Wall clock time and date at job start Tue Mar 31 2020 05:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99742 * 2 1 4 4 H 1.48501 * 109.46726 * 240.00074 * 3 2 1 5 5 H 1.48503 * 109.47090 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46960 * 120.00247 * 3 2 1 7 7 C 1.37877 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99320 * 173.58584 * 7 2 1 9 9 C 1.50696 * 120.00404 * 353.58652 * 7 2 1 10 10 C 1.52999 * 115.54727 * 85.44039 * 9 7 2 11 11 N 1.46901 * 109.47168 * 65.04976 * 10 9 7 12 12 C 1.46904 * 111.00169 * 185.34695 * 11 10 9 13 13 C 1.50694 * 109.47155 * 179.97438 * 12 11 10 14 14 C 1.37416 * 123.35548 * 260.16321 * 13 12 11 15 15 C 1.33861 * 115.10766 * 180.30819 * 14 13 12 16 16 S 1.70616 * 110.96398 * 359.74974 * 15 14 13 17 17 C 1.36753 * 123.35622 * 80.00732 * 13 12 11 18 18 C 1.46392 * 125.46293 * 359.97438 * 17 13 12 19 19 O 1.21627 * 119.99626 * 359.72433 * 18 17 13 20 20 O 1.34890 * 120.00244 * 179.71842 * 18 17 13 21 21 C 1.53000 * 117.49742 * 231.10995 * 9 7 2 22 22 C 1.52999 * 117.49713 * 299.77158 * 9 7 2 23 23 H 0.96994 * 120.00542 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47715 * 305.04708 * 10 9 7 25 25 H 1.08999 * 109.47076 * 185.04578 * 10 9 7 26 26 H 1.00904 * 111.00003 * 61.39630 * 11 10 9 27 27 H 1.09011 * 109.46421 * 60.00036 * 12 11 10 28 28 H 1.08994 * 109.47237 * 300.00607 * 12 11 10 29 29 H 1.08002 * 122.44871 * 0.06130 * 14 13 12 30 30 H 1.08009 * 124.51805 * 179.75182 * 15 14 13 31 31 H 0.96696 * 117.00523 * 179.97438 * 20 18 17 32 32 H 1.09003 * 117.49638 * 215.00411 * 21 9 7 33 33 H 1.08995 * 117.50138 * 0.02690 * 21 9 7 34 34 H 1.08994 * 117.50094 * 359.97438 * 22 9 7 35 35 H 1.09004 * 117.49555 * 144.97823 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1969 -0.1050 9 6 1.2581 -2.4951 0.1447 10 6 0.7035 -3.0860 -1.1531 11 7 1.8165 -3.4572 -2.0371 12 6 1.3221 -3.9109 -3.3439 13 6 2.4896 -4.2816 -4.2216 14 6 2.9980 -3.4527 -5.1926 15 6 4.0332 -3.9509 -5.8797 16 16 4.4361 -5.5144 -5.3283 17 6 3.1508 -5.4750 -4.1291 18 6 2.8353 -6.5500 -3.1867 19 8 1.9204 -6.4167 -2.3964 20 8 3.5590 -7.6882 -3.1950 21 6 1.7461 -3.4739 1.2147 22 6 0.4405 -2.7018 1.4212 23 1 -0.4851 0.8399 -0.0004 24 1 0.0759 -2.3464 -1.6501 25 1 0.1101 -3.9714 -0.9247 26 1 2.4005 -4.1592 -1.6079 27 1 0.7535 -3.1092 -3.8155 28 1 0.6793 -4.7804 -3.2073 29 1 2.5896 -2.4725 -5.3899 30 1 4.5452 -3.4322 -6.6768 31 1 3.3135 -8.3693 -2.5540 32 1 1.6719 -4.5387 0.9941 33 1 2.6066 -3.1765 1.8139 34 1 0.4427 -1.8969 2.1561 35 1 -0.4929 -3.2585 1.3364 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608177939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:10 Heat of formation + Delta-G solvation = -29.672034 kcal Electronic energy + Delta-G solvation = -19634.641037 eV Core-core repulsion = 16532.199744 eV Total energy + Delta-G solvation = -3102.441293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.22517 -38.26762 -36.74893 -36.00904 -33.86247 -31.74695 -30.22457 -27.55265 -25.45948 -24.20225 -22.73385 -22.17504 -20.90067 -19.04174 -18.89483 -18.48806 -17.34931 -16.03112 -15.69883 -15.62162 -14.88201 -14.78741 -14.36271 -13.98109 -13.47869 -13.26879 -13.11012 -12.70884 -12.57011 -12.22508 -11.66367 -11.50175 -11.39439 -11.15403 -10.85778 -10.79767 -10.60893 -10.52329 -10.36176 -10.06715 -9.37348 -8.96193 -8.70944 -8.50689 -8.28140 -7.94631 -7.40315 -5.87588 -3.88599 0.34304 1.42005 1.84248 2.24493 2.91490 2.96823 3.40455 3.43980 3.47716 4.53908 4.80654 5.02578 5.17625 5.25557 5.42403 5.43473 5.59305 5.76364 5.92479 6.04530 6.22886 6.29572 6.40906 6.48350 6.51287 6.66580 6.76199 6.85739 6.98330 7.21937 7.57565 7.68722 7.81200 8.04007 8.05510 8.28269 8.66112 9.09999 9.73649 11.22416 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.005149 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.705139 B = 5436.461983 C = 6369.985070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.468 4.468 8 H 0.058 0.942 9 C 0.053 3.947 10 C 0.110 3.890 11 N -0.655 5.655 12 C 0.104 3.896 13 C 0.017 3.983 14 C -0.134 4.134 15 C -0.227 4.227 16 S 0.222 5.778 17 C -0.273 4.273 18 C 0.555 3.445 19 O -0.496 6.496 20 O -0.517 6.517 21 C -0.216 4.216 22 C -0.157 4.157 23 H 0.257 0.743 24 H 0.075 0.925 25 H -0.003 1.003 26 H 0.332 0.668 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.151 0.849 30 H 0.170 0.830 31 H 0.415 0.585 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.674 -12.489 -11.870 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.506 4.506 8 H 0.076 0.924 9 C 0.052 3.948 10 C -0.019 4.019 11 N -0.285 5.285 12 C -0.027 4.027 13 C 0.001 3.999 14 C -0.165 4.165 15 C -0.364 4.364 16 S 0.491 5.509 17 C -0.391 4.391 18 C 0.399 3.601 19 O -0.385 6.385 20 O -0.330 6.330 21 C -0.253 4.253 22 C -0.196 4.196 23 H 0.067 0.933 24 H 0.094 0.906 25 H 0.016 0.984 26 H 0.150 0.850 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.169 0.831 30 H 0.188 0.812 31 H 0.274 0.726 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.605 -12.435 -12.600 19.267 hybrid contribution -1.136 0.791 1.009 1.713 sum 6.470 -11.643 -11.591 17.657 Atomic orbital electron populations 1.70006 1.05762 1.26136 1.50561 1.24931 0.94743 0.98609 0.95166 0.86740 0.79628 0.83527 0.78513 1.20332 1.21569 1.20511 1.20277 0.92768 0.88446 1.49086 0.92404 1.18804 0.97129 0.93613 0.85233 1.21519 0.90575 0.95857 0.93911 1.60501 1.21770 1.44180 1.02064 1.20755 0.91731 0.99301 0.90912 1.19664 0.95878 0.89852 0.94555 1.19951 0.97829 1.01924 0.96826 1.25445 1.03143 1.01521 1.06305 1.83005 1.29749 1.11485 1.26708 1.23224 1.08377 0.99370 1.08177 1.19325 0.79047 0.80522 0.81218 1.90980 1.29410 1.80208 1.37922 1.84568 1.59665 1.27579 1.61152 1.22987 0.98415 0.95610 1.08337 1.22508 0.91991 1.01112 1.03954 0.93341 0.90638 0.98445 0.85028 0.90176 0.93325 0.83106 0.81208 0.72594 0.92121 0.90659 0.90116 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 12.92 55.43 0.72 -24.92 16 2 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.47 -13.12 8.74 -34.44 -0.30 -13.42 16 8 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 9 C 0.05 1.36 1.55 -155.66 -0.24 1.11 16 10 C 0.11 2.60 5.51 -3.82 -0.02 2.58 16 11 N -0.65 -13.85 6.36 -115.06 -0.73 -14.58 16 12 C 0.10 1.84 5.12 -4.98 -0.03 1.82 16 13 C 0.02 0.26 5.42 -105.46 -0.57 -0.32 16 14 C -0.13 -1.74 9.95 -41.42 -0.41 -2.16 16 15 C -0.23 -2.38 10.92 29.20 0.32 -2.06 16 16 S 0.22 2.35 22.92 -107.50 -2.46 -0.12 16 17 C -0.27 -3.83 6.45 -36.84 -0.24 -4.07 16 18 C 0.56 7.87 8.29 34.01 0.28 8.15 16 19 O -0.50 -8.48 14.26 -19.36 -0.28 -8.75 16 20 O -0.52 -5.38 13.29 -41.01 -0.54 -5.93 16 21 C -0.22 -5.02 9.96 -26.69 -0.27 -5.28 16 22 C -0.16 -3.89 9.41 -26.69 -0.25 -4.14 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.08 1.94 8.13 -51.93 -0.42 1.52 16 25 H 0.00 -0.06 8.09 -51.93 -0.42 -0.48 16 26 H 0.33 7.07 7.72 -39.29 -0.30 6.77 16 27 H 0.08 1.38 8.10 -51.92 -0.42 0.96 16 28 H 0.05 0.89 6.66 -51.93 -0.35 0.54 16 29 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.17 1.28 8.06 -52.48 -0.42 0.85 16 31 H 0.42 2.44 9.11 45.56 0.42 2.86 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 34 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 35 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 319.95 15.07 4.82 4.82 Total: -1.00 -31.90 319.95 -8.90 -40.81 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -3.58 Total: 7.93 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.82 Total: -16.00 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: -0.02 Total: -39.50 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.82 Total: -14.68 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.46 Total: -0.12 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.90 -8.90 -40.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608177939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.134 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds