Wall clock time and date at job start Tue Mar 31 2020 05:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00599 * 2 1 4 4 H 1.48501 * 109.46973 * 269.99979 * 3 2 1 5 5 H 1.48504 * 109.47026 * 29.99921 * 3 2 1 6 6 H 1.48500 * 109.47387 * 149.99773 * 3 2 1 7 7 C 1.37880 * 119.99268 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99761 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00624 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47288 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47190 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47286 * 180.02562 * 11 10 9 13 13 C 1.81394 * 103.00141 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47651 * 179.97438 * 13 12 11 15 15 C 1.38629 * 119.54595 * 270.02551 * 14 13 12 16 16 C 1.38578 * 119.35437 * 179.97438 * 15 14 13 17 17 C 1.38631 * 118.49439 * 359.72671 * 16 15 14 18 18 C 1.39312 * 119.05110 * 0.51106 * 17 16 15 19 19 C 1.48073 * 119.72184 * 179.75373 * 18 17 16 20 20 O 1.21427 * 120.00106 * 359.72725 * 19 18 17 21 21 O 1.34675 * 119.99960 * 179.72827 * 19 18 17 22 22 N 1.31474 * 119.54579 * 89.99295 * 14 13 12 23 23 H 0.97006 * 119.99214 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.46798 * 59.99238 * 9 7 2 25 25 H 1.08997 * 109.46456 * 299.99961 * 9 7 2 26 26 H 1.09000 * 109.47594 * 59.99504 * 10 9 7 27 27 H 1.09002 * 109.47497 * 300.00018 * 10 9 7 28 28 H 1.08997 * 109.46968 * 60.00056 * 11 10 9 29 29 H 1.08997 * 109.46559 * 300.00202 * 11 10 9 30 30 H 1.09000 * 109.47001 * 59.99773 * 13 12 11 31 31 H 1.09004 * 109.47086 * 300.00567 * 13 12 11 32 32 H 1.08003 * 120.32288 * 359.97438 * 15 14 13 33 33 H 1.08006 * 120.75642 * 180.02562 * 16 15 14 34 34 H 1.07998 * 120.47539 * 180.28758 * 17 16 15 35 35 H 0.96700 * 117.00166 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1943 0.0010 9 6 1.2509 -2.4993 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4799 -4.9872 0.0012 12 16 2.6586 -6.3661 0.0019 13 6 1.5803 -7.8247 0.0034 14 6 2.4241 -9.0733 0.0036 15 6 2.8065 -9.6401 -1.2024 16 6 3.5829 -10.7880 -1.1977 17 6 3.9565 -11.3286 0.0230 18 6 3.5317 -10.7086 1.1960 19 6 3.9175 -11.2767 2.5078 20 8 4.5973 -12.2816 2.5581 21 8 3.5145 -10.6787 3.6453 22 7 2.7880 -9.6098 1.1474 23 1 -0.4849 0.8402 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8717 -3.6045 0.8904 27 1 2.8717 -3.6045 -0.8894 28 1 0.8530 -5.0452 -0.8886 29 1 0.8536 -5.0446 0.8914 30 1 0.9509 -7.8121 -0.8864 31 1 0.9513 -7.8107 0.8936 32 1 2.5023 -9.1914 -2.1365 33 1 3.8940 -11.2482 -2.1239 34 1 4.5651 -12.2198 0.0640 35 1 3.7916 -11.0861 4.4774 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:01 Heat of formation + Delta-G solvation = -73.058145 kcal Electronic energy + Delta-G solvation = -17916.414152 eV Core-core repulsion = 14812.091497 eV Total energy + Delta-G solvation = -3104.322656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.13627 -39.79906 -36.46648 -34.47224 -33.50963 -32.98288 -32.03635 -28.45239 -27.41973 -25.78358 -23.54865 -22.83814 -21.75921 -20.24525 -18.74541 -17.77612 -16.82140 -16.47681 -16.24382 -16.18971 -15.78610 -14.91827 -14.67355 -14.59043 -14.25656 -13.75277 -13.63450 -13.16536 -13.05645 -12.54796 -12.39299 -11.89536 -11.73848 -11.72624 -11.26540 -10.94418 -10.88502 -10.57767 -10.38799 -10.03115 -9.96143 -9.80713 -9.41722 -9.27893 -9.09882 -8.37731 -7.48376 -6.02881 -4.05287 0.07544 0.63865 1.75524 2.15703 2.49960 2.78017 3.31522 3.37717 3.41786 3.45500 3.66302 4.19655 4.44729 4.48011 4.53975 4.61495 4.98108 4.99978 5.10443 5.33232 5.43097 5.48331 5.59238 5.60665 5.62255 6.04732 6.06422 6.10382 6.53368 6.69642 7.00041 7.25770 7.61082 7.62089 7.74104 7.96126 8.37899 9.01141 9.59010 11.08493 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.032956 B = 0.002560 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.403176 B =10933.732787 C =11327.842518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.095 4.095 11 C -0.074 4.074 12 S -0.255 6.255 13 C -0.047 4.047 14 C 0.148 3.852 15 C -0.119 4.119 16 C -0.081 4.081 17 C -0.106 4.106 18 C 0.089 3.911 19 C 0.546 3.454 20 O -0.510 6.510 21 O -0.489 6.489 22 N -0.420 5.420 23 H 0.261 0.739 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.490 -24.552 -0.742 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.134 4.134 11 C -0.222 4.222 12 S -0.027 6.027 13 C -0.195 4.195 14 C 0.006 3.994 15 C -0.141 4.141 16 C -0.107 4.107 17 C -0.127 4.127 18 C -0.048 4.048 19 C 0.389 3.611 20 O -0.398 6.398 21 O -0.298 6.298 22 N -0.132 5.132 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.167 0.833 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 5.243 -24.127 -0.263 24.692 hybrid contribution -0.488 0.262 -0.211 0.593 sum 4.754 -23.866 -0.475 24.339 Atomic orbital electron populations 1.69966 1.06073 1.26680 1.50817 1.25022 0.94871 0.99313 0.95244 0.86568 0.79873 0.83304 0.78127 1.20632 1.21201 1.19808 1.21224 0.93134 0.90855 1.50685 0.92543 1.19101 0.93784 0.90793 0.97437 1.21472 0.99201 0.91085 1.01650 1.23688 0.98856 0.95026 1.04609 1.87111 1.17582 0.99893 1.98092 1.22174 0.98717 0.91925 1.06722 1.20536 0.95975 0.94819 0.88053 1.22349 0.96471 0.95508 0.99743 1.21625 0.95742 0.94987 0.98325 1.22108 0.98481 1.00627 0.91529 1.19907 0.99675 0.94305 0.90905 1.20462 0.75813 0.80461 0.84401 1.90904 1.36404 1.24635 1.87857 1.84715 1.71754 1.56660 1.16682 1.67402 1.08305 1.07763 1.29772 0.92959 0.96410 0.96354 0.92310 0.92371 0.90340 0.90255 0.88153 0.87902 0.83330 0.83221 0.83079 0.72801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.70 4.97 -27.88 -0.14 0.57 16 10 C -0.09 -1.94 5.16 -26.73 -0.14 -2.08 16 11 C -0.07 -1.23 5.94 37.16 0.22 -1.00 16 12 S -0.26 -3.84 21.72 -107.50 -2.33 -6.18 16 13 C -0.05 -0.54 6.22 36.00 0.22 -0.32 16 14 C 0.15 1.66 6.04 -82.60 -0.50 1.16 16 15 C -0.12 -1.00 9.75 -39.31 -0.38 -1.38 16 16 C -0.08 -0.57 10.17 -39.31 -0.40 -0.97 16 17 C -0.11 -0.92 9.63 -39.04 -0.38 -1.29 16 18 C 0.09 1.00 6.75 -83.02 -0.56 0.44 16 19 C 0.55 6.02 8.32 34.77 0.29 6.31 16 20 O -0.51 -6.23 17.11 -19.21 -0.33 -6.56 16 21 O -0.49 -4.60 13.24 -40.43 -0.54 -5.13 16 22 N -0.42 -5.33 10.03 -6.07 -0.06 -5.39 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.10 0.91 8.08 -51.92 -0.42 0.49 16 31 H 0.10 1.19 8.14 -51.92 -0.42 0.76 16 32 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.15 1.06 7.64 -52.49 -0.40 0.66 16 35 H 0.41 1.69 9.11 45.56 0.42 2.11 16 LS Contribution 327.76 15.07 4.94 4.94 Total: -1.00 -33.92 327.76 -8.53 -42.45 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -3.75 Total: -2.68 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.17 Total: -12.05 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.68 Total: -31.38 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.86 Total: -11.69 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -2.33 Total: -6.18 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.92 -8.53 -42.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.610 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds