Wall clock time and date at job start Tue Mar 31 2020 05:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99742 * 2 1 4 4 H 1.48501 * 109.46726 * 240.00074 * 3 2 1 5 5 H 1.48503 * 109.47090 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46960 * 120.00247 * 3 2 1 7 7 C 1.37877 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99320 * 173.58584 * 7 2 1 9 9 C 1.50696 * 120.00404 * 353.58652 * 7 2 1 10 10 C 1.52999 * 115.54727 * 85.44039 * 9 7 2 11 11 N 1.46901 * 109.47168 * 65.04976 * 10 9 7 12 12 C 1.46904 * 111.00169 * 185.34695 * 11 10 9 13 13 C 1.50694 * 109.47155 * 179.97438 * 12 11 10 14 14 C 1.37416 * 123.35548 * 260.16321 * 13 12 11 15 15 C 1.33861 * 115.10766 * 180.30819 * 14 13 12 16 16 S 1.70616 * 110.96398 * 359.74974 * 15 14 13 17 17 C 1.36753 * 123.35622 * 80.00732 * 13 12 11 18 18 C 1.46392 * 125.46293 * 359.97438 * 17 13 12 19 19 O 1.21627 * 119.99626 * 359.72433 * 18 17 13 20 20 O 1.34890 * 120.00244 * 179.71842 * 18 17 13 21 21 C 1.53000 * 117.49742 * 231.10995 * 9 7 2 22 22 C 1.52999 * 117.49713 * 299.77158 * 9 7 2 23 23 H 0.96994 * 120.00542 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47715 * 305.04708 * 10 9 7 25 25 H 1.08999 * 109.47076 * 185.04578 * 10 9 7 26 26 H 1.00904 * 111.00003 * 61.39630 * 11 10 9 27 27 H 1.09011 * 109.46421 * 60.00036 * 12 11 10 28 28 H 1.08994 * 109.47237 * 300.00607 * 12 11 10 29 29 H 1.08002 * 122.44871 * 0.06130 * 14 13 12 30 30 H 1.08009 * 124.51805 * 179.75182 * 15 14 13 31 31 H 0.96696 * 117.00523 * 179.97438 * 20 18 17 32 32 H 1.09003 * 117.49638 * 215.00411 * 21 9 7 33 33 H 1.08995 * 117.50138 * 0.02690 * 21 9 7 34 34 H 1.08994 * 117.50094 * 359.97438 * 22 9 7 35 35 H 1.09004 * 117.49555 * 144.97823 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1969 -0.1050 9 6 1.2581 -2.4951 0.1447 10 6 0.7035 -3.0860 -1.1531 11 7 1.8165 -3.4572 -2.0371 12 6 1.3221 -3.9109 -3.3439 13 6 2.4896 -4.2816 -4.2216 14 6 2.9980 -3.4527 -5.1926 15 6 4.0332 -3.9509 -5.8797 16 16 4.4361 -5.5144 -5.3283 17 6 3.1508 -5.4750 -4.1291 18 6 2.8353 -6.5500 -3.1867 19 8 1.9204 -6.4167 -2.3964 20 8 3.5590 -7.6882 -3.1950 21 6 1.7461 -3.4739 1.2147 22 6 0.4405 -2.7018 1.4212 23 1 -0.4851 0.8399 -0.0004 24 1 0.0759 -2.3464 -1.6501 25 1 0.1101 -3.9714 -0.9247 26 1 2.4005 -4.1592 -1.6079 27 1 0.7535 -3.1092 -3.8155 28 1 0.6793 -4.7804 -3.2073 29 1 2.5896 -2.4725 -5.3899 30 1 4.5452 -3.4322 -6.6768 31 1 3.3135 -8.3693 -2.5540 32 1 1.6719 -4.5387 0.9941 33 1 2.6066 -3.1765 1.8139 34 1 0.4427 -1.8969 2.1561 35 1 -0.4929 -3.2585 1.3364 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608177939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:09 Heat of formation + Delta-G solvation = -51.101922 kcal Electronic energy + Delta-G solvation = -19635.570307 eV Core-core repulsion = 16532.199744 eV Total energy + Delta-G solvation = -3103.370562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.27470 -39.39180 -38.55532 -37.01416 -35.46030 -33.88103 -31.29421 -28.96580 -27.49420 -25.71588 -23.99898 -23.33195 -22.81748 -20.95368 -19.85016 -19.67506 -18.48605 -17.84170 -16.80449 -16.74580 -16.61943 -16.22041 -15.83506 -15.57159 -15.18510 -14.88701 -14.25424 -13.91129 -13.83438 -13.70441 -13.12802 -13.07812 -12.83510 -12.73093 -12.60481 -12.56509 -12.33041 -12.03966 -11.87441 -11.65086 -11.33075 -10.74686 -10.37523 -10.00049 -9.88850 -9.43537 -9.05901 -8.01764 -6.08864 -0.65451 0.49612 0.93199 1.24132 1.44839 1.46143 1.53316 1.86142 2.05127 2.49377 3.27257 3.37015 3.70672 3.87260 4.05181 4.26016 4.34715 4.49253 4.54635 4.55917 4.69650 4.74876 4.82358 4.95543 4.97074 5.04755 5.21208 5.24750 5.42843 5.52333 5.61062 5.72532 5.87437 6.29975 6.48276 6.65440 6.92251 6.93548 7.56006 9.07497 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.005149 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.705139 B = 5436.461983 C = 6369.985070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.022 3.978 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.482 4.482 8 H 0.047 0.953 9 C 0.027 3.973 10 C 0.126 3.874 11 N -0.660 5.660 12 C 0.110 3.890 13 C -0.006 4.006 14 C -0.160 4.160 15 C -0.211 4.211 16 S 0.297 5.703 17 C -0.303 4.303 18 C 0.557 3.443 19 O -0.536 6.536 20 O -0.504 6.504 21 C -0.192 4.192 22 C -0.162 4.162 23 H 0.257 0.743 24 H 0.047 0.953 25 H -0.003 1.003 26 H 0.332 0.668 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.152 0.848 30 H 0.206 0.794 31 H 0.435 0.565 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.841 -13.136 -13.294 20.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.774 3.226 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.027 3.973 10 C -0.003 4.003 11 N -0.290 5.290 12 C -0.021 4.021 13 C -0.023 4.023 14 C -0.190 4.190 15 C -0.348 4.348 16 S 0.566 5.434 17 C -0.422 4.422 18 C 0.402 3.598 19 O -0.428 6.428 20 O -0.319 6.319 21 C -0.229 4.229 22 C -0.200 4.200 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.015 0.985 26 H 0.149 0.851 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.169 0.831 30 H 0.223 0.777 31 H 0.297 0.703 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.798 -13.117 -14.030 21.561 hybrid contribution -1.710 0.874 1.371 2.360 sum 8.088 -12.243 -12.659 19.379 Atomic orbital electron populations 1.70117 1.06956 1.26777 1.51297 1.25604 0.95517 1.01630 0.94906 0.85779 0.78461 0.79723 0.78593 1.19898 1.21155 1.20014 1.20468 0.92434 0.89889 1.49174 0.93462 1.18934 0.98111 0.93951 0.86344 1.21171 0.90878 0.94826 0.93429 1.60413 1.20978 1.44706 1.02880 1.20631 0.93167 0.98574 0.89724 1.19499 0.95965 0.91321 0.95481 1.19962 0.99302 1.02184 0.97545 1.25891 1.01575 1.01593 1.05785 1.82749 1.26525 1.10451 1.23673 1.23459 1.10028 0.99100 1.09587 1.19451 0.78528 0.81196 0.80603 1.90959 1.31173 1.81086 1.39586 1.84517 1.58611 1.27055 1.61692 1.22941 0.97461 0.96100 1.06387 1.22427 0.93158 1.01167 1.03236 0.93418 0.93462 0.98494 0.85120 0.90678 0.94279 0.83075 0.77662 0.70286 0.90301 0.90375 0.91971 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.65 12.92 21.45 0.28 -53.38 16 2 C 0.02 1.27 5.39 84.65 0.46 1.72 16 3 Si 0.95 44.85 29.54 68.60 2.03 46.88 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.48 -27.34 8.74 25.60 0.22 -27.12 16 8 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 9 C 0.03 1.42 1.55 -52.93 -0.08 1.34 16 10 C 0.13 6.15 5.51 86.30 0.48 6.63 16 11 N -0.66 -28.56 6.36 -517.94 -3.29 -31.85 16 12 C 0.11 4.01 5.12 85.55 0.44 4.45 16 13 C -0.01 -0.17 5.42 -20.41 -0.11 -0.28 16 14 C -0.16 -3.95 9.95 21.08 0.21 -3.74 16 15 C -0.21 -3.74 10.92 66.82 0.73 -3.01 16 16 S 0.30 5.30 22.92 -56.49 -1.29 4.00 16 17 C -0.30 -8.13 6.45 24.05 0.16 -7.98 16 18 C 0.56 15.32 8.29 69.94 0.58 15.90 16 19 O -0.54 -18.46 14.26 19.42 0.28 -18.18 16 20 O -0.50 -9.48 13.29 -58.04 -0.77 -10.25 16 21 C -0.19 -8.82 9.96 30.62 0.30 -8.52 16 22 C -0.16 -8.07 9.41 30.62 0.29 -7.78 16 23 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.05 2.53 8.13 -2.39 -0.02 2.52 16 25 H 0.00 -0.14 8.09 -2.39 -0.02 -0.16 16 26 H 0.33 14.33 7.72 -89.69 -0.69 13.64 16 27 H 0.07 2.73 8.10 -2.38 -0.02 2.71 16 28 H 0.04 1.49 6.66 -2.39 -0.02 1.48 16 29 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.21 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.43 4.25 9.11 -74.06 -0.67 3.57 16 32 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 33 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 34 H 0.06 3.29 8.14 -2.39 -0.02 3.28 16 35 H 0.07 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -69.17 319.95 0.65 -68.52 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -0.24 Total: 22.64 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 3.67 Total: -28.38 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -3.02 Total: -85.23 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.49 Total: -28.43 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.29 Total: 4.00 kcal Total: -69.17 0.65 -68.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608177939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.413 kcal (2) G-P(sol) polarization free energy of solvation -69.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds