Wall clock time and date at job start Tue Mar 31 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00059 * 2 1 4 4 H 1.48501 * 109.47471 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47334 * 300.00440 * 3 2 1 6 6 H 1.48505 * 109.47163 * 60.00455 * 3 2 1 7 7 C 1.37879 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00324 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99882 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47071 * 183.09937 * 9 7 2 11 11 C 1.47899 * 110.99618 * 184.35139 * 10 9 7 12 12 C 1.53992 * 107.05594 * 145.84619 * 11 10 9 13 13 C 1.54598 * 105.14023 * 358.77132 * 12 11 10 14 14 H 1.09004 * 110.71849 * 96.40476 * 13 12 11 15 15 O 1.42898 * 110.72349 * 219.50727 * 13 12 11 16 16 C 1.35923 * 116.99950 * 274.97902 * 15 13 12 17 17 C 1.38722 * 120.04535 * 5.07912 * 16 15 13 18 18 C 1.38146 * 119.95651 * 179.78732 * 17 16 15 19 19 C 1.38363 * 120.04539 * 0.47020 * 18 17 16 20 20 Cl 1.73593 * 119.95896 * 179.76473 * 19 18 17 21 21 C 1.38369 * 120.08128 * 359.78591 * 19 18 17 22 22 C 1.38144 * 120.04540 * 359.97438 * 21 19 18 23 23 C 1.48533 * 110.99942 * 301.74583 * 10 9 7 24 24 H 0.96993 * 120.00115 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46746 * 63.09988 * 9 7 2 26 26 H 1.09004 * 109.46934 * 303.09948 * 9 7 2 27 27 H 1.09003 * 109.92142 * 26.49308 * 11 10 9 28 28 H 1.09004 * 109.91852 * 265.19656 * 11 10 9 29 29 H 1.09008 * 110.30951 * 239.85736 * 12 11 10 30 30 H 1.09001 * 110.30903 * 117.69318 * 12 11 10 31 31 H 1.07998 * 120.02001 * 0.03357 * 17 16 15 32 32 H 1.08001 * 119.97294 * 180.23231 * 18 17 16 33 33 H 1.08001 * 119.97855 * 179.97438 * 21 19 18 34 34 H 1.08004 * 120.01894 * 180.02562 * 22 21 19 35 35 H 1.09000 * 110.66077 * 81.84814 * 23 10 9 36 36 H 1.08996 * 110.67021 * 318.71514 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2040 -3.6147 0.0737 11 6 1.5067 -4.9150 -0.0287 12 6 2.4466 -5.8733 -0.7835 13 6 3.6952 -5.0282 -1.1254 14 1 4.4794 -5.1814 -0.3839 15 8 4.1730 -5.3394 -2.4357 16 6 5.0106 -6.4037 -2.5505 17 6 5.2817 -7.1965 -1.4449 18 6 6.1298 -8.2804 -1.5647 19 6 6.7163 -8.5698 -2.7840 20 17 7.7865 -9.9287 -2.9305 21 6 6.4512 -7.7770 -3.8867 22 6 5.5998 -6.6951 -3.7721 23 6 3.1583 -3.5762 -1.0638 24 1 -0.4850 0.8400 0.0004 25 1 0.6664 -2.5811 -0.9168 26 1 0.5837 -2.5334 0.8607 27 1 0.5759 -4.7947 -0.5830 28 1 1.3006 -5.3054 0.9679 29 1 1.9696 -6.2301 -1.6964 30 1 2.7214 -6.7137 -0.1460 31 1 4.8270 -6.9689 -0.4922 32 1 6.3382 -8.9001 -0.7050 33 1 6.9102 -8.0041 -4.8375 34 1 5.3929 -6.0768 -4.6331 35 1 3.9680 -2.8748 -0.8630 36 1 2.6437 -3.3168 -1.9890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293039550.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:29 Heat of formation + Delta-G solvation = -14.581649 kcal Electronic energy + Delta-G solvation = -19085.654537 eV Core-core repulsion = 15981.823906 eV Total energy + Delta-G solvation = -3103.830631 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45032 -38.51485 -37.08029 -36.18892 -33.05194 -31.49008 -30.65938 -29.79700 -28.06398 -26.36471 -23.59716 -22.69505 -22.25250 -20.52065 -20.19719 -18.39555 -16.73607 -16.47748 -16.17110 -15.68907 -14.90457 -14.72177 -14.45901 -14.16548 -13.77274 -13.44898 -13.18076 -13.03503 -12.82953 -12.40402 -12.10449 -11.93300 -11.49779 -11.41643 -11.13651 -11.11717 -10.95945 -10.72494 -10.57688 -10.41369 -10.31984 -9.89984 -9.33272 -9.18861 -8.52409 -8.24434 -7.51306 -6.09666 -4.11792 1.01747 1.05198 1.97723 3.11755 3.27837 3.35387 3.39869 3.43438 4.37717 4.51726 4.59663 4.73647 4.87426 4.96776 5.02592 5.13777 5.20394 5.30382 5.30544 5.48470 5.67799 5.72056 5.81664 5.95531 6.03359 6.08600 6.19287 6.27330 6.36289 6.40569 6.51401 7.04269 7.20973 7.38049 7.66082 7.87448 8.05806 8.38777 8.95055 9.53170 11.01654 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.036203 B = 0.003063 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.227262 B = 9140.532330 C = 9557.273781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.185 3.815 10 N -0.512 5.512 11 C 0.035 3.965 12 C -0.152 4.152 13 C 0.073 3.927 14 H 0.086 0.914 15 O -0.300 6.300 16 C 0.147 3.853 17 C -0.198 4.198 18 C -0.069 4.069 19 C -0.081 4.081 20 Cl -0.080 7.080 21 C -0.071 4.071 22 C -0.146 4.146 23 C 0.064 3.936 24 H 0.262 0.738 25 H -0.006 1.006 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.089 0.911 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.368 -17.455 -5.508 21.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.060 3.940 10 N -0.238 5.238 11 C -0.094 4.094 12 C -0.190 4.190 13 C 0.016 3.984 14 H 0.104 0.896 15 O -0.213 6.213 16 C 0.101 3.899 17 C -0.217 4.217 18 C -0.087 4.087 19 C -0.107 4.107 20 Cl -0.051 7.051 21 C -0.090 4.090 22 C -0.165 4.165 23 C -0.065 4.065 24 H 0.071 0.929 25 H 0.011 0.989 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.159 0.841 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.108 0.892 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.476 -17.249 -5.158 21.350 hybrid contribution -0.071 0.649 -0.526 0.838 sum 11.405 -16.601 -5.684 20.927 Atomic orbital electron populations 1.69958 1.06103 1.26841 1.50677 1.24991 0.94879 0.99437 0.95183 0.86431 0.80083 0.83291 0.77578 1.19598 1.21034 1.20925 1.21193 0.93500 0.89954 1.50609 0.91777 1.19944 0.90389 0.87371 0.96337 1.64928 1.17338 1.02171 1.39372 1.22787 0.95969 0.91124 0.99516 1.22975 0.96478 0.98560 1.00989 1.23681 0.95606 0.97625 0.81476 0.89614 1.86169 1.58841 1.43982 1.32272 1.19175 0.89556 0.87229 0.93983 1.21370 1.03440 0.97530 0.99346 1.20834 0.95140 0.96573 0.96183 1.20737 1.00283 0.93790 0.95918 1.98352 1.64325 1.44168 1.98246 1.20823 0.96948 0.93359 0.97848 1.20429 0.99781 0.99518 0.96726 1.22939 0.97466 0.91384 0.94678 0.92854 0.98868 0.94405 0.93851 0.90875 0.90721 0.91084 0.84149 0.84838 0.84497 0.84219 0.89242 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.16 8.66 -34.44 -0.30 -14.46 16 8 H 0.06 1.73 6.76 -52.49 -0.35 1.38 16 9 C 0.18 4.72 4.60 -4.97 -0.02 4.70 16 10 N -0.51 -10.73 5.35 -231.89 -1.24 -11.97 16 11 C 0.03 0.59 6.70 -2.76 -0.02 0.57 16 12 C -0.15 -2.13 6.18 -25.37 -0.16 -2.29 16 13 C 0.07 1.09 2.87 -24.87 -0.07 1.02 16 14 H 0.09 1.19 6.57 -51.93 -0.34 0.85 16 15 O -0.30 -4.45 9.90 -19.50 -0.19 -4.64 16 16 C 0.15 1.87 6.63 -39.22 -0.26 1.61 16 17 C -0.20 -2.24 8.78 -39.44 -0.35 -2.58 16 18 C -0.07 -0.70 9.82 -39.57 -0.39 -1.09 16 19 C -0.08 -0.83 6.32 -39.49 -0.25 -1.08 16 20 Cl -0.08 -0.75 28.95 -51.86 -1.50 -2.25 16 21 C -0.07 -0.70 9.82 -39.57 -0.39 -1.09 16 22 C -0.15 -1.61 9.99 -39.44 -0.39 -2.01 16 23 C 0.06 1.21 5.44 -1.90 -0.01 1.19 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H -0.01 -0.17 7.97 -51.93 -0.41 -0.59 16 26 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.04 0.77 7.66 -51.93 -0.40 0.37 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.04 8.08 -51.92 -0.42 0.62 16 30 H 0.07 0.84 7.49 -51.93 -0.39 0.45 16 31 H 0.14 1.48 5.35 -52.49 -0.28 1.20 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.09 1.74 7.30 -51.93 -0.38 1.36 16 36 H 0.05 1.11 8.02 -51.93 -0.42 0.69 16 LS Contribution 313.55 15.07 4.73 4.73 Total: -1.00 -29.18 313.55 -9.84 -39.02 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -4.64 Total: -1.63 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -2.70 Total: -14.00 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.50 Total: -37.54 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.19 Total: -4.64 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.18 -9.84 -39.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293039550.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.434 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds