Wall clock time and date at job start Tue Mar 31 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00035 * 2 1 4 4 H 1.48504 * 109.47036 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46988 * 299.99357 * 3 2 1 6 6 H 1.48493 * 109.47358 * 59.99784 * 3 2 1 7 7 C 1.38820 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99767 * 166.22296 * 7 2 1 9 9 N 1.36935 * 119.99854 * 346.22716 * 7 2 1 10 10 C 1.46925 * 120.63208 * 329.94423 * 9 7 2 11 11 C 1.53190 * 108.77716 * 233.88584 * 10 9 7 12 12 C 1.53042 * 109.31296 * 305.36764 * 11 10 9 13 13 C 1.53035 * 109.54079 * 61.36106 * 12 11 10 14 14 H 1.09006 * 109.49286 * 58.58808 * 13 12 11 15 15 O 1.42898 * 109.50146 * 178.68381 * 13 12 11 16 16 C 1.35926 * 117.00076 * 205.81511 * 15 13 12 17 17 C 1.38705 * 120.06117 * 354.69901 * 16 15 13 18 18 C 1.38152 * 119.95493 * 179.70029 * 17 16 15 19 19 C 1.38277 * 120.07912 * 0.57192 * 18 17 16 20 20 C 1.38250 * 120.11578 * 359.72420 * 19 18 17 21 21 C 1.38255 * 120.04465 * 359.97438 * 20 19 18 22 22 Cl 1.73598 * 120.03880 * 180.02562 * 21 20 19 23 23 C 1.46924 * 120.62666 * 150.22836 * 9 7 2 24 24 H 0.96998 * 120.00089 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.58370 * 353.67736 * 10 9 7 26 26 H 1.09003 * 109.58469 * 114.10003 * 10 9 7 27 27 H 1.09002 * 109.49907 * 185.41695 * 11 10 9 28 28 H 1.09002 * 109.52280 * 65.33448 * 11 10 9 29 29 H 1.09000 * 109.45864 * 301.34429 * 12 11 10 30 30 H 1.08992 * 109.44920 * 181.38011 * 12 11 10 31 31 H 1.08000 * 120.02107 * 0.02562 * 17 16 15 32 32 H 1.07997 * 119.96301 * 180.29733 * 18 17 16 33 33 H 1.08001 * 119.94218 * 179.74500 * 19 18 17 34 34 H 1.07997 * 119.97741 * 179.97438 * 20 19 18 35 35 H 1.08998 * 109.58819 * 245.89828 * 23 9 7 36 36 H 1.09000 * 109.59169 * 6.18543 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0670 -1.2157 -0.2222 9 7 1.3551 -2.3709 0.2834 10 6 0.1934 -2.3791 1.1830 11 6 0.4384 -3.4035 2.2954 12 6 0.7587 -4.7630 1.6699 13 6 2.0311 -4.6517 0.8270 14 1 2.8557 -4.3155 1.4557 15 8 2.3464 -5.9286 0.2682 16 6 3.6503 -6.1647 -0.0345 17 6 4.5888 -5.1519 0.0977 18 6 5.9145 -5.3961 -0.2046 19 6 6.3049 -6.6456 -0.6502 20 6 5.3711 -7.6556 -0.7890 21 6 4.0442 -7.4184 -0.4819 22 17 2.8719 -8.6870 -0.6556 23 6 1.8042 -3.6414 -0.3021 24 1 -0.4850 0.8400 -0.0004 25 1 0.0628 -1.3892 1.6200 26 1 -0.7004 -2.6545 0.6231 27 1 -0.4547 -3.4891 2.9143 28 1 1.2777 -3.0793 2.9107 29 1 -0.0709 -5.0754 1.0356 30 1 0.9093 -5.4992 2.4594 31 1 4.2842 -4.1746 0.4419 32 1 6.6461 -4.6090 -0.0971 33 1 7.3412 -6.8329 -0.8899 34 1 5.6785 -8.6304 -1.1376 35 1 1.0418 -4.0197 -0.9830 36 1 2.7351 -3.4840 -0.8469 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133091787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:15 Heat of formation + Delta-G solvation = -16.641963 kcal Electronic energy + Delta-G solvation = -19953.058584 eV Core-core repulsion = 16849.138611 eV Total energy + Delta-G solvation = -3103.919973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41173 -39.33931 -37.81797 -37.29885 -34.76790 -32.44744 -31.87906 -31.34461 -30.11337 -27.29109 -24.73927 -24.06187 -23.38135 -22.69595 -20.88696 -19.39768 -18.67126 -17.39273 -17.03159 -16.80370 -16.53638 -15.73229 -15.65264 -15.27796 -14.92755 -14.77590 -14.68441 -14.25545 -13.75769 -13.54770 -13.31389 -12.99380 -12.86213 -12.78460 -12.44564 -12.33472 -12.17201 -11.98617 -11.89829 -11.84206 -11.60457 -11.54683 -11.18298 -10.59275 -9.86453 -9.18925 -8.71680 -7.91384 -5.42058 0.16666 0.35884 1.22105 1.46218 1.47682 1.58161 2.08718 2.49965 2.66977 3.25165 3.62885 3.75019 3.79820 3.93358 4.02020 4.13672 4.18527 4.34935 4.36441 4.43401 4.58417 4.66519 4.81291 4.86986 4.98505 5.01915 5.08266 5.17077 5.19816 5.30459 5.46699 5.48365 5.60608 5.70536 5.75402 6.29174 6.39170 7.09884 7.76231 8.29892 9.15341 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.004933 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.801124 B = 5674.371188 C = 6566.757247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.045 4.045 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.287 1.287 7 C -0.267 4.267 8 H 0.068 0.932 9 N -0.602 5.602 10 C 0.170 3.830 11 C -0.126 4.126 12 C -0.098 4.098 13 C 0.081 3.919 14 H 0.075 0.925 15 O -0.312 6.312 16 C 0.122 3.878 17 C -0.212 4.212 18 C -0.075 4.075 19 C -0.142 4.142 20 C -0.074 4.074 21 C -0.091 4.091 22 Cl -0.069 7.069 23 C 0.132 3.868 24 H 0.252 0.748 25 H 0.061 0.939 26 H -0.002 1.002 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.010 0.990 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.020 -14.385 2.035 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.241 4.241 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.214 1.214 7 C -0.397 4.397 8 H 0.086 0.914 9 N -0.327 5.327 10 C 0.045 3.955 11 C -0.165 4.165 12 C -0.136 4.136 13 C 0.024 3.976 14 H 0.093 0.907 15 O -0.225 6.225 16 C 0.075 3.925 17 C -0.231 4.231 18 C -0.093 4.093 19 C -0.160 4.160 20 C -0.092 4.092 21 C -0.118 4.118 22 Cl -0.040 7.040 23 C 0.006 3.994 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.016 0.984 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.147 0.853 32 H 0.170 0.830 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.028 0.972 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.635 -14.494 1.988 18.087 hybrid contribution -0.291 1.228 -0.240 1.284 sum 10.344 -13.266 1.747 16.913 Atomic orbital electron populations 1.70171 1.06756 1.26005 1.54992 1.25883 0.96109 1.01582 1.00502 0.85171 0.78666 0.79528 0.76861 1.18858 1.21973 1.21360 1.19523 0.91924 0.85128 1.43154 0.91431 1.44192 1.34230 1.02330 1.51910 1.20738 0.87397 0.97879 0.89491 1.22029 1.01890 0.94226 0.98307 1.21428 0.95357 0.98191 0.98606 1.22973 0.98679 0.80676 0.95278 0.90736 1.86123 1.22542 1.36552 1.77293 1.19051 0.84268 0.93155 0.96023 1.21510 0.94852 0.99040 1.07702 1.21415 0.94567 0.98350 0.94950 1.21411 1.01082 0.91984 1.01558 1.21254 0.88986 1.01608 0.97374 1.20469 0.92130 0.88117 1.11069 1.98341 1.59104 1.50110 1.96483 1.21346 0.97751 0.86776 0.93555 0.93909 0.92023 0.98418 0.89681 0.92164 0.92061 0.89947 0.85317 0.83014 0.81526 0.82024 0.97183 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.64 11.13 21.65 0.24 -54.40 16 2 C -0.04 -2.47 4.98 84.86 0.42 -2.05 16 3 Si 0.97 43.95 29.58 68.60 2.03 45.98 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.27 -14.52 9.58 84.04 0.81 -13.71 16 8 H 0.07 3.56 7.87 -2.91 -0.02 3.53 16 9 N -0.60 -30.26 2.99 -699.10 -2.09 -32.34 16 10 C 0.17 8.14 5.28 86.36 0.46 8.60 16 11 C -0.13 -4.56 6.08 30.67 0.19 -4.37 16 12 C -0.10 -3.31 5.54 30.62 0.17 -3.14 16 13 C 0.08 2.94 2.25 30.67 0.07 3.01 16 14 H 0.07 2.65 6.25 -2.38 -0.01 2.64 16 15 O -0.31 -10.90 9.26 -92.72 -0.86 -11.75 16 16 C 0.12 3.79 6.61 22.52 0.15 3.93 16 17 C -0.21 -6.08 8.36 22.36 0.19 -5.90 16 18 C -0.07 -1.62 10.04 22.26 0.22 -1.40 16 19 C -0.14 -2.52 10.04 22.28 0.22 -2.30 16 20 C -0.07 -1.49 9.83 22.28 0.22 -1.27 16 21 C -0.09 -2.45 6.33 22.41 0.14 -2.31 16 22 Cl -0.07 -1.84 28.50 -2.72 -0.08 -1.92 16 23 C 0.13 5.76 5.84 86.36 0.50 6.26 16 24 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.06 3.30 6.09 -2.39 -0.01 3.29 16 26 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.13 4.06 5.41 -2.91 -0.02 4.04 16 32 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 33 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.05 2.37 6.80 -2.39 -0.02 2.35 16 Total: -1.00 -63.23 307.28 4.08 -59.15 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.08 Total: 9.93 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 3.76 Total: -14.64 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -1.85 Total: -86.74 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -0.86 Total: -11.75 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.08 Total: -1.92 kcal Total: -63.23 4.08 -59.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133091787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.505 kcal (2) G-P(sol) polarization free energy of solvation -63.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds