Wall clock time and date at job start Tue Mar 31 2020 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99850 * 2 1 4 4 H 1.48498 * 109.47030 * 240.00366 * 3 2 1 5 5 H 1.48503 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47489 * 120.00145 * 3 2 1 7 7 C 1.37874 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00195 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47342 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00040 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.43722 * 327.55205 * 11 10 9 13 13 C 1.54816 * 110.48787 * 90.23474 * 11 10 9 14 14 C 1.54992 * 102.09394 * 97.79657 * 13 11 10 15 15 O 1.44378 * 103.49101 * 37.02314 * 14 13 11 16 16 C 1.43746 * 106.97344 * 319.94165 * 15 14 13 17 17 H 1.09005 * 110.00069 * 267.01306 * 16 15 14 18 18 C 1.50707 * 109.87732 * 145.93954 * 16 15 14 19 19 C 1.38241 * 119.98819 * 147.16899 * 18 16 15 20 20 C 1.38215 * 120.01083 * 179.97438 * 19 18 16 21 21 C 1.38349 * 119.98995 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.01575 * 179.97438 * 21 20 19 23 23 C 1.38354 * 119.96925 * 359.97438 * 21 20 19 24 24 C 1.38207 * 119.99100 * 0.02562 * 23 21 20 25 25 H 0.97000 * 120.00614 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46461 * 60.00119 * 9 7 2 27 27 H 1.08995 * 109.47126 * 300.00916 * 9 7 2 28 28 H 1.00907 * 111.00122 * 303.95492 * 10 9 7 29 29 H 1.08997 * 110.90638 * 215.99915 * 13 11 10 30 30 H 1.09001 * 110.90609 * 339.59635 * 13 11 10 31 31 H 1.08998 * 110.61901 * 155.53056 * 14 13 11 32 32 H 1.09000 * 110.61764 * 278.36590 * 14 13 11 33 33 H 1.08004 * 119.98956 * 0.24964 * 19 18 16 34 34 H 1.07996 * 120.00054 * 180.02562 * 20 19 18 35 35 H 1.08008 * 120.00263 * 179.97438 * 23 21 20 36 36 H 1.08003 * 119.99771 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5056 -4.9070 -0.0011 12 1 0.5662 -4.8309 0.5466 13 6 1.2530 -5.3857 -1.4516 14 6 2.4279 -6.3711 -1.6776 15 8 2.5763 -7.0179 -0.3954 16 6 2.3983 -6.0049 0.6088 17 1 3.3640 -5.5842 0.8893 18 6 1.7263 -6.5973 1.8207 19 6 2.0286 -6.1182 3.0818 20 6 1.4121 -6.6608 4.1935 21 6 0.4928 -7.6838 4.0442 22 17 -0.2813 -8.3663 5.4402 23 6 0.1907 -8.1628 2.7819 24 6 0.8077 -7.6195 1.6709 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8407 -3.5485 -0.7819 29 1 0.2945 -5.8986 -1.5305 30 1 1.3049 -4.5515 -2.1512 31 1 2.1752 -7.0994 -2.4481 32 1 3.3360 -5.8307 -1.9450 33 1 2.7433 -5.3168 3.1978 34 1 1.6481 -6.2862 5.1785 35 1 -0.5266 -8.9618 2.6647 36 1 0.5717 -7.9931 0.6854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298502161.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:45 Heat of formation + Delta-G solvation = -48.990765 kcal Electronic energy + Delta-G solvation = -19372.623127 eV Core-core repulsion = 16267.300405 eV Total energy + Delta-G solvation = -3105.322722 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.25977 -39.62700 -37.41430 -36.70219 -34.57560 -32.86225 -32.02439 -31.58404 -29.08430 -27.42216 -24.30232 -24.04433 -23.53003 -22.34953 -21.66273 -18.67316 -18.36463 -17.22568 -17.15136 -16.75985 -16.54092 -15.91546 -15.42358 -15.29606 -15.07378 -14.55329 -14.45900 -14.40834 -14.19680 -13.58819 -13.49033 -13.13565 -12.79010 -12.63831 -12.54340 -12.41939 -12.18482 -12.14553 -11.93051 -11.86130 -11.76770 -11.29499 -10.75696 -10.66107 -10.00688 -9.61443 -9.12796 -8.22569 -6.33778 0.09845 0.33113 1.12672 1.42234 1.45059 1.52982 2.39712 2.54907 2.90408 3.11402 3.42947 3.51721 3.83878 3.93277 3.98257 4.04112 4.10077 4.29300 4.32474 4.42016 4.53628 4.70220 4.80742 4.85164 4.94195 4.96407 5.02345 5.10496 5.23698 5.23984 5.26651 5.53326 5.59511 5.80819 5.85375 6.02932 6.39469 6.68093 6.87385 7.37395 8.88564 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016797 B = 0.004189 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.605499 B = 6681.988521 C = 7849.133693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.214 3.786 10 N -0.674 5.674 11 C 0.064 3.936 12 H 0.066 0.934 13 C -0.181 4.181 14 C 0.053 3.947 15 O -0.377 6.377 16 C 0.133 3.867 17 H 0.084 0.916 18 C -0.087 4.087 19 C -0.102 4.102 20 C -0.115 4.115 21 C -0.044 4.044 22 Cl -0.070 7.070 23 C -0.114 4.114 24 C -0.091 4.091 25 H 0.265 0.735 26 H -0.034 1.034 27 H -0.004 1.004 28 H 0.339 0.661 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.068 0.932 33 H 0.137 0.863 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 -16.892 2.872 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.086 3.914 10 N -0.304 5.304 11 C -0.048 4.048 12 H 0.084 0.916 13 C -0.220 4.220 14 C -0.023 4.023 15 O -0.297 6.297 16 C 0.074 3.926 17 H 0.102 0.898 18 C -0.087 4.087 19 C -0.121 4.121 20 C -0.133 4.133 21 C -0.071 4.071 22 Cl -0.041 7.041 23 C -0.133 4.133 24 C -0.109 4.109 25 H 0.073 0.927 26 H -0.017 1.017 27 H 0.014 0.986 28 H 0.157 0.843 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.166 0.834 35 H 0.170 0.830 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.385 -17.044 3.728 17.609 hybrid contribution -0.459 1.259 -0.741 1.531 sum 1.926 -15.785 2.987 16.180 Atomic orbital electron populations 1.70078 1.07802 1.28043 1.51413 1.25906 0.95701 1.03268 0.94576 0.85425 0.78129 0.77812 0.79179 1.18996 1.21013 1.19406 1.21507 0.93867 0.91321 1.50731 0.91567 1.19165 0.90466 0.88481 0.93241 1.60544 1.19954 1.00618 1.49299 1.22868 0.96322 0.90156 0.95414 0.91587 1.23775 1.00853 1.00557 0.96841 1.23639 0.96783 0.95730 0.86189 1.88844 1.92908 1.32439 1.15466 1.21503 0.97908 0.86458 0.86716 0.89779 1.19992 0.97586 0.97041 0.94122 1.21119 1.00118 0.99588 0.91231 1.21189 0.96169 0.95741 1.00222 1.21076 0.98798 0.98499 0.88713 1.98357 1.80143 1.84232 1.41359 1.21256 1.00795 1.01103 0.90139 1.21084 0.95059 0.95391 0.99413 0.92657 1.01655 0.98567 0.84307 0.89635 0.90746 0.86378 0.91347 0.84492 0.83446 0.83027 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 2 C 0.00 0.22 5.46 84.65 0.46 0.69 16 3 Si 0.97 43.37 29.54 68.60 2.03 45.39 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.54 -29.66 9.32 25.60 0.24 -29.42 16 8 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.21 11.06 5.30 85.56 0.45 11.51 16 10 N -0.67 -27.22 6.17 -490.49 -3.03 -30.25 16 11 C 0.06 2.15 2.99 45.91 0.14 2.29 16 12 H 0.07 2.51 7.37 -2.39 -0.02 2.49 16 13 C -0.18 -5.02 6.63 31.90 0.21 -4.81 16 14 C 0.05 1.21 7.72 72.66 0.56 1.77 16 15 O -0.38 -10.24 10.28 -148.98 -1.53 -11.77 16 16 C 0.13 3.90 3.45 30.22 0.10 4.01 16 17 H 0.08 2.59 7.86 -2.38 -0.02 2.57 16 18 C -0.09 -2.45 4.80 -19.86 -0.10 -2.55 16 19 C -0.10 -2.80 9.69 22.26 0.22 -2.58 16 20 C -0.11 -2.82 9.83 22.29 0.22 -2.61 16 21 C -0.04 -1.06 6.32 22.32 0.14 -0.92 16 22 Cl -0.07 -1.48 28.96 -2.72 -0.08 -1.56 16 23 C -0.11 -2.61 9.83 22.29 0.22 -2.39 16 24 C -0.09 -2.30 9.36 22.26 0.21 -2.09 16 25 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 26 H -0.03 -1.89 8.14 -2.39 -0.02 -1.91 16 27 H 0.00 -0.22 8.08 -2.39 -0.02 -0.24 16 28 H 0.34 12.82 8.38 -89.69 -0.75 12.07 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 2.22 7.97 -2.39 -0.02 2.20 16 31 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 34 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.14 3.26 7.58 -2.91 -0.02 3.23 16 Total: -1.00 -61.90 320.35 1.08 -60.82 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.33 Total: 19.74 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 3.08 Total: -27.10 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -2.74 Total: -85.51 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -1.53 Total: -11.77 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -61.90 1.08 -60.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298502161.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.833 kcal (2) G-P(sol) polarization free energy of solvation -61.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds