Wall clock time and date at job start Tue Mar 31 2020 06:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99605 * 2 1 4 4 H 1.48506 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47190 * 299.99315 * 3 2 1 6 6 H 1.48498 * 109.47416 * 59.99555 * 3 2 1 7 7 C 1.37871 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47456 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47551 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00195 * 179.97438 * 11 10 9 13 13 O 1.21583 * 119.99947 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99726 * 180.27548 * 12 11 10 15 15 C 1.39007 * 119.99875 * 179.72731 * 14 12 11 16 16 N 1.29624 * 124.94725 * 180.02562 * 15 14 12 17 17 C 1.32022 * 116.91037 * 179.97438 * 16 15 14 18 18 C 1.50695 * 122.71566 * 179.97438 * 17 16 15 19 19 C 1.53003 * 117.49619 * 163.64712 * 18 17 16 20 20 C 1.52999 * 60.00226 * 252.50845 * 19 18 17 21 21 C 1.33415 * 114.56749 * 0.02562 * 17 16 15 22 22 S 1.70970 * 124.94388 * 359.69461 * 15 14 12 23 23 H 0.96991 * 119.99888 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.47031 * 60.00619 * 9 7 2 25 25 H 1.09003 * 109.47848 * 300.00620 * 9 7 2 26 26 H 1.08998 * 109.47059 * 60.00333 * 10 9 7 27 27 H 1.09002 * 109.47542 * 300.00767 * 10 9 7 28 28 H 0.97000 * 120.00069 * 0.02562 * 11 10 9 29 29 H 0.97000 * 120.00483 * 359.73178 * 14 12 11 30 30 H 1.09000 * 115.54750 * 309.35375 * 18 17 16 31 31 H 1.08991 * 117.50166 * 0.02562 * 19 18 17 32 32 H 1.09008 * 117.49390 * 145.02490 * 19 18 17 33 33 H 1.09002 * 117.50439 * 252.51598 * 20 19 18 34 34 H 1.08999 * 117.51449 * 107.47628 * 20 19 18 35 35 H 1.08004 * 125.96439 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5130 -4.9308 0.0020 12 6 2.1869 -6.0979 0.0013 13 8 3.4027 -6.0979 0.0008 14 7 1.5130 -7.2651 -0.0038 15 6 2.2080 -8.4689 -0.0102 16 7 1.6591 -9.6432 -0.0159 17 6 2.4726 -10.6830 -0.0220 18 6 1.9759 -12.1057 -0.0286 19 6 2.9721 -13.2000 -0.4173 20 6 1.8537 -12.8052 -1.3839 21 6 3.7701 -10.3722 -0.0209 22 16 3.9113 -8.6162 -0.0197 23 1 -0.4849 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 2.8727 -3.6039 0.8909 27 1 2.8715 -3.6046 -0.8890 28 1 0.5430 -4.9308 0.0020 29 1 0.5430 -7.2652 -0.0031 30 1 1.2330 -12.3478 0.7315 31 1 3.9868 -12.8909 -0.6679 32 1 2.8847 -14.1624 0.0872 33 1 1.0307 -13.5076 -1.5153 34 1 2.1323 -12.2361 -2.2708 35 1 4.5905 -11.0746 -0.0256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272934764.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:25 Heat of formation + Delta-G solvation = 18.342201 kcal Electronic energy + Delta-G solvation = -18388.597181 eV Core-core repulsion = 15320.530693 eV Total energy + Delta-G solvation = -3068.066488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.78807 -40.79867 -37.83921 -36.82297 -35.79179 -34.86704 -31.72783 -30.21484 -27.12178 -26.25114 -23.87044 -23.19397 -22.90090 -22.60117 -20.89230 -19.48488 -18.90291 -18.38207 -17.79327 -17.25079 -16.65921 -16.49886 -16.31719 -15.82684 -15.40883 -15.37786 -14.78983 -14.30788 -14.13527 -13.56877 -13.23080 -12.98987 -12.59644 -12.48646 -12.35426 -12.32151 -12.18432 -11.64603 -11.51941 -11.37731 -11.32980 -11.07563 -10.76057 -10.61727 -10.23358 -10.19542 -9.15383 -8.24006 -6.33756 -0.22597 0.15476 0.88310 1.19245 1.41990 1.44067 1.49177 1.56320 2.01547 2.40590 2.81064 3.04435 3.11733 3.44255 3.99178 4.09030 4.24514 4.36050 4.39299 4.50503 4.52166 4.75027 4.82333 4.86567 5.01836 5.11799 5.18993 5.21791 5.28694 5.41096 5.56070 5.58661 5.79546 6.15204 6.57004 6.79781 6.80628 7.11702 7.35764 8.88027 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.060966 B = 0.002654 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.165449 B =10547.601260 C =10905.602171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.021 3.979 10 C 0.158 3.842 11 N -0.712 5.712 12 C 0.701 3.299 13 O -0.589 6.589 14 N -0.628 5.628 15 C 0.252 3.748 16 N -0.529 5.529 17 C 0.105 3.895 18 C -0.103 4.103 19 C -0.151 4.151 20 C -0.166 4.166 21 C -0.311 4.311 22 S 0.228 5.772 23 H 0.265 0.735 24 H 0.011 0.989 25 H 0.011 0.989 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.413 0.587 29 H 0.431 0.569 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.167 -24.458 -0.645 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.017 4.017 10 C 0.035 3.965 11 N -0.366 5.366 12 C 0.400 3.600 13 O -0.469 6.469 14 N -0.281 5.281 15 C -0.116 4.116 16 N -0.253 5.253 17 C -0.026 4.026 18 C -0.124 4.124 19 C -0.188 4.188 20 C -0.203 4.203 21 C -0.452 4.452 22 S 0.478 5.522 23 H 0.074 0.926 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.250 0.750 29 H 0.271 0.729 30 H 0.137 0.863 31 H 0.122 0.878 32 H 0.139 0.861 33 H 0.132 0.868 34 H 0.103 0.897 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.320 -23.460 -0.647 24.064 hybrid contribution -1.389 0.425 0.039 1.453 sum 3.931 -23.035 -0.608 23.376 Atomic orbital electron populations 1.70062 1.07528 1.27900 1.51194 1.25857 0.95766 1.03089 0.94555 0.85411 0.79089 0.78892 0.77742 1.18786 1.20427 1.20442 1.21478 0.93725 0.91693 1.51189 0.91964 1.19165 0.94330 0.91573 0.96632 1.21284 0.94691 0.79793 1.00740 1.45175 1.10949 1.03728 1.76747 1.15885 0.85254 0.80504 0.78390 1.90835 1.12350 1.85201 1.58470 1.41645 1.11158 1.00567 1.74744 1.23243 0.96045 0.88679 1.03606 1.66030 1.39556 0.96394 1.23339 1.19259 0.88411 0.93622 1.01347 1.20407 1.04610 0.86002 1.01342 1.23164 0.95374 0.98322 1.01921 1.23039 1.02179 1.02682 0.92450 1.27450 1.01451 1.00939 1.15322 1.85176 1.00725 0.98511 1.67775 0.92611 0.97112 0.97104 0.92649 0.92659 0.75033 0.72923 0.86253 0.87794 0.86064 0.86847 0.89694 0.78285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.26 13.29 21.45 0.28 -52.97 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.96 42.70 29.54 68.60 2.03 44.73 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.54 -29.13 9.11 25.60 0.23 -28.90 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 0.98 5.09 29.85 0.15 1.13 16 10 C 0.16 6.27 5.61 86.38 0.48 6.75 16 11 N -0.71 -22.71 5.56 -478.54 -2.66 -25.37 16 12 C 0.70 22.55 8.53 179.05 1.53 24.07 16 13 O -0.59 -22.24 13.81 -3.98 -0.05 -22.30 16 14 N -0.63 -16.88 5.41 -327.46 -1.77 -18.65 16 15 C 0.25 7.24 8.19 179.20 1.47 8.71 16 16 N -0.53 -14.77 10.58 -189.59 -2.01 -16.78 16 17 C 0.11 2.48 6.41 41.44 0.27 2.75 16 18 C -0.10 -1.80 6.30 -11.54 -0.07 -1.87 16 19 C -0.15 -1.71 9.91 30.59 0.30 -1.41 16 20 C -0.17 -2.35 10.23 30.60 0.31 -2.03 16 21 C -0.31 -6.67 10.50 66.73 0.70 -5.97 16 22 S 0.23 6.14 20.21 -56.49 -1.14 5.00 16 23 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 24 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 25 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.41 11.03 8.49 -92.71 -0.79 10.24 16 29 H 0.43 9.11 8.83 -92.71 -0.82 8.29 16 30 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.10 1.06 6.79 -2.39 -0.02 1.04 16 32 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.20 2.96 6.94 -2.91 -0.02 2.94 16 Total: -1.00 -65.39 317.29 0.04 -65.35 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -0.47 Total: 16.96 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 5.84 Total: 4.03 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -6.15 Total: -113.77 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.05 Total: -22.30 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.14 Total: 5.00 kcal Total: -65.39 0.04 -65.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272934764.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.691 kcal (2) G-P(sol) polarization free energy of solvation -65.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds