Wall clock time and date at job start Tue Mar 31 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47109 * 2 1 4 4 C 1.34776 * 120.00094 * 61.91990 * 3 2 1 5 5 O 1.21697 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.46375 * 120.00317 * 179.72628 * 4 3 2 7 7 H 1.07997 * 119.99363 * 0.26853 * 6 4 3 8 8 C 1.40047 * 120.00095 * 180.27681 * 6 4 3 9 9 N 1.30672 * 120.00071 * 359.97438 * 8 6 4 10 10 Si 1.86803 * 119.99733 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47173 * 59.99556 * 10 8 6 12 12 H 1.48496 * 109.46905 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47018 * 299.99677 * 10 8 6 14 14 C 1.50702 * 109.46632 * 119.99581 * 2 1 3 15 15 O 1.20832 * 120.00033 * 25.00525 * 14 2 1 16 16 O 1.34236 * 120.00025 * 204.99956 * 14 2 1 17 17 C 1.50703 * 109.47519 * 239.99571 * 2 1 3 18 18 C 1.38246 * 119.97365 * 273.98580 * 17 2 1 19 19 C 1.38195 * 120.02102 * 179.72562 * 18 17 2 20 20 C 1.38465 * 119.97748 * 0.52427 * 19 18 17 21 21 F 1.35094 * 120.02772 * 179.72144 * 20 19 18 22 22 C 1.38458 * 119.94609 * 359.75245 * 20 19 18 23 23 C 1.38204 * 119.97407 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.46453 * 60.00607 * 1 2 3 25 25 H 1.08999 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47539 * 300.00100 * 1 2 3 27 27 H 0.97001 * 120.00114 * 241.91488 * 3 2 1 28 28 H 0.97003 * 119.99591 * 180.02562 * 9 8 6 29 29 H 0.96697 * 116.99671 * 180.02562 * 16 14 2 30 30 H 1.08000 * 119.98522 * 359.97438 * 18 17 2 31 31 H 1.08001 * 120.01287 * 180.29769 * 19 18 17 32 32 H 1.07995 * 120.01550 * 179.97438 * 22 20 19 33 33 H 1.07994 * 119.98728 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7250 2.1997 1.0298 5 8 1.0548 1.7912 1.9599 6 6 2.2179 3.5779 1.0327 7 1 2.8130 3.9402 0.2075 8 6 1.9179 4.4267 2.1055 9 7 1.1976 3.9883 3.1038 10 14 2.5476 6.1853 2.1095 11 1 2.0160 6.9042 0.9237 12 1 2.0952 6.8703 3.3470 13 1 4.0318 6.1798 2.0606 14 6 2.0322 -0.7103 1.2306 15 8 1.3394 -1.5362 1.7765 16 8 3.2493 -0.4257 1.7202 17 6 2.0324 -0.7105 -1.2304 18 6 2.1842 -2.0846 -1.2209 19 6 2.6395 -2.7377 -2.3505 20 6 2.9540 -2.0143 -3.4885 21 9 3.4045 -2.6511 -4.5914 22 6 2.8070 -0.6375 -3.4949 23 6 2.3462 0.0129 -2.3659 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.5529 1.7067 -0.7411 28 1 0.9895 4.5764 3.8467 29 1 3.5279 -0.9073 2.5110 30 1 1.9431 -2.6481 -0.3317 31 1 2.7535 -3.8117 -2.3445 32 1 3.0523 -0.0721 -4.3817 33 1 2.2318 1.0868 -2.3705 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604269921.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:40 Heat of formation + Delta-G solvation = -167.205635 kcal Electronic energy + Delta-G solvation = -22126.389362 eV Core-core repulsion = 18451.770989 eV Total energy + Delta-G solvation = -3674.618373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.92282 -42.04338 -40.05192 -39.15748 -37.17589 -36.06630 -34.52061 -32.57581 -31.92004 -30.15333 -28.20104 -26.29174 -24.40001 -23.57692 -22.35130 -20.82209 -19.71856 -19.12602 -18.60993 -18.00438 -17.64984 -17.15807 -16.80950 -16.61263 -16.16955 -15.80021 -15.37569 -14.99365 -14.74298 -14.56647 -14.38318 -14.27024 -14.03064 -13.46591 -13.27841 -13.12677 -12.91881 -12.69547 -12.65275 -12.52812 -12.51005 -12.09272 -12.02196 -11.62665 -10.88834 -10.16825 -9.87462 -9.77408 -9.57860 -8.26894 -6.83106 -0.03292 0.16985 1.15489 1.43834 1.46168 1.57622 2.05434 2.25203 2.46450 2.52368 2.84822 3.16917 3.40876 3.60928 3.71167 3.89583 4.03771 4.20746 4.25714 4.39074 4.65320 4.71925 4.82509 4.86870 5.05110 5.11596 5.22369 5.33244 5.35301 5.55286 5.79298 5.86696 6.00902 6.24206 6.89702 6.96998 7.46699 8.48029 8.67726 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023543 B = 0.005144 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.026734 B = 5442.001037 C = 6169.549791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.240 3.760 3 N -0.735 5.735 4 C 0.547 3.453 5 O -0.615 6.615 6 C -0.566 4.566 7 H 0.091 0.909 8 C 0.033 3.967 9 N -0.818 5.818 10 Si 0.993 3.007 11 H -0.253 1.253 12 H -0.279 1.279 13 H -0.256 1.256 14 C 0.494 3.506 15 O -0.548 6.548 16 O -0.505 6.505 17 C -0.101 4.101 18 C -0.091 4.091 19 C -0.141 4.141 20 C 0.094 3.906 21 F -0.140 7.140 22 C -0.136 4.136 23 C -0.074 4.074 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.401 0.599 28 H 0.273 0.727 29 H 0.415 0.585 30 H 0.126 0.874 31 H 0.159 0.841 32 H 0.168 0.832 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.240 -7.618 -13.129 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.151 3.849 3 N -0.394 5.394 4 C 0.352 3.648 5 O -0.501 6.501 6 C -0.603 4.603 7 H 0.109 0.891 8 C -0.182 4.182 9 N -0.448 5.448 10 Si 0.813 3.187 11 H -0.177 1.177 12 H -0.204 1.204 13 H -0.180 1.180 14 C 0.336 3.664 15 O -0.439 6.439 16 O -0.316 6.316 17 C -0.101 4.101 18 C -0.109 4.109 19 C -0.159 4.159 20 C 0.075 3.925 21 F -0.118 7.118 22 C -0.154 4.154 23 C -0.092 4.092 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.239 0.761 28 H 0.083 0.917 29 H 0.275 0.725 30 H 0.144 0.856 31 H 0.177 0.823 32 H 0.185 0.815 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.394 -7.922 -12.534 15.466 hybrid contribution 0.458 0.273 0.749 0.920 sum 4.852 -7.649 -11.785 14.864 Atomic orbital electron populations 1.22019 0.91376 1.02983 1.03321 1.18594 0.94961 0.83685 0.87689 1.46081 1.58948 1.08529 1.25856 1.18514 0.79466 0.86484 0.80302 1.90593 1.44429 1.77279 1.37758 1.21339 1.35805 0.95313 1.07810 0.89121 1.26875 0.92912 1.04901 0.93561 1.70174 1.29498 1.37949 1.07150 0.85126 0.79507 0.75474 0.78563 1.17681 1.20425 1.17988 1.24038 0.78382 0.78516 0.85434 1.90601 1.57427 1.35313 1.60521 1.84568 1.34312 1.65685 1.47066 1.19498 1.02353 0.94288 0.93987 1.20911 0.98024 0.93092 0.98891 1.21225 1.01383 1.01948 0.91385 1.17852 0.99833 0.91246 0.83548 1.91502 1.86699 1.82258 1.51371 1.21359 1.01236 0.92445 1.00387 1.20952 0.96233 1.01246 0.90773 0.89565 0.90561 0.93355 0.76105 0.91714 0.72481 0.85566 0.82299 0.81457 0.83074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 7.94 71.98 0.57 -4.82 16 2 C 0.24 9.09 0.86 2.11 0.00 9.09 16 3 N -0.74 -30.51 4.68 -433.99 -2.03 -32.54 16 4 C 0.55 29.51 7.02 86.36 0.61 30.12 16 5 O -0.61 -38.47 12.26 -4.34 -0.05 -38.53 16 6 C -0.57 -30.19 9.54 24.83 0.24 -29.95 16 7 H 0.09 4.26 7.85 -2.91 -0.02 4.24 16 8 C 0.03 1.77 5.50 85.30 0.47 2.24 16 9 N -0.82 -48.48 11.83 21.84 0.26 -48.22 16 10 Si 0.99 39.32 29.56 68.60 2.03 41.35 16 11 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 12 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 13 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 14 C 0.49 20.68 4.46 71.24 0.32 21.00 16 15 O -0.55 -24.62 16.26 21.95 0.36 -24.26 16 16 O -0.51 -19.67 12.97 -51.48 -0.67 -20.34 16 17 C -0.10 -2.90 4.81 -19.86 -0.10 -2.99 16 18 C -0.09 -2.36 9.14 22.26 0.20 -2.16 16 19 C -0.14 -2.98 10.03 22.31 0.22 -2.75 16 20 C 0.09 1.96 7.30 22.38 0.16 2.12 16 21 F -0.14 -2.90 17.27 44.97 0.78 -2.12 16 22 C -0.14 -2.62 10.03 22.31 0.22 -2.39 16 23 C -0.07 -1.72 9.03 22.26 0.20 -1.51 16 24 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 25 H 0.08 2.68 7.87 -2.39 -0.02 2.66 16 26 H 0.05 2.34 6.30 -2.39 -0.02 2.32 16 27 H 0.40 13.96 6.34 -92.71 -0.59 13.38 16 28 H 0.27 14.83 8.29 -92.71 -0.77 14.06 16 29 H 0.42 12.34 9.10 -74.06 -0.67 11.66 16 30 H 0.13 3.49 6.74 -2.91 -0.02 3.47 16 31 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 32 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.15 3.19 6.42 -2.91 -0.02 3.18 16 Total: -1.00 -75.41 294.98 3.72 -71.69 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: -0.07 Total: 34.99 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: 3.12 Total: 17.98 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -1.77 Total: -80.76 kcal Atomic # 8 Polarization: -82.77 SS G_CDS: -0.36 Total: -83.13 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -75.41 3.72 -71.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604269921.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.511 kcal (2) G-P(sol) polarization free energy of solvation -75.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds