Wall clock time and date at job start Tue Mar 31 2020 05:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47321 * 240.00113 * 3 2 1 5 5 H 1.48509 * 109.46980 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47106 * 120.00071 * 3 2 1 7 7 C 1.37871 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00182 * 174.07291 * 7 2 1 9 9 C 1.50704 * 119.99817 * 354.06991 * 7 2 1 10 10 C 1.53002 * 115.55012 * 295.02015 * 9 7 2 11 11 N 1.46902 * 109.47192 * 279.76619 * 10 9 7 12 12 C 1.46895 * 110.99867 * 182.94037 * 11 10 9 13 13 H 1.09005 * 109.47302 * 32.98956 * 12 11 10 14 14 C 1.50710 * 109.47027 * 272.98998 * 12 11 10 15 15 O 1.20822 * 119.99987 * 0.02562 * 14 12 11 16 16 O 1.34231 * 119.99596 * 179.97438 * 14 12 11 17 17 C 1.50700 * 109.47234 * 152.99021 * 12 11 10 18 18 C 1.38423 * 122.54083 * 224.27751 * 17 12 11 19 19 C 1.33388 * 114.91999 * 180.22183 * 18 17 12 20 20 S 1.75883 * 109.59494 * 359.64286 * 19 18 17 21 21 C 1.33386 * 122.53722 * 44.25415 * 17 12 11 22 22 C 1.52994 * 117.51978 * 80.72673 * 9 7 2 23 23 C 1.52993 * 60.00363 * 107.47703 * 22 9 7 24 24 H 0.97006 * 120.00507 * 5.02508 * 1 2 3 25 25 H 1.08998 * 109.46870 * 159.77163 * 10 9 7 26 26 H 1.08994 * 109.46754 * 39.76779 * 10 9 7 27 27 H 1.00892 * 111.00124 * 306.89796 * 11 10 9 28 28 H 0.96704 * 116.99534 * 179.97438 * 16 14 12 29 29 H 1.08000 * 122.53503 * 359.95965 * 18 17 12 30 30 H 1.08005 * 125.19856 * 179.75585 * 19 18 17 31 31 H 1.08000 * 125.20950 * 359.97438 * 21 17 12 32 32 H 1.09001 * 117.50163 * 214.97240 * 22 9 7 33 33 H 1.09005 * 117.50130 * 359.97438 * 22 9 7 34 34 H 1.08997 * 117.50345 * 252.50697 * 23 22 9 35 35 H 1.09007 * 117.51676 * 107.47772 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0802 -1.1965 -0.0971 9 6 1.2570 -2.4957 0.1337 10 6 0.5374 -2.7089 1.4670 11 7 1.5033 -3.1584 2.4784 12 6 0.8350 -3.4407 3.7557 13 1 -0.1681 -3.8220 3.5646 14 6 0.7446 -2.1733 4.5662 15 8 1.1907 -1.1408 4.1248 16 8 0.1676 -2.1914 5.7781 17 6 1.6266 -4.4703 4.5201 18 6 1.0302 -5.5416 5.1626 19 6 1.8740 -6.3571 5.7969 20 16 3.5221 -5.7801 5.5868 21 6 2.9551 -4.4187 4.6283 22 6 0.5977 -3.0652 -1.1239 23 6 1.8532 -3.7266 -0.5521 24 1 -0.4851 0.8368 -0.0736 25 1 -0.2383 -3.4647 1.3443 26 1 0.0838 -1.7716 1.7889 27 1 2.0183 -3.9631 2.1542 28 1 0.1334 -1.3540 6.2605 29 1 -0.0377 -5.7024 5.1547 30 1 1.5888 -7.2381 6.3528 31 1 3.5862 -3.6579 4.1932 32 1 -0.3488 -3.5918 -1.0016 33 1 0.7041 -2.4983 -2.0488 34 1 2.7858 -3.5949 -1.1006 35 1 1.7331 -4.6883 -0.0531 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610620652.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:47 Heat of formation + Delta-G solvation = -19.685832 kcal Electronic energy + Delta-G solvation = -19962.789341 eV Core-core repulsion = 16860.781083 eV Total energy + Delta-G solvation = -3102.008258 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06787 -38.16387 -36.91862 -35.63968 -33.96468 -31.85393 -29.80317 -27.59276 -25.54662 -24.00588 -23.53614 -21.20696 -20.55890 -19.22588 -18.74510 -17.77712 -17.53451 -16.37323 -16.06658 -15.36046 -14.81034 -14.51210 -14.22780 -13.83844 -13.38880 -13.26649 -12.93176 -12.81450 -12.53979 -12.23872 -12.02020 -11.46621 -11.21470 -11.02575 -10.81047 -10.76101 -10.61164 -10.41400 -10.18666 -10.09443 -9.37439 -8.86418 -8.81594 -8.44513 -8.44237 -8.03301 -7.73994 -5.89597 -3.91093 0.98237 1.62100 1.93802 2.53290 2.81187 3.35329 3.42715 3.46683 3.52990 4.54597 4.65132 4.94251 5.05139 5.26863 5.33767 5.41052 5.54719 5.66942 5.70830 5.95469 6.13056 6.29885 6.32585 6.40358 6.46815 6.62702 6.71123 6.87438 6.90363 7.09229 7.41029 7.63535 7.76452 8.02993 8.04375 8.42288 8.56531 9.04788 9.72005 11.19626 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.005464 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.726605 B = 5123.126870 C = 5640.722927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.474 4.474 8 H 0.057 0.943 9 C 0.061 3.939 10 C 0.104 3.896 11 N -0.650 5.650 12 C 0.164 3.836 13 H 0.082 0.918 14 C 0.473 3.527 15 O -0.466 6.466 16 O -0.527 6.527 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.219 4.219 20 S 0.092 5.908 21 C -0.176 4.176 22 C -0.176 4.176 23 C -0.212 4.212 24 H 0.258 0.742 25 H -0.001 1.001 26 H 0.094 0.906 27 H 0.346 0.654 28 H 0.402 0.598 29 H 0.142 0.858 30 H 0.164 0.836 31 H 0.175 0.825 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.212 -11.791 12.181 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.512 4.512 8 H 0.075 0.925 9 C 0.060 3.940 10 C -0.023 4.023 11 N -0.284 5.284 12 C 0.049 3.951 13 H 0.099 0.901 14 C 0.310 3.690 15 O -0.349 6.349 16 O -0.339 6.339 17 C -0.123 4.123 18 C -0.146 4.146 19 C -0.354 4.354 20 S 0.355 5.645 21 C -0.312 4.312 22 C -0.214 4.214 23 C -0.249 4.249 24 H 0.068 0.932 25 H 0.017 0.983 26 H 0.112 0.888 27 H 0.167 0.833 28 H 0.260 0.740 29 H 0.160 0.840 30 H 0.181 0.819 31 H 0.192 0.808 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.818 -11.602 12.557 17.327 hybrid contribution -1.513 1.144 -0.416 1.942 sum 1.305 -10.458 12.141 16.077 Atomic orbital electron populations 1.69925 1.05894 1.26623 1.49929 1.24865 0.94733 0.98728 0.94510 0.86689 0.79692 0.83291 0.78474 1.20608 1.21550 1.20030 1.20290 0.92609 0.88570 1.49697 0.92486 1.18772 0.96265 0.91352 0.87594 1.21724 0.90554 0.98803 0.91243 1.59983 1.28116 1.39330 1.00978 1.19441 0.97765 0.87216 0.90633 0.90066 1.23404 0.74779 0.91366 0.79421 1.90814 1.41987 1.32871 1.69191 1.84519 1.75035 1.42531 1.31769 1.18640 0.93294 0.97573 1.02800 1.20031 1.01188 0.94434 0.98922 1.25499 0.95634 1.05723 1.08547 1.84232 1.08556 1.21143 1.50524 1.25684 0.98435 1.02723 1.04401 1.22754 0.93450 1.04124 1.01100 1.22851 0.97502 0.96951 1.07614 0.93200 0.98259 0.88777 0.83340 0.73982 0.84048 0.81881 0.80757 0.92076 0.90166 0.90451 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 12.41 55.43 0.69 -25.07 16 2 C 0.07 2.10 5.28 -17.82 -0.09 2.00 16 3 Si 0.89 22.43 29.54 -169.99 -5.02 17.40 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.27 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.47 -13.23 8.84 -34.44 -0.30 -13.54 16 8 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 9 C 0.06 1.50 1.49 -155.66 -0.23 1.27 16 10 C 0.10 2.38 5.25 -3.82 -0.02 2.36 16 11 N -0.65 -12.69 5.57 -109.18 -0.61 -13.30 16 12 C 0.16 2.70 2.82 -70.01 -0.20 2.50 16 13 H 0.08 1.25 7.65 -51.93 -0.40 0.86 16 14 C 0.47 8.47 7.55 36.01 0.27 8.74 16 15 O -0.47 -10.55 16.87 -18.75 -0.32 -10.87 16 16 O -0.53 -7.33 13.34 -39.26 -0.52 -7.86 16 17 C -0.11 -1.53 4.48 -106.25 -0.48 -2.00 16 18 C -0.12 -1.34 9.94 -41.21 -0.41 -1.75 16 19 C -0.22 -2.23 11.23 29.04 0.33 -1.90 16 20 S 0.09 0.99 23.34 -107.50 -2.51 -1.51 16 21 C -0.18 -2.38 10.32 29.04 0.30 -2.08 16 22 C -0.18 -4.07 9.88 -26.74 -0.26 -4.34 16 23 C -0.21 -4.50 9.46 -26.73 -0.25 -4.76 16 24 H 0.26 7.27 8.32 -40.82 -0.34 6.93 16 25 H 0.00 -0.01 7.79 -51.93 -0.40 -0.42 16 26 H 0.09 2.51 6.87 -51.93 -0.36 2.16 16 27 H 0.35 6.22 7.44 -39.30 -0.29 5.93 16 28 H 0.40 3.99 9.10 45.56 0.41 4.40 16 29 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 31 H 0.18 2.50 8.06 -52.49 -0.42 2.08 16 32 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 33 H 0.08 1.95 8.14 -51.93 -0.42 1.52 16 34 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.06 1.16 8.00 -51.93 -0.42 0.74 16 LS Contribution 320.46 15.07 4.83 4.83 Total: -1.00 -32.17 320.46 -8.35 -40.52 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -3.53 Total: 9.34 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -1.35 Total: -13.49 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.08 Total: -38.37 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.84 Total: -18.72 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.51 Total: -1.51 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.17 -8.35 -40.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610620652.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.832 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds