Wall clock time and date at job start Tue Mar 31 2020 05:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42094 * 109.46639 * 2 1 4 4 C 1.81396 * 103.00203 * 116.39049 * 2 1 3 5 5 C 1.52997 * 109.47360 * 180.02562 * 4 2 1 6 6 H 1.09002 * 109.47153 * 59.99820 * 5 4 2 7 7 N 1.46500 * 109.47007 * 299.99909 * 5 4 2 8 8 C 1.34777 * 120.00075 * 84.99755 * 7 5 4 9 9 O 1.21692 * 119.99797 * 0.02562 * 8 7 5 10 10 C 1.46370 * 120.00227 * 179.97438 * 8 7 5 11 11 H 1.08002 * 119.99675 * 0.02562 * 10 8 7 12 12 C 1.40047 * 120.00156 * 179.97438 * 10 8 7 13 13 N 1.30675 * 120.00119 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00182 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46951 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47106 * 120.00073 * 14 12 10 17 17 H 1.48501 * 109.47520 * 240.00564 * 14 12 10 18 18 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 19 19 C 1.38238 * 119.99612 * 79.72655 * 18 5 4 20 20 C 1.38236 * 119.99607 * 179.81010 * 19 18 5 21 21 C 1.38235 * 120.00116 * 0.39532 * 20 19 18 22 22 C 1.38233 * 119.99985 * 359.86014 * 21 20 19 23 23 C 1.38223 * 120.00108 * 260.00042 * 18 5 4 24 24 H 1.08992 * 109.46981 * 303.60476 * 1 2 3 25 25 H 1.08996 * 109.46998 * 63.61558 * 1 2 3 26 26 H 1.09001 * 109.46692 * 183.60828 * 1 2 3 27 27 H 1.09002 * 109.47134 * 59.99960 * 4 2 1 28 28 H 1.08998 * 109.46953 * 300.00697 * 4 2 1 29 29 H 0.96997 * 120.00274 * 264.99726 * 7 5 4 30 30 H 0.96991 * 119.99969 * 180.02562 * 13 12 10 31 31 H 1.08001 * 120.00192 * 359.97438 * 19 18 5 32 32 H 1.08000 * 120.00146 * 180.23159 * 20 19 18 33 33 H 1.08002 * 120.00422 * 179.83385 * 21 20 19 34 34 H 1.08000 * 120.00342 * 179.97438 * 22 21 20 35 35 H 1.07998 * 120.00341 * 359.97438 * 23 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2222 -0.7856 1.5833 5 6 3.7424 -0.8617 1.7380 6 1 4.1609 0.1445 1.7131 7 7 4.3059 -1.6523 0.6410 8 6 4.5850 -1.0645 -0.5393 9 8 4.3693 0.1232 -0.6935 10 6 5.1486 -1.8543 -1.6352 11 1 5.3404 -2.9083 -1.4981 12 6 5.4380 -1.2435 -2.8618 13 7 5.2055 0.0316 -3.0278 14 14 6.1579 -2.2513 -4.2602 15 1 6.3255 -3.6597 -3.8201 16 1 5.2413 -2.2037 -5.4276 17 1 7.4788 -1.6920 -4.6447 18 6 4.0814 -1.5138 3.0537 19 6 4.0293 -2.8897 3.1768 20 6 4.3441 -3.4881 4.3825 21 6 4.7030 -2.7102 5.4673 22 6 4.7500 -1.3340 5.3457 23 6 4.4390 -0.7358 4.1388 24 1 -0.3633 0.5687 0.8559 25 1 -0.3633 0.4567 -0.9206 26 1 -0.3633 -1.0257 0.0647 27 1 1.8032 -1.7916 1.6084 28 1 1.8031 -0.1972 2.3995 29 1 4.4783 -2.5989 0.7640 30 1 5.4056 0.4545 -3.8774 31 1 3.7452 -3.4972 2.3302 32 1 4.3070 -4.5633 4.4777 33 1 4.9464 -3.1775 6.4101 34 1 5.0300 -0.7262 6.1933 35 1 4.4758 0.3393 4.0438 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274150758.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:58 Heat of formation + Delta-G solvation = -45.607143 kcal Electronic energy + Delta-G solvation = -19934.529778 eV Core-core repulsion = 16831.397488 eV Total energy + Delta-G solvation = -3103.132291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.40383 -37.43432 -34.71279 -34.45225 -32.47446 -30.94714 -30.47072 -29.00135 -28.19597 -26.16611 -23.57534 -22.51799 -20.87915 -19.29627 -17.78576 -16.54403 -16.44748 -15.53473 -15.31068 -14.95616 -14.63867 -14.33044 -14.14845 -13.89508 -13.27642 -13.18923 -12.87238 -12.73354 -12.46316 -12.32216 -12.06627 -11.82984 -11.45179 -11.23698 -11.04878 -10.96336 -10.86793 -10.52140 -10.46092 -10.21402 -9.40303 -8.90225 -8.79709 -8.58046 -7.73269 -7.67659 -7.21781 -6.22166 -4.69522 1.47781 1.52411 2.37494 3.12618 3.21888 3.25420 3.51457 3.90714 4.08357 4.47385 4.61338 4.83335 5.01319 5.04543 5.10949 5.26792 5.48286 5.58046 5.61521 5.64470 5.69930 5.78704 5.88026 6.03804 6.12227 6.20522 6.33964 6.41517 6.57968 6.60430 6.84701 7.12763 7.40505 7.81241 7.96280 8.27154 8.98045 9.39462 10.50015 10.68657 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015332 B = 0.006421 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.773738 B = 4359.451069 C = 5589.303870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.541 4.541 2 S 1.320 4.680 3 O -0.814 6.814 4 C -0.467 4.467 5 C 0.212 3.788 6 H 0.089 0.911 7 N -0.762 5.762 8 C 0.537 3.463 9 O -0.554 6.554 10 C -0.539 4.539 11 H 0.071 0.929 12 C 0.088 3.912 13 N -0.759 5.759 14 Si 0.905 3.095 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.278 1.278 18 C -0.067 4.067 19 C -0.111 4.111 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.115 4.115 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.385 0.615 30 H 0.270 0.730 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.563 -8.613 9.964 13.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.693 4.693 2 S 1.511 4.489 3 O -0.810 6.810 4 C -0.603 4.603 5 C 0.104 3.896 6 H 0.107 0.893 7 N -0.418 5.418 8 C 0.342 3.658 9 O -0.438 6.438 10 C -0.576 4.576 11 H 0.090 0.910 12 C -0.133 4.133 13 N -0.387 5.387 14 Si 0.730 3.270 15 H -0.187 1.187 16 H -0.201 1.201 17 H -0.203 1.203 18 C -0.069 4.069 19 C -0.129 4.129 20 C -0.138 4.138 21 C -0.149 4.149 22 C -0.139 4.139 23 C -0.133 4.133 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.118 0.882 27 H 0.127 0.873 28 H 0.096 0.904 29 H 0.218 0.782 30 H 0.081 0.919 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.168 -7.184 9.025 12.265 hybrid contribution -0.435 0.183 1.250 1.337 sum -4.603 -7.001 10.275 13.258 Atomic orbital electron populations 1.28292 1.29467 1.06229 1.05358 1.72545 0.81095 0.99453 0.95831 1.93096 1.71912 1.36434 1.79519 1.28344 1.02420 1.10002 1.19574 1.18908 0.89682 0.96783 0.84208 0.89348 1.46464 1.70616 1.11834 1.12873 1.18549 0.78676 0.87797 0.80735 1.90776 1.56306 1.15232 1.81517 1.20872 1.44415 0.96286 0.95994 0.91050 1.25708 0.93791 0.94646 0.99156 1.70032 1.34676 1.10070 1.23893 0.86352 0.79019 0.80648 0.80992 1.18720 1.20064 1.20314 1.20141 0.97463 0.93929 0.95385 1.21019 0.99934 0.94287 0.97679 1.21108 0.99882 0.99618 0.93188 1.21079 1.01213 0.93966 0.98651 1.21082 1.00453 0.94947 0.97376 1.21081 0.99505 0.99994 0.92763 0.91793 0.88923 0.88242 0.87279 0.90446 0.78207 0.91923 0.85576 0.86218 0.86528 0.86383 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.54 -8.46 10.74 101.05 1.09 -7.38 16 2 S 1.32 26.14 10.70 -107.50 -1.15 24.99 16 3 O -0.81 -21.68 16.64 -57.03 -0.95 -22.63 16 4 C -0.47 -7.87 5.59 37.16 0.21 -7.66 16 5 C 0.21 3.99 2.52 -69.08 -0.17 3.81 16 6 H 0.09 2.00 7.44 -51.93 -0.39 1.62 16 7 N -0.76 -15.32 4.96 -56.35 -0.28 -15.60 16 8 C 0.54 13.70 6.74 -12.99 -0.09 13.61 16 9 O -0.55 -16.37 10.99 -16.60 -0.18 -16.56 16 10 C -0.54 -13.79 9.54 -35.63 -0.34 -14.13 16 11 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 12 C 0.09 2.28 5.50 -17.37 -0.10 2.18 16 13 N -0.76 -21.53 11.83 55.55 0.66 -20.88 16 14 Si 0.91 18.88 29.56 -169.99 -5.02 13.86 16 15 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 16 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 18 C -0.07 -1.07 4.95 -104.63 -0.52 -1.59 16 19 C -0.11 -1.50 9.05 -39.58 -0.36 -1.86 16 20 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 21 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 22 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 23 C -0.11 -1.71 9.67 -39.59 -0.38 -2.09 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 26 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 27 H 0.11 1.49 8.14 -51.92 -0.42 1.07 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.38 6.65 6.87 -40.82 -0.28 6.37 16 30 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 31 H 0.13 1.52 6.94 -52.49 -0.36 1.16 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.12 1.75 8.04 -52.49 -0.42 1.33 16 LS Contribution 310.75 15.07 4.68 4.68 Total: -1.00 -35.12 310.75 -8.48 -43.60 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.38 Total: 9.29 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -1.86 Total: -20.75 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.38 Total: -36.48 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.13 Total: -39.19 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Atomic # 16 Polarization: 26.14 SS G_CDS: -1.15 Total: 24.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.12 -8.48 -43.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274150758.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.003 kcal (2) G-P(sol) polarization free energy of solvation -35.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds