Wall clock time and date at job start Tue Mar 31 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00035 * 2 1 4 4 H 1.48504 * 109.47036 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46988 * 299.99357 * 3 2 1 6 6 H 1.48493 * 109.47358 * 59.99784 * 3 2 1 7 7 C 1.38820 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99767 * 166.22296 * 7 2 1 9 9 N 1.36935 * 119.99854 * 346.22716 * 7 2 1 10 10 C 1.46925 * 120.63208 * 329.94423 * 9 7 2 11 11 C 1.53190 * 108.77716 * 233.88584 * 10 9 7 12 12 C 1.53042 * 109.31296 * 305.36764 * 11 10 9 13 13 C 1.53035 * 109.54079 * 61.36106 * 12 11 10 14 14 H 1.09006 * 109.49286 * 58.58808 * 13 12 11 15 15 O 1.42898 * 109.50146 * 178.68381 * 13 12 11 16 16 C 1.35926 * 117.00076 * 205.81511 * 15 13 12 17 17 C 1.38705 * 120.06117 * 354.69901 * 16 15 13 18 18 C 1.38152 * 119.95493 * 179.70029 * 17 16 15 19 19 C 1.38277 * 120.07912 * 0.57192 * 18 17 16 20 20 C 1.38250 * 120.11578 * 359.72420 * 19 18 17 21 21 C 1.38255 * 120.04465 * 359.97438 * 20 19 18 22 22 Cl 1.73598 * 120.03880 * 180.02562 * 21 20 19 23 23 C 1.46924 * 120.62666 * 150.22836 * 9 7 2 24 24 H 0.96998 * 120.00089 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.58370 * 353.67736 * 10 9 7 26 26 H 1.09003 * 109.58469 * 114.10003 * 10 9 7 27 27 H 1.09002 * 109.49907 * 185.41695 * 11 10 9 28 28 H 1.09002 * 109.52280 * 65.33448 * 11 10 9 29 29 H 1.09000 * 109.45864 * 301.34429 * 12 11 10 30 30 H 1.08992 * 109.44920 * 181.38011 * 12 11 10 31 31 H 1.08000 * 120.02107 * 0.02562 * 17 16 15 32 32 H 1.07997 * 119.96301 * 180.29733 * 18 17 16 33 33 H 1.08001 * 119.94218 * 179.74500 * 19 18 17 34 34 H 1.07997 * 119.97741 * 179.97438 * 20 19 18 35 35 H 1.08998 * 109.58819 * 245.89828 * 23 9 7 36 36 H 1.09000 * 109.59169 * 6.18543 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0670 -1.2157 -0.2222 9 7 1.3551 -2.3709 0.2834 10 6 0.1934 -2.3791 1.1830 11 6 0.4384 -3.4035 2.2954 12 6 0.7587 -4.7630 1.6699 13 6 2.0311 -4.6517 0.8270 14 1 2.8557 -4.3155 1.4557 15 8 2.3464 -5.9286 0.2682 16 6 3.6503 -6.1647 -0.0345 17 6 4.5888 -5.1519 0.0977 18 6 5.9145 -5.3961 -0.2046 19 6 6.3049 -6.6456 -0.6502 20 6 5.3711 -7.6556 -0.7890 21 6 4.0442 -7.4184 -0.4819 22 17 2.8719 -8.6870 -0.6556 23 6 1.8042 -3.6414 -0.3021 24 1 -0.4850 0.8400 -0.0004 25 1 0.0628 -1.3892 1.6200 26 1 -0.7004 -2.6545 0.6231 27 1 -0.4547 -3.4891 2.9143 28 1 1.2777 -3.0793 2.9107 29 1 -0.0709 -5.0754 1.0356 30 1 0.9093 -5.4992 2.4594 31 1 4.2842 -4.1746 0.4419 32 1 6.6461 -4.6090 -0.0971 33 1 7.3412 -6.8329 -0.8899 34 1 5.6785 -8.6304 -1.1376 35 1 1.0418 -4.0197 -0.9830 36 1 2.7351 -3.4840 -0.8469 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133091787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:15 Heat of formation + Delta-G solvation = -1.969167 kcal Electronic energy + Delta-G solvation = -19952.422324 eV Core-core repulsion = 16849.138611 eV Total energy + Delta-G solvation = -3103.283713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.19947 -38.02167 -36.32798 -36.23400 -32.95454 -30.90142 -30.51058 -30.09413 -28.71338 -25.36825 -23.42887 -22.65717 -21.97751 -21.32347 -19.28872 -18.17782 -16.87020 -16.12259 -15.90267 -15.19164 -14.88351 -14.64781 -14.11188 -13.83487 -13.69125 -13.36043 -13.11461 -12.52155 -12.40160 -12.04906 -11.89962 -11.85328 -11.38490 -11.19264 -11.09926 -10.90607 -10.71396 -10.45867 -10.29431 -10.21923 -9.99005 -9.87161 -9.53164 -8.84961 -8.56910 -8.05418 -6.74834 -5.86852 -3.34008 1.16907 1.38268 2.27608 3.31938 3.34154 3.40592 3.42149 3.67019 4.42374 4.79702 4.93783 5.11343 5.21528 5.25727 5.32757 5.45068 5.45153 5.54022 5.67469 5.76264 5.88050 6.03470 6.13837 6.21113 6.26540 6.43821 6.46836 6.55641 6.62822 6.67454 6.72658 6.79187 7.29082 7.59006 7.59947 7.71802 8.37040 9.12260 9.73215 10.30344 11.21606 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.004933 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.801124 B = 5674.371188 C = 6566.757247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.586 5.586 10 C 0.166 3.834 11 C -0.140 4.140 12 C -0.102 4.102 13 C 0.065 3.935 14 H 0.072 0.928 15 O -0.302 6.302 16 C 0.154 3.846 17 C -0.197 4.197 18 C -0.074 4.074 19 C -0.157 4.157 20 C -0.077 4.077 21 C -0.078 4.078 22 Cl -0.066 7.066 23 C 0.128 3.872 24 H 0.255 0.745 25 H 0.091 0.909 26 H 0.022 0.978 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.146 0.854 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.030 0.970 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.555 -13.172 1.641 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.140 4.140 13 C 0.008 3.992 14 H 0.090 0.910 15 O -0.214 6.214 16 C 0.106 3.894 17 C -0.216 4.216 18 C -0.092 4.092 19 C -0.176 4.176 20 C -0.096 4.096 21 C -0.105 4.105 22 Cl -0.037 7.037 23 C 0.001 3.999 24 H 0.065 0.935 25 H 0.109 0.891 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.163 0.837 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.047 0.953 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.147 -13.248 1.592 15.634 hybrid contribution 0.380 0.938 -0.032 1.012 sum 8.527 -12.310 1.560 15.056 Atomic orbital electron populations 1.70012 1.05300 1.25569 1.53565 1.25118 0.95362 0.98470 1.00292 0.86191 0.79300 0.83711 0.77371 1.20194 1.21570 1.21442 1.19197 0.91584 0.84068 1.43876 0.91634 1.43973 1.34092 1.01746 1.51161 1.20886 0.88457 0.97957 0.88625 1.22219 1.00578 0.95162 0.99928 1.21462 0.96007 0.98420 0.98098 1.23377 0.98154 0.80900 0.96818 0.91048 1.86159 1.21039 1.37581 1.76572 1.18768 0.84797 0.91910 0.93909 1.21524 0.93588 0.99911 1.06578 1.21077 0.95358 0.96905 0.95857 1.20949 0.99456 0.93197 1.03994 1.20838 0.90116 1.00045 0.98620 1.20197 0.91064 0.88648 1.10612 1.98346 1.58669 1.50236 1.96449 1.21353 0.98846 0.87140 0.92571 0.93513 0.89075 0.96009 0.92214 0.92492 0.91488 0.92687 0.83660 0.85309 0.85363 0.84823 0.95252 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.56 11.13 55.49 0.62 -24.94 16 2 C 0.01 0.18 4.98 -17.43 -0.09 0.09 16 3 Si 0.90 21.14 29.58 -169.99 -5.03 16.11 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.26 -6.87 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.71 7.87 -52.49 -0.41 1.29 16 9 N -0.59 -14.32 2.99 -172.32 -0.51 -14.84 16 10 C 0.17 3.86 5.28 -3.71 -0.02 3.84 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 12 C -0.10 -1.77 5.54 -26.69 -0.15 -1.92 16 13 C 0.06 1.17 2.25 -26.61 -0.06 1.11 16 14 H 0.07 1.28 6.25 -51.93 -0.32 0.95 16 15 O -0.30 -5.28 9.26 -19.51 -0.18 -5.46 16 16 C 0.15 2.45 6.61 -39.19 -0.26 2.19 16 17 C -0.20 -2.91 8.36 -39.44 -0.33 -3.24 16 18 C -0.07 -0.90 10.04 -39.60 -0.40 -1.29 16 19 C -0.16 -1.71 10.04 -39.56 -0.40 -2.11 16 20 C -0.08 -0.91 9.83 -39.57 -0.39 -1.30 16 21 C -0.08 -1.12 6.33 -39.36 -0.25 -1.37 16 22 Cl -0.07 -0.91 28.50 -51.86 -1.48 -2.39 16 23 C 0.13 2.71 5.84 -3.71 -0.02 2.69 16 24 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.09 2.35 6.09 -51.93 -0.32 2.04 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.15 2.28 5.41 -52.49 -0.28 1.99 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.22 6.80 -51.93 -0.35 0.87 16 LS Contribution 307.28 15.07 4.63 4.63 Total: -1.00 -28.59 307.28 -9.25 -37.83 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.63 Total: 0.11 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -2.66 Total: -11.05 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.10 Total: -39.78 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.18 Total: -5.46 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.48 Total: -2.39 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.59 -9.25 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133091787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.865 kcal (2) G-P(sol) polarization free energy of solvation -28.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds