Wall clock time and date at job start Tue Mar 31 2020 05:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00351 * 2 1 4 4 C 1.50706 * 109.46860 * 269.99924 * 3 2 1 5 5 H 1.07993 * 120.00148 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99918 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00247 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99883 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.47285 * 90.00419 * 8 6 4 10 10 H 1.48501 * 109.46865 * 210.00370 * 8 6 4 11 11 H 1.48501 * 109.47249 * 329.99745 * 8 6 4 12 12 C 1.34775 * 119.99854 * 179.97438 * 2 1 3 13 13 O 1.21702 * 120.00368 * 180.11173 * 12 2 1 14 14 C 1.46586 * 119.99959 * 0.11044 * 12 2 1 15 15 C 1.36264 * 125.44292 * 171.38694 * 14 12 2 16 16 C 1.37979 * 114.03391 * 180.02562 * 15 14 12 17 17 C 1.35554 * 113.91052 * 359.97027 * 16 15 14 18 18 S 1.70359 * 111.19521 * 0.05061 * 17 16 15 19 19 C 1.51724 * 123.16950 * 179.97438 * 17 16 15 20 20 C 1.53361 * 107.99472 * 344.33492 * 19 17 16 21 21 O 1.43028 * 109.11860 * 47.86963 * 20 19 17 22 22 C 1.42999 * 114.15052 * 288.42642 * 21 20 19 23 23 H 1.09002 * 109.47090 * 263.46257 * 1 2 3 24 24 H 1.09001 * 109.46538 * 23.45849 * 1 2 3 25 25 H 1.09002 * 109.47292 * 143.45719 * 1 2 3 26 26 H 1.08997 * 109.47405 * 29.99529 * 3 2 1 27 27 H 1.08996 * 109.47599 * 149.99787 * 3 2 1 28 28 H 0.97000 * 120.00567 * 179.97438 * 7 6 4 29 29 H 1.08002 * 122.98510 * 0.02562 * 15 14 12 30 30 H 1.08997 * 109.77070 * 224.69486 * 19 17 16 31 31 H 1.09003 * 109.76981 * 103.97610 * 19 17 16 32 32 H 1.09004 * 109.52699 * 167.75776 * 20 19 17 33 33 H 1.08995 * 109.53309 * 287.97586 * 20 19 17 34 34 H 1.09007 * 109.68781 * 171.74266 * 22 21 20 35 35 H 1.08997 * 109.68840 * 292.27224 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0982 1.0957 -2.2417 6 6 3.1271 2.8772 -1.6729 7 7 3.3459 3.2571 -2.9128 8 14 3.7341 3.9285 -0.2530 9 1 5.1072 3.5067 0.1236 10 1 3.7501 5.3552 -0.6650 11 1 2.8275 3.7596 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3559 -1.1673 0.0026 14 6 1.4059 -2.4366 -0.0014 15 6 1.9616 -3.6697 -0.1673 16 6 1.0515 -4.7060 -0.1291 17 6 -0.2287 -4.3060 0.0674 18 16 -0.3296 -2.6113 0.2091 19 6 -1.3973 -5.2706 0.1441 20 6 -0.9352 -6.6205 -0.4182 21 8 0.3214 -6.9675 0.1702 22 6 1.4205 -6.1755 -0.2876 23 1 -0.3633 -0.1170 1.0210 24 1 -0.3632 0.9428 -0.4091 25 1 -0.3634 -0.8256 -0.6119 26 1 1.6086 2.0284 0.5137 27 1 3.1500 1.1384 0.5138 28 1 3.8227 4.0830 -3.0901 29 1 3.0205 -3.8223 -0.3156 30 1 -2.2292 -4.8898 -0.4485 31 1 -1.7088 -5.3907 1.1817 32 1 -1.6731 -7.3864 -0.1797 33 1 -0.8227 -6.5455 -1.4998 34 1 2.3064 -6.3979 0.3074 35 1 1.6186 -6.3939 -1.3369 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264081764.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:04 Heat of formation + Delta-G solvation = -39.726271 kcal Electronic energy + Delta-G solvation = -19475.131318 eV Core-core repulsion = 16372.254041 eV Total energy + Delta-G solvation = -3102.877277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.82679 -39.04558 -36.41961 -35.01092 -32.76139 -32.45948 -30.08828 -28.50699 -26.34801 -25.88183 -24.76199 -22.87676 -21.57755 -19.58297 -18.10118 -17.72101 -17.00063 -16.74401 -16.16142 -15.59381 -15.23914 -14.90780 -14.88994 -14.27962 -13.76366 -13.50248 -13.21342 -13.09664 -12.77499 -12.66292 -12.42697 -12.16686 -11.93292 -11.63006 -11.51024 -11.22322 -11.01267 -10.60678 -10.50597 -10.20313 -9.79674 -9.61023 -9.30852 -8.62663 -8.57062 -8.29002 -7.79810 -6.12129 -4.11919 0.65452 1.56442 2.01036 2.39628 3.26946 3.32749 3.34946 3.59024 3.61124 3.79918 4.36387 4.44226 4.60970 4.76899 4.92411 5.01870 5.16168 5.21507 5.22013 5.33667 5.37564 5.41574 5.56151 5.60281 5.70770 5.95856 5.98705 6.19385 6.41139 6.62216 6.86654 6.89355 7.18514 7.54652 8.06076 8.41346 8.78837 8.91477 9.47072 11.01122 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.039398 B = 0.004076 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.518536 B = 6867.590766 C = 7133.928226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.590 5.590 3 C 0.217 3.783 4 C -0.533 4.533 5 H 0.075 0.925 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.579 3.421 13 O -0.526 6.526 14 C -0.248 4.248 15 C -0.056 4.056 16 C -0.160 4.160 17 C -0.240 4.240 18 S 0.237 5.763 19 C -0.080 4.080 20 C 0.064 3.936 21 O -0.379 6.379 22 C 0.126 3.874 23 H 0.056 0.944 24 H 0.096 0.904 25 H 0.065 0.935 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.265 0.735 29 H 0.151 0.849 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 -16.623 6.819 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.321 5.321 3 C 0.097 3.903 4 C -0.571 4.571 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.365 3.635 13 O -0.405 6.405 14 C -0.368 4.368 15 C -0.089 4.089 16 C -0.173 4.173 17 C -0.358 4.358 18 S 0.509 5.491 19 C -0.119 4.119 20 C -0.014 4.014 21 O -0.297 6.297 22 C 0.048 3.952 23 H 0.075 0.925 24 H 0.115 0.885 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.168 0.832 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.520 -15.563 7.088 21.194 hybrid contribution 1.426 -0.098 0.040 1.430 sum -11.094 -15.660 7.128 20.473 Atomic orbital electron populations 1.21881 0.81453 1.03333 1.00966 1.47707 1.05955 1.07119 1.71356 1.19750 0.92544 0.79344 0.98676 1.21313 1.37366 1.07323 0.91114 0.90671 1.24848 0.95115 0.97292 0.95632 1.69889 1.41253 1.23553 1.18682 0.86850 0.80221 0.79779 0.82848 1.19803 1.20977 1.19013 1.16891 0.86847 0.81942 0.77837 1.90804 1.12591 1.86524 1.50571 1.24650 0.97048 0.98447 1.16676 1.20317 1.01075 0.89529 0.97944 1.20023 0.92316 0.97447 1.07559 1.25214 0.98728 1.02951 1.08925 1.83431 1.03906 0.95351 1.66435 1.20961 0.94286 0.93656 1.02971 1.22609 0.86082 0.95554 0.97132 1.87952 1.16150 1.57801 1.67779 1.21519 0.89429 0.84461 0.99794 0.92519 0.88512 0.91733 0.94793 0.94178 0.92469 0.83185 0.89502 0.89455 0.88242 0.92558 0.87521 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 8.92 59.85 0.53 1.63 16 2 N -0.59 -12.50 2.86 -184.54 -0.53 -13.02 16 3 C 0.22 5.31 4.20 -5.19 -0.02 5.29 16 4 C -0.53 -15.31 9.94 -34.44 -0.34 -15.65 16 5 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 7 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 8 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 12 C 0.58 12.58 7.64 -12.89 -0.10 12.48 16 13 O -0.53 -13.48 16.43 5.19 0.09 -13.39 16 14 C -0.25 -4.28 6.22 -36.93 -0.23 -4.51 16 15 C -0.06 -0.88 9.85 -40.39 -0.40 -1.28 16 16 C -0.16 -2.12 5.84 -104.86 -0.61 -2.74 16 17 C -0.24 -2.94 6.23 -34.76 -0.22 -3.16 16 18 S 0.24 3.04 17.84 -107.50 -1.92 1.12 16 19 C -0.08 -0.72 6.52 -27.19 -0.18 -0.89 16 20 C 0.06 0.55 6.82 37.34 0.25 0.81 16 21 O -0.38 -4.25 10.72 -35.23 -0.38 -4.62 16 22 C 0.13 1.37 7.12 36.82 0.26 1.63 16 23 H 0.06 0.73 7.76 -51.93 -0.40 0.32 16 24 H 0.10 1.48 8.02 -51.93 -0.42 1.07 16 25 H 0.07 0.93 4.62 -23.22 -0.11 0.82 16 26 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 27 H 0.04 1.04 6.84 -51.93 -0.36 0.69 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.11 1.02 8.14 -51.92 -0.42 0.60 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 302.37 15.07 4.56 4.56 Total: -1.00 -34.76 302.37 -7.42 -42.17 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -4.20 Total: -2.42 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -1.14 Total: -4.34 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.25 Total: -39.77 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.29 Total: -18.02 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.92 Total: 1.12 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.76 -7.42 -42.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264081764.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.447 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds