Wall clock time and date at job start Tue Mar 31 2020 05:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00255 * 2 1 4 4 H 1.48497 * 109.47476 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46947 * 300.00025 * 3 2 1 6 6 H 1.48507 * 109.47217 * 59.99659 * 3 2 1 7 7 C 1.37877 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00568 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46904 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46832 * 179.97438 * 10 9 7 12 12 S 1.81394 * 109.46960 * 179.97438 * 11 10 9 13 13 C 1.81408 * 102.99810 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46846 * 180.02562 * 13 12 11 15 15 C 1.38356 * 120.34665 * 269.72211 * 14 13 12 16 16 N 1.31934 * 121.09120 * 179.70061 * 15 14 13 17 17 C 1.31679 * 121.88254 * 0.59295 * 16 15 14 18 18 C 1.39571 * 120.56309 * 359.70139 * 17 16 15 19 19 C 1.47721 * 120.56869 * 179.97438 * 18 17 16 20 20 O 1.21468 * 120.00466 * 180.02562 * 19 18 17 21 21 O 1.34709 * 119.99429 * 0.02562 * 19 18 17 22 22 C 1.38342 * 120.34233 * 90.00116 * 14 13 12 23 23 H 0.97001 * 119.99436 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46877 * 59.99502 * 9 7 2 25 25 H 1.08997 * 109.46864 * 299.99798 * 9 7 2 26 26 H 1.09002 * 109.46921 * 60.00376 * 10 9 7 27 27 H 1.08997 * 109.47379 * 299.99708 * 10 9 7 28 28 H 1.09005 * 109.46565 * 60.00151 * 11 10 9 29 29 H 1.08997 * 109.47094 * 300.00120 * 11 10 9 30 30 H 1.09000 * 109.46602 * 60.00357 * 13 12 11 31 31 H 1.09000 * 109.47286 * 300.00088 * 13 12 11 32 32 H 1.08010 * 119.45378 * 359.97438 * 15 14 13 33 33 H 1.08001 * 119.71741 * 179.72373 * 17 16 15 34 34 H 0.96708 * 116.99421 * 179.97438 * 21 19 18 35 35 H 1.07996 * 120.85963 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 16 2.6591 -6.3658 0.0004 13 6 1.5808 -7.8246 0.0005 14 6 2.4248 -9.0731 0.0005 15 6 2.8115 -9.6555 -1.1934 16 7 3.5551 -10.7452 -1.2106 17 6 3.9528 -11.3334 -0.1016 18 6 3.6002 -10.8119 1.1441 19 6 4.0457 -11.4719 2.3883 20 8 3.7326 -11.0095 3.4669 21 8 4.7994 -12.5868 2.3265 22 6 2.8162 -9.6521 1.1945 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 0.8534 -5.0450 -0.8887 29 1 0.8540 -5.0446 0.8914 30 1 0.9513 -7.8111 -0.8893 31 1 0.9519 -7.8116 0.8907 32 1 2.5031 -9.2082 -2.1269 33 1 4.5571 -12.2268 -0.1564 34 1 5.0671 -12.9828 3.1672 35 1 2.5252 -9.2208 2.1409 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065299.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:59 Heat of formation + Delta-G solvation = -79.055655 kcal Electronic energy + Delta-G solvation = -17865.303417 eV Core-core repulsion = 14760.720690 eV Total energy + Delta-G solvation = -3104.582727 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.15444 -39.85972 -36.55767 -34.50671 -34.13488 -32.71039 -32.06075 -28.07656 -27.36775 -25.71950 -23.62424 -23.08143 -21.68736 -20.28434 -18.62526 -17.83799 -17.02381 -16.71024 -16.48241 -16.15478 -15.83979 -14.80730 -14.70121 -14.54303 -14.20794 -13.75006 -13.56183 -13.42471 -13.30612 -12.64305 -12.47368 -12.04719 -11.80163 -11.75942 -11.25767 -10.98899 -10.91867 -10.59547 -10.34170 -10.03412 -9.96189 -9.83988 -9.43246 -9.27738 -9.09933 -8.39945 -7.57279 -6.04750 -4.07237 0.04283 0.59733 1.80747 2.15607 2.47528 2.72732 3.29351 3.36952 3.39400 3.41712 3.92299 4.14066 4.34173 4.43268 4.43504 4.49984 4.69755 5.08292 5.16077 5.31425 5.31926 5.43787 5.55152 5.56274 5.69840 5.98485 6.05418 6.07039 6.49922 6.66287 6.97065 7.34557 7.44916 7.59842 7.71285 7.94126 8.35771 8.99414 9.57310 11.06614 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034955 B = 0.002490 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.831576 B =11243.945618 C =11589.617659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.095 4.095 11 C -0.074 4.074 12 S -0.266 6.266 13 C -0.050 4.050 14 C -0.126 4.126 15 C 0.153 3.847 16 N -0.488 5.488 17 C 0.159 3.841 18 C -0.183 4.183 19 C 0.534 3.466 20 O -0.507 6.507 21 O -0.511 6.511 22 C 0.006 3.994 23 H 0.260 0.740 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.168 0.832 33 H 0.172 0.828 34 H 0.418 0.582 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.178 -25.709 0.992 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.134 4.134 11 C -0.221 4.221 12 S -0.036 6.036 13 C -0.198 4.198 14 C -0.129 4.129 15 C -0.005 4.005 16 N -0.195 5.195 17 C 0.000 4.000 18 C -0.187 4.187 19 C 0.378 3.622 20 O -0.396 6.396 21 O -0.323 6.323 22 C -0.022 4.022 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.185 0.815 33 H 0.189 0.811 34 H 0.277 0.723 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.160 -25.585 0.105 26.316 hybrid contribution -1.019 1.056 1.442 2.057 sum 5.141 -24.528 1.546 25.109 Atomic orbital electron populations 1.69971 1.06076 1.26599 1.50867 1.25025 0.94874 0.99343 0.95227 0.86515 0.80159 0.83620 0.77607 1.19670 1.20961 1.20974 1.21256 0.93168 0.90827 1.50612 0.92484 1.19109 0.93783 0.90839 0.97424 1.21477 0.99199 0.91097 1.01657 1.23684 0.98794 0.95099 1.04571 1.87185 1.17979 1.00342 1.98096 1.22183 0.98685 0.92475 1.06505 1.20277 1.01404 0.97234 0.93979 1.23097 0.89694 0.89735 0.97957 1.67878 1.11308 1.09701 1.30648 1.23257 0.93075 0.97432 0.86218 1.20036 1.06344 0.99492 0.92786 1.20562 0.74887 0.78006 0.88793 1.90930 1.54140 1.63914 1.30612 1.84526 1.65143 1.40538 1.42121 1.21654 0.90132 0.90875 0.99500 0.92996 0.96394 0.96400 0.92356 0.92320 0.90304 0.90351 0.88436 0.88697 0.81499 0.81073 0.72298 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 10 C -0.10 -1.93 5.16 -26.73 -0.14 -2.07 16 11 C -0.07 -1.19 5.94 37.16 0.22 -0.97 16 12 S -0.27 -3.80 21.72 -107.50 -2.33 -6.13 16 13 C -0.05 -0.51 6.09 36.01 0.22 -0.29 16 14 C -0.13 -1.23 5.15 -104.54 -0.54 -1.77 16 15 C 0.15 1.44 10.85 -17.46 -0.19 1.25 16 16 N -0.49 -4.88 10.35 -12.89 -0.13 -5.02 16 17 C 0.16 1.38 10.79 -17.12 -0.18 1.20 16 18 C -0.18 -1.72 5.89 -104.83 -0.62 -2.34 16 19 C 0.53 4.90 8.28 34.61 0.29 5.19 16 20 O -0.51 -6.21 17.21 -19.24 -0.33 -6.54 16 21 O -0.51 -2.93 12.71 -40.52 -0.51 -3.45 16 22 C 0.01 0.06 9.39 -38.85 -0.36 -0.31 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.10 0.83 8.09 -51.92 -0.42 0.41 16 31 H 0.09 0.88 8.09 -51.92 -0.42 0.46 16 32 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.17 1.08 7.62 -52.49 -0.40 0.68 16 34 H 0.42 0.59 9.11 45.56 0.42 1.01 16 35 H 0.15 1.51 7.74 -52.49 -0.41 1.10 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -33.24 326.83 -8.26 -41.51 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -3.73 Total: -2.96 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.86 Total: -12.98 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 0.60 Total: -30.93 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.85 Total: -9.99 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -2.33 Total: -6.13 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.24 -8.26 -41.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065299.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.550 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds