Wall clock time and date at job start Tue Mar 31 2020 05:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00631 * 2 1 4 4 C 1.52997 * 109.47260 * 270.00245 * 3 2 1 5 5 O 1.42900 * 109.47087 * 65.00036 * 4 3 2 6 6 C 1.34777 * 119.99490 * 180.02562 * 2 1 3 7 7 O 1.21559 * 120.00120 * 174.64920 * 6 2 1 8 8 C 1.47867 * 120.00335 * 354.64544 * 6 2 1 9 9 C 1.39673 * 120.09631 * 329.42207 * 8 6 2 10 10 C 1.38041 * 120.03359 * 180.02562 * 9 8 6 11 11 C 1.38184 * 120.24502 * 359.67129 * 10 9 8 12 12 C 1.39181 * 120.20064 * 0.60574 * 11 10 9 13 13 S 1.76193 * 120.01801 * 179.69523 * 12 11 10 14 14 C 1.76205 * 99.99892 * 264.82762 * 13 12 11 15 15 H 1.07993 * 119.99887 * 5.02458 * 14 13 12 16 16 C 1.38729 * 120.00153 * 185.02567 * 14 13 12 17 17 N 1.31623 * 120.00117 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99815 * 0.02562 * 16 14 13 19 19 H 1.48491 * 109.47226 * 89.99972 * 18 16 14 20 20 H 1.48498 * 109.46831 * 210.00291 * 18 16 14 21 21 H 1.48502 * 109.46856 * 329.99772 * 18 16 14 22 22 C 1.38879 * 119.95624 * 359.42167 * 12 11 10 23 23 H 1.09000 * 109.47372 * 271.86489 * 1 2 3 24 24 H 1.09004 * 109.47050 * 31.86121 * 1 2 3 25 25 H 1.08996 * 109.47637 * 151.86362 * 1 2 3 26 26 H 1.09008 * 109.46930 * 30.00124 * 3 2 1 27 27 H 1.09001 * 109.47234 * 150.00036 * 3 2 1 28 28 H 1.09000 * 109.46906 * 184.99443 * 4 3 2 29 29 H 1.08994 * 109.46997 * 304.99615 * 4 3 2 30 30 H 0.96702 * 113.99870 * 179.97438 * 5 4 3 31 31 H 1.07994 * 119.98652 * 0.02562 * 9 8 6 32 32 H 1.08000 * 119.87521 * 180.02562 * 10 9 8 33 33 H 1.07998 * 119.89793 * 180.29752 * 11 10 9 34 34 H 0.97001 * 119.99491 * 180.02562 * 17 16 14 35 35 H 1.07994 * 120.11840 * 180.25325 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 8 1.2061 1.9936 -2.0813 6 6 2.1388 -1.1673 -0.0005 7 8 3.3504 -1.1696 -0.0987 8 6 1.4042 -2.4451 0.1184 9 6 0.2070 -2.5006 0.8356 10 6 -0.4774 -3.6943 0.9462 11 6 0.0138 -4.8367 0.3436 12 6 1.2088 -4.7940 -0.3686 13 16 1.8348 -6.2553 -1.1283 14 6 2.9400 -6.8046 0.1294 15 1 2.9851 -6.2831 1.0740 16 6 3.7521 -7.9069 -0.0938 17 7 4.5773 -8.3175 0.8458 18 14 3.6745 -8.8086 -1.7281 19 1 4.6522 -8.2088 -2.6712 20 1 4.0035 -10.2415 -1.5189 21 1 2.3061 -8.6922 -2.2931 22 6 1.9045 -3.5977 -0.4848 23 1 -0.3634 0.0334 1.0271 24 1 -0.3633 0.8729 -0.5425 25 1 -0.3634 -0.9062 -0.4846 26 1 1.6086 2.0283 0.5139 27 1 3.1500 1.1382 0.5138 28 1 3.0734 2.6063 -1.4437 29 1 2.9643 0.9130 -1.9815 30 1 1.2917 2.2805 -3.0008 31 1 -0.1836 -1.6092 1.3038 32 1 -1.4031 -3.7342 1.5010 33 1 -0.5287 -5.7665 0.4297 34 1 5.1454 -9.0881 0.6895 35 1 2.8299 -3.5607 -1.0403 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131867505.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:43 Heat of formation + Delta-G solvation = -48.886655 kcal Electronic energy + Delta-G solvation = -19211.412398 eV Core-core repulsion = 16108.137897 eV Total energy + Delta-G solvation = -3103.274501 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.29328 -38.08107 -37.05905 -35.34110 -32.48250 -31.57500 -30.66917 -29.37994 -26.78402 -25.66140 -24.10982 -22.50865 -22.05661 -19.67441 -18.15358 -17.64474 -16.90520 -16.48744 -16.11394 -15.76341 -15.11145 -14.91545 -14.46649 -14.24602 -13.81828 -13.48575 -13.20032 -13.09777 -12.88563 -12.64890 -12.38338 -12.29598 -11.67313 -11.53809 -11.26336 -11.15341 -11.09113 -10.59265 -10.35162 -9.92102 -9.74873 -9.14780 -9.06374 -8.79495 -8.58280 -8.11274 -7.12277 -6.31101 -4.06683 1.19348 1.61685 2.78556 2.97664 3.00049 3.27623 3.38953 3.51389 3.98545 4.05548 4.27199 4.57329 4.88765 4.90694 4.91125 5.02694 5.07452 5.08521 5.18988 5.28907 5.38736 5.49324 5.61479 5.68209 5.72484 5.81885 5.94650 6.21627 6.40162 6.55388 6.61585 6.84722 7.13712 7.29194 7.36718 7.93148 8.21549 8.47585 9.12629 10.78453 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025476 B = 0.004211 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.821432 B = 6647.079926 C = 7065.158124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.610 5.610 3 C 0.119 3.881 4 C 0.058 3.942 5 O -0.572 6.572 6 C 0.563 3.437 7 O -0.534 6.534 8 C -0.150 4.150 9 C -0.095 4.095 10 C -0.141 4.141 11 C -0.054 4.054 12 C -0.085 4.085 13 S -0.114 6.114 14 C -0.509 4.509 15 H 0.091 0.909 16 C 0.095 3.905 17 N -0.876 5.876 18 Si 0.858 3.142 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.239 1.239 22 C -0.020 4.020 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.378 0.622 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.272 0.728 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.532 18.674 -3.088 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.344 5.344 3 C -0.004 4.004 4 C -0.021 4.021 5 O -0.378 6.378 6 C 0.353 3.647 7 O -0.411 6.411 8 C -0.154 4.154 9 C -0.113 4.113 10 C -0.161 4.161 11 C -0.074 4.074 12 C -0.196 4.196 13 S 0.120 5.880 14 C -0.656 4.656 15 H 0.109 0.891 16 C -0.114 4.114 17 N -0.512 5.512 18 Si 0.682 3.318 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.163 1.163 22 C -0.042 4.042 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.225 0.775 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.082 0.918 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.176 17.844 -3.527 20.842 hybrid contribution 0.711 0.256 0.135 0.768 sum -9.465 18.100 -3.392 20.705 Atomic orbital electron populations 1.22189 0.79199 1.04184 1.01025 1.47612 1.07290 1.05239 1.74230 1.21500 0.98555 0.85058 0.95255 1.22657 0.85797 0.99122 0.94497 1.86444 1.30832 1.90272 1.30215 1.18557 0.86996 0.83578 0.75605 1.90779 1.13833 1.87192 1.49282 1.19768 0.97304 0.93505 1.04867 1.21677 0.93503 0.98589 0.97576 1.21072 1.00746 0.92632 1.01617 1.21879 0.94616 0.98253 0.92700 1.22153 0.97235 0.98367 1.01827 1.83023 1.54832 1.20945 1.29168 1.22256 1.24495 1.17883 1.00938 0.89061 1.24742 0.93491 0.95958 0.97167 1.69930 1.22633 1.25400 1.33238 0.86737 0.81196 0.79855 0.83989 1.19069 1.19783 1.16337 1.21812 0.97775 0.89971 0.94640 0.92728 0.90383 0.90083 0.89838 0.88449 0.92815 0.92838 0.77543 0.85000 0.85642 0.84990 0.91822 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 8.60 59.85 0.51 1.26 16 2 N -0.61 -7.70 2.84 -182.69 -0.52 -8.21 16 3 C 0.12 1.24 5.78 -4.05 -0.02 1.22 16 4 C 0.06 0.55 7.39 37.16 0.27 0.83 16 5 O -0.57 -5.13 12.45 -35.23 -0.44 -5.57 16 6 C 0.56 9.44 7.42 -12.32 -0.09 9.35 16 7 O -0.53 -10.78 16.36 5.31 0.09 -10.70 16 8 C -0.15 -2.58 5.31 -105.00 -0.56 -3.14 16 9 C -0.09 -1.33 7.60 -39.12 -0.30 -1.63 16 10 C -0.14 -2.01 10.02 -39.67 -0.40 -2.41 16 11 C -0.05 -0.95 9.79 -39.25 -0.38 -1.33 16 12 C -0.09 -1.80 5.45 -38.99 -0.21 -2.01 16 13 S -0.11 -2.78 19.38 -107.50 -2.08 -4.87 16 14 C -0.51 -14.83 10.01 30.91 0.31 -14.52 16 15 H 0.09 2.91 8.02 -52.49 -0.42 2.48 16 16 C 0.10 2.78 5.50 -17.46 -0.10 2.68 16 17 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16 18 Si 0.86 21.17 27.74 -169.99 -4.71 16.45 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 22 C -0.02 -0.41 9.35 -38.92 -0.36 -0.78 16 23 H 0.05 0.43 6.82 -51.93 -0.35 0.07 16 24 H 0.08 0.69 7.08 -51.93 -0.37 0.33 16 25 H 0.08 0.84 5.76 -51.93 -0.30 0.54 16 26 H 0.08 0.69 8.07 -51.92 -0.42 0.27 16 27 H 0.10 1.08 7.50 -51.93 -0.39 0.69 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.38 1.89 9.12 45.56 0.42 2.30 16 31 H 0.13 1.42 4.93 -52.49 -0.26 1.16 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 34 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.14 2.94 7.93 -52.49 -0.42 2.52 16 LS Contribution 311.84 15.07 4.70 4.70 Total: -1.00 -34.65 311.84 -6.88 -41.52 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.36 Total: 3.00 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.32 Total: -10.49 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.26 Total: -34.06 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.35 Total: -16.26 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.45 kcal Atomic # 16 Polarization: -2.78 SS G_CDS: -2.08 Total: -4.87 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.65 -6.88 -41.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131867505.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.364 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds