Wall clock time and date at job start Tue Mar 31 2020 05:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42105 * 109.46779 * 2 1 4 4 C 1.81400 * 103.00154 * 243.61291 * 2 1 3 5 5 C 1.52995 * 109.47154 * 180.02562 * 4 2 1 6 6 H 1.08999 * 109.47559 * 59.99579 * 5 4 2 7 7 N 1.46506 * 109.46824 * 299.99705 * 5 4 2 8 8 C 1.34777 * 119.99873 * 85.00531 * 7 5 4 9 9 O 1.21695 * 119.99811 * 359.97438 * 8 7 5 10 10 C 1.46376 * 120.00195 * 180.02562 * 8 7 5 11 11 H 1.07999 * 119.99764 * 359.97438 * 10 8 7 12 12 C 1.40037 * 120.00112 * 180.02562 * 10 8 7 13 13 N 1.30672 * 120.00499 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00016 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47086 * 59.99574 * 14 12 10 16 16 H 1.48503 * 109.47155 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47243 * 299.99511 * 14 12 10 18 18 C 1.50706 * 109.47032 * 180.02562 * 5 4 2 19 19 C 1.38235 * 119.99753 * 79.72495 * 18 5 4 20 20 C 1.38236 * 119.99750 * 179.80948 * 19 18 5 21 21 C 1.38239 * 119.99930 * 0.39774 * 20 19 18 22 22 C 1.38240 * 119.99754 * 359.85602 * 21 20 19 23 23 C 1.38230 * 120.00283 * 359.95539 * 22 21 20 24 24 H 1.09004 * 109.46939 * 176.38874 * 1 2 3 25 25 H 1.09004 * 109.47027 * 296.38316 * 1 2 3 26 26 H 1.08997 * 109.46842 * 56.38940 * 1 2 3 27 27 H 1.09002 * 109.46981 * 59.99886 * 4 2 1 28 28 H 1.09002 * 109.46985 * 299.99788 * 4 2 1 29 29 H 0.96995 * 120.00050 * 264.72646 * 7 5 4 30 30 H 0.97000 * 120.00986 * 180.02562 * 13 12 10 31 31 H 1.08002 * 120.00134 * 359.97438 * 19 18 5 32 32 H 1.07997 * 119.99978 * 180.22832 * 20 19 18 33 33 H 1.08000 * 120.00034 * 179.83073 * 21 20 19 34 34 H 1.07998 * 119.99804 * 179.97438 * 22 21 20 35 35 H 1.07999 * 120.00200 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2221 -0.7855 -1.5833 5 6 3.7424 -0.8627 -1.7375 6 1 4.1610 -1.4514 -0.9212 7 7 4.3059 0.4892 -1.7035 8 6 4.5850 1.0734 -0.5214 9 8 4.3685 0.4780 0.5176 10 6 5.1475 2.4243 -0.4874 11 1 5.3392 2.9528 -1.4095 12 6 5.4380 3.0311 0.7408 13 7 5.2065 2.3915 1.8566 14 14 6.1565 4.7548 0.7842 15 1 5.2157 5.6999 0.1308 16 1 6.3708 5.1664 2.1949 17 1 7.4538 4.7688 0.0616 18 6 4.0814 -1.5148 -3.0532 19 6 4.0294 -0.7795 -4.2226 20 6 4.3441 -1.3766 -5.4290 21 6 4.7030 -2.7110 -5.4669 22 6 4.7499 -3.4476 -4.2980 23 6 4.4389 -2.8496 -3.0912 24 1 -0.3633 -1.0257 -0.0647 25 1 -0.3633 0.4567 0.9207 26 1 -0.3633 0.5689 -0.8558 27 1 1.8032 -0.1970 -2.3996 28 1 1.8032 -1.7915 -1.6085 29 1 4.4818 0.9622 -2.5318 30 1 5.4074 2.8119 2.7074 31 1 3.7454 0.2621 -4.1935 32 1 4.3071 -0.8012 -6.3422 33 1 4.9463 -3.1782 -6.4098 34 1 5.0298 -4.4902 -4.3277 35 1 4.4759 -3.4249 -2.1780 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274150763.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:05 Heat of formation + Delta-G solvation = -62.929246 kcal Electronic energy + Delta-G solvation = -20127.216113 eV Core-core repulsion = 17023.332680 eV Total energy + Delta-G solvation = -3103.883434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58025 -39.05239 -36.18356 -35.91907 -34.36897 -32.20030 -31.63445 -30.24310 -29.48548 -28.03459 -24.86548 -23.56156 -22.24834 -20.90438 -19.41188 -17.98361 -17.67860 -17.31637 -16.62462 -16.33232 -16.03097 -15.64564 -15.62153 -15.22029 -14.88299 -14.34823 -14.18540 -14.06702 -13.85329 -13.57097 -13.49449 -13.22229 -12.94405 -12.80154 -12.54147 -12.46842 -12.23973 -12.09147 -11.88602 -11.78328 -10.83002 -10.65935 -9.78506 -9.72374 -9.57033 -9.34615 -8.70968 -8.14834 -6.64944 0.45145 0.54033 1.01033 1.34438 1.39284 1.47516 2.13355 2.27562 2.68153 2.89037 3.20553 3.42742 3.85616 3.89463 4.02698 4.18731 4.28245 4.32652 4.34724 4.43366 4.58207 4.66811 4.70380 4.83316 5.03451 5.11710 5.14196 5.21579 5.39819 5.60362 5.65183 5.73611 6.02185 6.15494 6.26879 6.43350 7.02260 7.61434 8.65286 8.85032 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.006403 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.595405 B = 4372.135596 C = 5505.615170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.514 4.514 2 S 1.289 4.711 3 O -0.869 6.869 4 C -0.450 4.450 5 C 0.208 3.792 6 H 0.083 0.917 7 N -0.764 5.764 8 C 0.582 3.418 9 O -0.605 6.605 10 C -0.572 4.572 11 H 0.059 0.941 12 C 0.039 3.961 13 N -0.806 5.806 14 Si 0.978 3.022 15 H -0.271 1.271 16 H -0.268 1.268 17 H -0.255 1.255 18 C -0.088 4.088 19 C -0.132 4.132 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.117 4.117 23 C -0.119 4.119 24 H 0.140 0.860 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.152 0.848 29 H 0.383 0.617 30 H 0.268 0.732 31 H 0.105 0.895 32 H 0.137 0.863 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 -12.980 -10.568 17.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.669 4.669 2 S 1.486 4.514 3 O -0.864 6.864 4 C -0.588 4.588 5 C 0.101 3.899 6 H 0.101 0.899 7 N -0.418 5.418 8 C 0.388 3.612 9 O -0.493 6.493 10 C -0.609 4.609 11 H 0.077 0.923 12 C -0.176 4.176 13 N -0.436 5.436 14 Si 0.799 3.201 15 H -0.196 1.196 16 H -0.193 1.193 17 H -0.179 1.179 18 C -0.089 4.089 19 C -0.150 4.150 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.135 4.135 23 C -0.138 4.138 24 H 0.159 0.841 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.170 0.830 29 H 0.215 0.785 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.155 0.845 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.470 -13.043 -8.909 16.415 hybrid contribution -0.660 2.679 -1.909 3.355 sum -5.130 -10.364 -10.819 15.836 Atomic orbital electron populations 1.27967 1.24989 1.08755 1.05232 1.70626 0.83331 0.99763 0.97692 1.93274 1.73354 1.38642 1.81174 1.28170 1.01367 1.11384 1.17904 1.19120 0.90534 0.84809 0.95397 0.89888 1.46235 1.70434 1.16403 1.08767 1.17759 0.75601 0.86377 0.81495 1.90325 1.59225 1.66278 1.33423 1.21153 1.45525 1.00789 0.93424 0.92252 1.26595 0.93707 1.02733 0.94558 1.70117 1.36778 1.38385 0.98309 0.85384 0.79165 0.77281 0.78225 1.19644 1.19280 1.17856 1.19971 0.99952 0.95186 0.93817 1.21030 1.01306 0.99580 0.93126 1.21362 0.99340 0.96088 0.97433 1.21505 0.99423 0.93936 0.99512 1.21477 0.99003 1.01187 0.91827 1.21288 0.99183 0.93548 0.99767 0.84138 0.88916 0.92469 0.91233 0.82999 0.78474 0.92190 0.87642 0.84469 0.83369 0.83099 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 -14.54 10.74 113.37 1.22 -13.32 16 2 S 1.29 48.72 11.85 -56.49 -0.67 48.05 16 3 O -0.87 -48.46 13.72 -126.04 -1.73 -50.19 16 4 C -0.45 -14.29 5.60 71.98 0.40 -13.89 16 5 C 0.21 7.66 2.52 44.24 0.11 7.77 16 6 H 0.08 3.21 7.44 -2.39 -0.02 3.19 16 7 N -0.76 -35.93 4.84 -450.37 -2.18 -38.11 16 8 C 0.58 34.25 4.90 86.36 0.42 34.67 16 9 O -0.60 -37.52 11.45 18.61 0.21 -37.30 16 10 C -0.57 -35.40 9.54 24.83 0.24 -35.16 16 11 H 0.06 3.48 7.85 -2.91 -0.02 3.45 16 12 C 0.04 2.37 5.50 85.30 0.47 2.84 16 13 N -0.81 -51.11 11.83 21.83 0.26 -50.85 16 14 Si 0.98 45.23 29.56 68.60 2.03 47.25 16 15 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 17 H -0.25 -10.98 7.11 99.48 0.71 -10.28 16 18 C -0.09 -2.65 4.95 -19.86 -0.10 -2.75 16 19 C -0.13 -3.82 9.05 22.27 0.20 -3.62 16 20 C -0.12 -2.86 10.05 22.27 0.22 -2.63 16 21 C -0.13 -2.44 10.05 22.27 0.22 -2.21 16 22 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 23 C -0.12 -2.93 9.67 22.27 0.22 -2.71 16 24 H 0.14 2.70 8.14 -2.39 -0.02 2.69 16 25 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 28 H 0.15 3.34 8.14 -2.39 -0.02 3.32 16 29 H 0.38 17.06 6.86 -92.71 -0.64 16.42 16 30 H 0.27 15.55 8.29 -92.71 -0.77 14.78 16 31 H 0.11 3.25 6.94 -2.91 -0.02 3.23 16 32 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.14 2.91 8.04 -2.91 -0.02 2.89 16 Total: -1.00 -86.46 307.48 2.23 -84.23 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.46 Total: 30.02 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 3.85 Total: -33.10 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -1.92 Total: -88.96 kcal Atomic # 8 Polarization: -85.97 SS G_CDS: -1.52 Total: -87.49 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: 48.72 SS G_CDS: -0.67 Total: 48.05 kcal Total: -86.46 2.23 -84.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274150763.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.296 kcal (2) G-P(sol) polarization free energy of solvation -86.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds