Wall clock time and date at job start Tue Mar 31 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47318 * 270.00118 * 3 2 1 5 5 H 1.48506 * 109.46807 * 30.00066 * 3 2 1 6 6 H 1.48500 * 109.47226 * 149.99750 * 3 2 1 7 7 C 1.37874 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99999 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00380 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47263 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99676 * 269.99776 * 10 9 7 12 12 C 1.53002 * 109.46893 * 86.43036 * 11 10 9 13 13 F 1.39908 * 109.47119 * 59.99679 * 12 11 10 14 14 F 1.39898 * 109.47137 * 179.97438 * 12 11 10 15 15 F 1.39901 * 109.47223 * 299.99745 * 12 11 10 16 16 C 1.34776 * 119.99770 * 90.00111 * 10 9 7 17 17 O 1.21273 * 120.00226 * 354.55987 * 16 10 9 18 18 C 1.50700 * 119.99591 * 174.56392 * 16 10 9 19 19 H 1.08999 * 110.33236 * 51.51295 * 18 16 10 20 20 C 1.54478 * 110.37398 * 289.26279 * 18 16 10 21 21 C 1.54502 * 104.06506 * 217.19130 * 20 18 16 22 22 C 1.54478 * 104.06523 * 359.97438 * 21 20 18 23 23 O 1.44427 * 110.37206 * 173.88090 * 18 16 10 24 24 H 0.97009 * 120.00119 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47265 * 300.00149 * 9 7 2 26 26 H 1.09002 * 109.47238 * 60.00270 * 9 7 2 27 27 H 1.09007 * 109.46981 * 206.42517 * 11 10 9 28 28 H 1.08994 * 109.47576 * 326.42996 * 11 10 9 29 29 H 1.08998 * 110.51210 * 335.83865 * 20 18 16 30 30 H 1.09003 * 110.51271 * 98.40639 * 20 18 16 31 31 H 1.09004 * 110.51646 * 118.64360 * 21 20 18 32 32 H 1.09002 * 110.51316 * 241.21758 * 21 20 18 33 33 H 1.08997 * 110.37416 * 142.80452 * 22 21 20 34 34 H 1.08996 * 110.37669 * 265.14965 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0013 11 6 4.2435 -3.2672 1.2668 12 6 2.9450 -3.9147 1.7522 13 9 2.4972 -4.8343 0.7976 14 9 3.1777 -4.5760 2.9628 15 9 1.9727 -2.9264 1.9396 16 6 4.2249 -3.2093 -1.1692 17 8 3.9307 -2.6735 -2.2166 18 6 4.8421 -4.5841 -1.1733 19 1 4.2959 -5.2465 -0.5018 20 6 6.3289 -4.5074 -0.7612 21 6 7.0202 -5.5645 -1.6511 22 6 5.8692 -6.1553 -2.4952 23 8 4.8578 -5.1241 -2.5128 24 1 -0.4851 0.8401 -0.0004 25 1 3.8752 -0.6796 -0.8894 26 1 3.8745 -0.6809 0.8905 27 1 5.0010 -4.0374 1.1207 28 1 4.5923 -2.5509 2.0105 29 1 6.7309 -3.5149 -0.9647 30 1 6.4463 -4.7570 0.2933 31 1 7.7640 -5.0946 -2.2946 32 1 7.4817 -6.3378 -1.0370 33 1 6.2116 -6.3676 -3.5079 34 1 5.4813 -7.0601 -2.0273 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159676804.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:12 Heat of formation + Delta-G solvation = -219.920833 kcal Electronic energy + Delta-G solvation = -23936.453552 eV Core-core repulsion = 19841.152841 eV Total energy + Delta-G solvation = -4095.300711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.55819 -47.19044 -46.84259 -40.17279 -38.20560 -35.46173 -32.75068 -32.12596 -30.18870 -29.28331 -27.32871 -24.07264 -23.12515 -22.06433 -21.52584 -19.23217 -18.08615 -17.98414 -17.70852 -16.83188 -16.62031 -16.13552 -15.94048 -14.93835 -14.74731 -14.27370 -14.06126 -13.86454 -13.84378 -13.63040 -13.45450 -13.14824 -13.03035 -12.86642 -12.58194 -12.33264 -12.06125 -11.91488 -11.68229 -11.51848 -11.36911 -10.99201 -10.88470 -10.59430 -10.22039 -9.94305 -9.47711 -9.11697 -8.56472 -8.13386 -6.04531 -4.03204 2.75084 3.15435 3.28744 3.33240 3.35340 3.37696 3.94401 4.22714 4.30167 4.33116 4.40079 4.55318 4.72116 4.75922 4.94919 5.07485 5.13959 5.24396 5.30350 5.33225 5.45643 5.51501 5.63598 5.77156 5.85983 6.41142 6.67684 6.79854 7.01055 7.55266 7.80933 8.44247 8.66774 9.01261 9.52838 11.08612 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.018289 B = 0.007317 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.643603 B = 3825.547167 C = 4687.100543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.075 3.925 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.083 0.917 9 C 0.215 3.785 10 N -0.592 5.592 11 C 0.070 3.930 12 C 0.423 3.577 13 F -0.188 7.188 14 F -0.196 7.196 15 F -0.142 7.142 16 C 0.520 3.480 17 O -0.494 6.494 18 C 0.050 3.950 19 H 0.094 0.906 20 C -0.148 4.148 21 C -0.152 4.152 22 C 0.040 3.960 23 O -0.341 6.341 24 H 0.264 0.736 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.048 -11.257 3.971 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.101 0.899 9 C 0.096 3.904 10 N -0.326 5.326 11 C -0.058 4.058 12 C 0.367 3.633 13 F -0.169 7.169 14 F -0.178 7.178 15 F -0.123 7.123 16 C 0.305 3.695 17 O -0.367 6.367 18 C -0.011 4.011 19 H 0.111 0.889 20 C -0.186 4.186 21 C -0.189 4.189 22 C -0.037 4.037 23 O -0.258 6.258 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.551 -10.746 3.170 18.365 hybrid contribution 0.129 0.635 0.411 0.768 sum 14.681 -10.111 3.581 18.182 Atomic orbital electron populations 1.69890 1.06135 1.26824 1.50235 1.24806 0.94720 0.98630 0.94594 0.86940 0.80147 0.84273 0.78777 1.19983 1.21048 1.19175 1.21353 0.88630 0.95381 1.51164 0.89854 1.19883 0.96606 0.76037 0.97915 1.47815 1.66023 1.16085 1.02666 1.22723 0.92547 0.99869 0.90613 1.21431 0.89669 0.77376 0.74796 1.93139 1.91061 1.68312 1.64423 1.93134 1.94778 1.82425 1.47447 1.93453 1.64610 1.59597 1.94647 1.19994 0.79054 0.86355 0.84067 1.90729 1.48885 1.66364 1.30673 1.23064 0.96544 0.94609 0.86928 0.88860 1.22996 0.93688 1.01341 1.00560 1.22929 0.98875 0.98464 0.98671 1.23490 0.87677 0.91308 1.01268 1.89315 1.57719 1.51754 1.27059 0.92593 0.94007 0.94675 0.87200 0.85959 0.89792 0.89639 0.90328 0.90181 0.88723 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.96 55.43 0.77 -26.83 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 7 C -0.53 -14.83 8.02 -34.44 -0.28 -15.11 16 8 H 0.08 2.61 6.82 -52.48 -0.36 2.25 16 9 C 0.21 5.00 4.11 -5.19 -0.02 4.98 16 10 N -0.59 -11.52 2.40 -175.06 -0.42 -11.94 16 11 C 0.07 1.00 5.23 -4.04 -0.02 0.98 16 12 C 0.42 7.18 3.29 37.16 0.12 7.30 16 13 F -0.19 -3.43 15.28 2.25 0.03 -3.39 16 14 F -0.20 -2.87 17.32 2.25 0.04 -2.83 16 15 F -0.14 -3.09 13.71 2.25 0.03 -3.06 16 16 C 0.52 10.60 6.59 -10.99 -0.07 10.53 16 17 O -0.49 -12.58 16.20 -13.57 -0.22 -12.80 16 18 C 0.05 0.77 2.72 -27.11 -0.07 0.70 16 19 H 0.09 1.33 5.96 -51.93 -0.31 1.02 16 20 C -0.15 -1.59 5.83 -25.17 -0.15 -1.73 16 21 C -0.15 -1.34 7.09 -25.17 -0.18 -1.52 16 22 C 0.04 0.43 7.63 37.93 0.29 0.72 16 23 O -0.34 -5.74 10.92 -54.36 -0.59 -6.33 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.04 1.04 6.93 -51.93 -0.36 0.68 16 26 H 0.04 0.75 6.99 -51.93 -0.36 0.39 16 27 H 0.11 1.13 4.49 -51.93 -0.23 0.90 16 28 H 0.12 1.44 7.94 -51.93 -0.41 1.03 16 29 H 0.08 0.96 7.86 -51.93 -0.41 0.55 16 30 H 0.09 0.66 6.74 -51.93 -0.35 0.31 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 288.61 15.07 4.35 4.35 Total: -1.00 -35.65 288.61 -4.80 -40.45 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -3.65 Total: -3.08 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -0.48 Total: 8.93 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.35 Total: -38.77 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.81 Total: -19.13 kcal Atomic # 9 Polarization: -9.39 SS G_CDS: 0.10 Total: -9.28 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -35.65 -4.80 -40.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159676804.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.469 kcal (2) G-P(sol) polarization free energy of solvation -35.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds