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: 0.29 Total: 37.19 kcal Atomic # 6 Polarization: -82.77 SS G_CDS: 2.65 Total: -80.12 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -0.53 Total: -79.98 kcal Atomic # 8 Polarization: -98.29 SS G_CDS: -4.27 Total: -102.56 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Atomic # 16 Polarization: 121.82 SS G_CDS: -0.27 Total: 121.54 kcal Total: -65.04 -0.10 -65.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348563929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.736 kcal (2) G-P(sol) polarization free energy of solvation -65.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds