Wall clock time and date at job start Tue Mar 31 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47109 * 2 1 4 4 C 1.34776 * 120.00094 * 61.91990 * 3 2 1 5 5 O 1.21697 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.46375 * 120.00317 * 179.72628 * 4 3 2 7 7 H 1.07997 * 119.99363 * 0.26853 * 6 4 3 8 8 C 1.40047 * 120.00095 * 180.27681 * 6 4 3 9 9 N 1.30672 * 120.00071 * 359.97438 * 8 6 4 10 10 Si 1.86803 * 119.99733 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47173 * 59.99556 * 10 8 6 12 12 H 1.48496 * 109.46905 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47018 * 299.99677 * 10 8 6 14 14 C 1.50702 * 109.46632 * 119.99581 * 2 1 3 15 15 O 1.20832 * 120.00033 * 25.00525 * 14 2 1 16 16 O 1.34236 * 120.00025 * 204.99956 * 14 2 1 17 17 C 1.50703 * 109.47519 * 239.99571 * 2 1 3 18 18 C 1.38246 * 119.97365 * 273.98580 * 17 2 1 19 19 C 1.38195 * 120.02102 * 179.72562 * 18 17 2 20 20 C 1.38465 * 119.97748 * 0.52427 * 19 18 17 21 21 F 1.35094 * 120.02772 * 179.72144 * 20 19 18 22 22 C 1.38458 * 119.94609 * 359.75245 * 20 19 18 23 23 C 1.38204 * 119.97407 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.46453 * 60.00607 * 1 2 3 25 25 H 1.08999 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47539 * 300.00100 * 1 2 3 27 27 H 0.97001 * 120.00114 * 241.91488 * 3 2 1 28 28 H 0.97003 * 119.99591 * 180.02562 * 9 8 6 29 29 H 0.96697 * 116.99671 * 180.02562 * 16 14 2 30 30 H 1.08000 * 119.98522 * 359.97438 * 18 17 2 31 31 H 1.08001 * 120.01287 * 180.29769 * 19 18 17 32 32 H 1.07995 * 120.01550 * 179.97438 * 22 20 19 33 33 H 1.07994 * 119.98728 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7250 2.1997 1.0298 5 8 1.0548 1.7912 1.9599 6 6 2.2179 3.5779 1.0327 7 1 2.8130 3.9402 0.2075 8 6 1.9179 4.4267 2.1055 9 7 1.1976 3.9883 3.1038 10 14 2.5476 6.1853 2.1095 11 1 2.0160 6.9042 0.9237 12 1 2.0952 6.8703 3.3470 13 1 4.0318 6.1798 2.0606 14 6 2.0322 -0.7103 1.2306 15 8 1.3394 -1.5362 1.7765 16 8 3.2493 -0.4257 1.7202 17 6 2.0324 -0.7105 -1.2304 18 6 2.1842 -2.0846 -1.2209 19 6 2.6395 -2.7377 -2.3505 20 6 2.9540 -2.0143 -3.4885 21 9 3.4045 -2.6511 -4.5914 22 6 2.8070 -0.6375 -3.4949 23 6 2.3462 0.0129 -2.3659 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.5529 1.7067 -0.7411 28 1 0.9895 4.5764 3.8467 29 1 3.5279 -0.9073 2.5110 30 1 1.9431 -2.6481 -0.3317 31 1 2.7535 -3.8117 -2.3445 32 1 3.0523 -0.0721 -4.3817 33 1 2.2318 1.0868 -2.3705 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604269921.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:40 Heat of formation + Delta-G solvation = -143.005968 kcal Electronic energy + Delta-G solvation = -22125.339986 eV Core-core repulsion = 18451.770989 eV Total energy + Delta-G solvation = -3673.568997 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.98013 -40.56685 -38.77671 -37.35315 -35.58173 -34.39643 -32.50213 -31.40016 -30.50821 -28.84738 -26.23988 -24.76954 -23.26084 -22.40778 -20.70378 -19.21520 -18.21089 -17.53379 -17.31711 -16.53727 -16.15249 -15.67505 -15.61135 -15.28508 -14.79333 -14.26334 -13.84614 -13.59409 -13.46318 -13.32902 -13.01547 -12.73229 -12.35188 -12.23219 -11.66891 -11.58700 -11.28583 -11.18786 -11.06575 -10.99324 -10.84474 -10.55027 -10.32617 -10.03290 -9.20987 -8.93285 -8.69404 -7.83682 -7.73213 -6.28012 -4.74632 1.00163 1.13035 2.75395 3.11251 3.16789 3.18190 3.40881 3.60154 4.01004 4.15022 4.39919 4.48401 4.67201 4.72897 4.81374 5.18336 5.28992 5.38745 5.72926 5.79091 5.82571 5.89212 6.00819 6.09965 6.16739 6.26022 6.41001 6.75123 6.85667 7.06878 7.34557 7.63573 7.83019 8.18157 8.49341 8.92834 9.30943 10.46133 10.64541 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023543 B = 0.005144 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.026734 B = 5442.001037 C = 6169.549791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.242 3.758 3 N -0.750 5.750 4 C 0.557 3.443 5 O -0.570 6.570 6 C -0.540 4.540 7 H 0.069 0.931 8 C 0.089 3.911 9 N -0.764 5.764 10 Si 0.909 3.091 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.267 1.267 14 C 0.500 3.500 15 O -0.527 6.527 16 O -0.498 6.498 17 C -0.085 4.085 18 C -0.085 4.085 19 C -0.148 4.148 20 C 0.094 3.906 21 F -0.142 7.142 22 C -0.148 4.148 23 C -0.074 4.074 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.386 0.614 28 H 0.270 0.730 29 H 0.399 0.601 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 -8.167 -10.692 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.152 3.848 3 N -0.409 5.409 4 C 0.363 3.637 5 O -0.453 6.453 6 C -0.576 4.576 7 H 0.087 0.913 8 C -0.132 4.132 9 N -0.392 5.392 10 Si 0.734 3.266 11 H -0.192 1.192 12 H -0.205 1.205 13 H -0.192 1.192 14 C 0.341 3.659 15 O -0.415 6.415 16 O -0.307 6.307 17 C -0.086 4.086 18 C -0.103 4.103 19 C -0.167 4.167 20 C 0.075 3.925 21 F -0.121 7.121 22 C -0.167 4.167 23 C -0.092 4.092 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.221 0.779 28 H 0.081 0.919 29 H 0.256 0.744 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.914 -8.446 -10.048 13.445 hybrid contribution 0.877 0.568 0.049 1.046 sum 3.791 -7.878 -9.999 13.282 Atomic orbital electron populations 1.22111 0.90801 1.02580 1.04782 1.18506 0.95218 0.84770 0.86331 1.46523 1.59568 1.08021 1.26813 1.18258 0.79962 0.85630 0.79870 1.90618 1.42687 1.76228 1.35719 1.20764 1.35345 0.94708 1.06795 0.91284 1.25691 0.93339 0.99712 0.94458 1.69998 1.27484 1.35722 1.05989 0.86406 0.79826 0.82194 0.78195 1.19228 1.20549 1.19231 1.23640 0.78371 0.78770 0.85115 1.90626 1.56896 1.34183 1.59816 1.84613 1.34733 1.65358 1.46034 1.19744 1.00065 0.93817 0.94969 1.20983 0.97315 0.93636 0.98364 1.21057 1.02635 1.00763 0.92237 1.17733 1.00310 0.90895 0.83594 1.91487 1.86802 1.82252 1.51533 1.21120 1.02871 0.92523 1.00137 1.20886 0.96351 1.00854 0.91120 0.91538 0.91881 0.88707 0.77867 0.91912 0.74431 0.84701 0.84567 0.84334 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 7.94 37.16 0.30 -2.46 16 2 C 0.24 4.56 0.86 -134.12 -0.12 4.45 16 3 N -0.75 -15.59 4.68 -51.16 -0.24 -15.83 16 4 C 0.56 14.75 7.02 -12.99 -0.09 14.66 16 5 O -0.57 -17.15 12.26 5.19 0.06 -17.09 16 6 C -0.54 -14.39 9.54 -35.63 -0.34 -14.73 16 7 H 0.07 1.67 7.85 -52.49 -0.41 1.26 16 8 C 0.09 2.36 5.50 -17.37 -0.10 2.27 16 9 N -0.76 -22.02 11.83 55.55 0.66 -21.36 16 10 Si 0.91 19.37 29.56 -169.99 -5.02 14.35 16 11 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 12 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 14 C 0.50 10.26 4.46 36.01 0.16 10.42 16 15 O -0.53 -11.48 16.26 -18.75 -0.31 -11.78 16 16 O -0.50 -9.57 12.97 -39.27 -0.51 -10.08 16 17 C -0.09 -1.28 4.81 -104.62 -0.50 -1.79 16 18 C -0.08 -1.16 9.14 -39.59 -0.36 -1.52 16 19 C -0.15 -1.76 10.03 -39.51 -0.40 -2.16 16 20 C 0.09 1.13 7.30 -39.42 -0.29 0.84 16 21 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 22 C -0.15 -1.69 10.03 -39.51 -0.40 -2.08 16 23 C -0.07 -0.95 9.03 -39.59 -0.36 -1.31 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.06 1.09 7.87 -51.93 -0.41 0.68 16 26 H 0.09 2.19 6.30 -51.93 -0.33 1.87 16 27 H 0.39 6.94 6.34 -40.82 -0.26 6.69 16 28 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 29 H 0.40 5.80 9.10 45.56 0.41 6.22 16 30 H 0.14 1.89 6.74 -52.49 -0.35 1.53 16 31 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.14 1.70 6.42 -52.49 -0.34 1.36 16 LS Contribution 294.98 15.07 4.45 4.45 Total: -1.00 -33.97 294.98 -5.45 -39.41 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -2.08 Total: 13.02 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -2.49 Total: 6.59 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.42 Total: -37.19 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.75 Total: -38.95 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.97 -5.45 -39.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604269921.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.592 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds