Wall clock time and date at job start Tue Mar 31 2020 05:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00351 * 2 1 4 4 C 1.50706 * 109.46860 * 269.99924 * 3 2 1 5 5 H 1.07993 * 120.00148 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99918 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00247 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99883 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.47285 * 90.00419 * 8 6 4 10 10 H 1.48501 * 109.46865 * 210.00370 * 8 6 4 11 11 H 1.48501 * 109.47249 * 329.99745 * 8 6 4 12 12 C 1.34775 * 119.99854 * 179.97438 * 2 1 3 13 13 O 1.21702 * 120.00368 * 180.11173 * 12 2 1 14 14 C 1.46586 * 119.99959 * 0.11044 * 12 2 1 15 15 C 1.36264 * 125.44292 * 171.38694 * 14 12 2 16 16 C 1.37979 * 114.03391 * 180.02562 * 15 14 12 17 17 C 1.35554 * 113.91052 * 359.97027 * 16 15 14 18 18 S 1.70359 * 111.19521 * 0.05061 * 17 16 15 19 19 C 1.51724 * 123.16950 * 179.97438 * 17 16 15 20 20 C 1.53361 * 107.99472 * 344.33492 * 19 17 16 21 21 O 1.43028 * 109.11860 * 47.86963 * 20 19 17 22 22 C 1.42999 * 114.15052 * 288.42642 * 21 20 19 23 23 H 1.09002 * 109.47090 * 263.46257 * 1 2 3 24 24 H 1.09001 * 109.46538 * 23.45849 * 1 2 3 25 25 H 1.09002 * 109.47292 * 143.45719 * 1 2 3 26 26 H 1.08997 * 109.47405 * 29.99529 * 3 2 1 27 27 H 1.08996 * 109.47599 * 149.99787 * 3 2 1 28 28 H 0.97000 * 120.00567 * 179.97438 * 7 6 4 29 29 H 1.08002 * 122.98510 * 0.02562 * 15 14 12 30 30 H 1.08997 * 109.77070 * 224.69486 * 19 17 16 31 31 H 1.09003 * 109.76981 * 103.97610 * 19 17 16 32 32 H 1.09004 * 109.52699 * 167.75776 * 20 19 17 33 33 H 1.08995 * 109.53309 * 287.97586 * 20 19 17 34 34 H 1.09007 * 109.68781 * 171.74266 * 22 21 20 35 35 H 1.08997 * 109.68840 * 292.27224 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0982 1.0957 -2.2417 6 6 3.1271 2.8772 -1.6729 7 7 3.3459 3.2571 -2.9128 8 14 3.7341 3.9285 -0.2530 9 1 5.1072 3.5067 0.1236 10 1 3.7501 5.3552 -0.6650 11 1 2.8275 3.7596 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3559 -1.1673 0.0026 14 6 1.4059 -2.4366 -0.0014 15 6 1.9616 -3.6697 -0.1673 16 6 1.0515 -4.7060 -0.1291 17 6 -0.2287 -4.3060 0.0674 18 16 -0.3296 -2.6113 0.2091 19 6 -1.3973 -5.2706 0.1441 20 6 -0.9352 -6.6205 -0.4182 21 8 0.3214 -6.9675 0.1702 22 6 1.4205 -6.1755 -0.2876 23 1 -0.3633 -0.1170 1.0210 24 1 -0.3632 0.9428 -0.4091 25 1 -0.3634 -0.8256 -0.6119 26 1 1.6086 2.0284 0.5137 27 1 3.1500 1.1384 0.5138 28 1 3.8227 4.0830 -3.0901 29 1 3.0205 -3.8223 -0.3156 30 1 -2.2292 -4.8898 -0.4485 31 1 -1.7088 -5.3907 1.1817 32 1 -1.6731 -7.3864 -0.1797 33 1 -0.8227 -6.5455 -1.4998 34 1 2.3064 -6.3979 0.3074 35 1 1.6186 -6.3939 -1.3369 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264081764.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:03 Heat of formation + Delta-G solvation = -64.582265 kcal Electronic energy + Delta-G solvation = -19476.209155 eV Core-core repulsion = 16372.254041 eV Total energy + Delta-G solvation = -3103.955114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.97784 -40.40529 -37.48656 -36.70908 -34.78970 -33.42734 -31.47286 -30.08054 -27.79781 -26.79267 -26.12522 -24.24414 -22.90597 -20.92220 -19.23719 -19.17061 -19.06036 -17.70983 -17.30745 -16.99980 -16.57087 -16.18208 -16.05426 -15.83774 -15.11192 -14.67591 -14.46818 -14.30410 -14.21164 -14.03947 -13.78044 -13.61975 -13.28733 -13.06806 -12.84506 -12.49489 -12.46038 -12.06289 -11.96798 -11.77469 -11.50520 -11.03953 -10.85407 -10.63098 -9.85611 -9.42225 -9.27573 -8.36248 -6.42823 -0.52503 0.43772 0.92653 1.23187 1.32638 1.37406 1.45514 2.03098 2.25035 2.29916 2.90380 2.97896 3.50085 3.64085 3.82756 3.99103 4.07904 4.29514 4.33308 4.41287 4.45535 4.60589 4.64942 4.70471 4.74922 4.76561 4.82243 4.95887 4.96423 5.18821 5.36373 5.39220 5.45550 6.14172 6.18604 6.45275 6.58358 7.10471 7.24623 8.80768 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.039398 B = 0.004076 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.518536 B = 6867.590766 C = 7133.928226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.600 5.600 3 C 0.224 3.776 4 C -0.542 4.542 5 H 0.027 0.973 6 C 0.013 3.987 7 N -0.944 5.944 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.234 1.234 12 C 0.570 3.430 13 O -0.586 6.586 14 C -0.302 4.302 15 C -0.052 4.052 16 C -0.178 4.178 17 C -0.228 4.228 18 S 0.301 5.699 19 C -0.081 4.081 20 C 0.057 3.943 21 O -0.392 6.392 22 C 0.128 3.872 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.022 0.978 28 H 0.270 0.730 29 H 0.138 0.862 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.061 0.939 34 H 0.113 0.887 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.796 -17.653 8.678 24.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.329 5.329 3 C 0.103 3.897 4 C -0.580 4.580 5 H 0.045 0.955 6 C -0.185 4.185 7 N -0.584 5.584 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.157 1.157 12 C 0.359 3.641 13 O -0.469 6.469 14 C -0.422 4.422 15 C -0.086 4.086 16 C -0.190 4.190 17 C -0.347 4.347 18 S 0.573 5.427 19 C -0.120 4.120 20 C -0.020 4.020 21 O -0.311 6.311 22 C 0.050 3.950 23 H 0.112 0.888 24 H 0.118 0.882 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.146 0.854 33 H 0.079 0.921 34 H 0.131 0.869 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.327 -16.602 8.954 24.305 hybrid contribution 2.156 0.063 -0.628 2.246 sum -13.172 -16.539 8.327 22.723 Atomic orbital electron populations 1.22209 0.78160 1.04262 1.03593 1.47777 1.08146 1.05955 1.71064 1.19467 0.92935 0.81581 0.95744 1.21522 1.37395 1.06953 0.92177 0.95491 1.25861 0.95042 0.98846 0.98772 1.70043 1.42445 1.24502 1.21389 0.85697 0.79624 0.77734 0.79792 1.20277 1.19791 1.15693 1.17527 0.86582 0.83438 0.76526 1.90740 1.15189 1.87640 1.53332 1.24294 1.00362 0.96622 1.20951 1.20448 1.01229 0.90018 0.96903 1.20173 0.92278 0.98147 1.08421 1.25808 0.99684 1.03409 1.05800 1.82912 0.99304 0.95472 1.64975 1.21210 0.93446 0.92893 1.04468 1.22883 0.85594 0.96168 0.97393 1.87944 1.17022 1.57804 1.68300 1.21572 0.89880 0.82898 1.00682 0.88845 0.88200 0.90478 0.92005 0.95952 0.92122 0.84382 0.86865 0.88000 0.85418 0.92089 0.86874 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.84 8.92 127.77 1.14 2.98 16 2 N -0.60 -25.65 2.86 -855.99 -2.45 -28.10 16 3 C 0.22 11.08 4.20 85.64 0.36 11.44 16 4 C -0.54 -32.30 9.94 25.60 0.25 -32.05 16 5 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 6 C 0.01 0.78 5.47 84.66 0.46 1.24 16 7 N -0.94 -59.93 13.96 21.45 0.30 -59.63 16 8 Si 0.95 44.22 27.47 68.60 1.88 46.10 16 9 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.23 -9.64 6.54 99.48 0.65 -8.99 16 12 C 0.57 25.74 7.64 86.42 0.66 26.40 16 13 O -0.59 -31.92 16.43 -4.35 -0.07 -31.99 16 14 C -0.30 -10.53 6.22 23.99 0.15 -10.38 16 15 C -0.05 -1.66 9.85 21.75 0.21 -1.44 16 16 C -0.18 -4.47 5.84 -20.02 -0.12 -4.59 16 17 C -0.23 -4.92 6.23 25.39 0.16 -4.76 16 18 S 0.30 6.97 17.84 -56.49 -1.01 5.96 16 19 C -0.08 -1.10 6.52 30.30 0.20 -0.90 16 20 C 0.06 0.76 6.82 72.10 0.49 1.25 16 21 O -0.39 -7.69 10.72 -148.98 -1.60 -9.28 16 22 C 0.13 2.57 7.12 71.76 0.51 3.08 16 23 H 0.09 2.10 7.76 -2.39 -0.02 2.08 16 24 H 0.10 2.91 8.02 -2.39 -0.02 2.89 16 25 H 0.08 2.08 4.62 -20.64 -0.10 1.99 16 26 H 0.06 2.70 7.13 -2.39 -0.02 2.68 16 27 H 0.02 1.19 6.84 -2.39 -0.02 1.17 16 28 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 29 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 30 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.13 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.06 0.77 8.08 -2.39 -0.02 0.75 16 34 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -80.49 302.37 2.51 -77.99 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.96 Total: 6.69 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 4.48 Total: -7.73 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -2.15 Total: -87.73 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -1.67 Total: -41.27 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.10 kcal Atomic # 16 Polarization: 6.97 SS G_CDS: -1.01 Total: 5.96 kcal Total: -80.49 2.51 -77.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264081764.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.404 kcal (2) G-P(sol) polarization free energy of solvation -80.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds