Wall clock time and date at job start Tue Mar 31 2020 05:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00316 * 2 1 4 4 H 1.48500 * 109.47412 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47460 * 300.00079 * 3 2 1 6 6 H 1.48508 * 109.47084 * 59.99838 * 3 2 1 7 7 C 1.37879 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99651 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00264 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47311 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00148 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.56227 * 327.67928 * 11 10 9 13 13 C 1.54683 * 110.48756 * 90.46866 * 11 10 9 14 14 C 1.54485 * 104.07970 * 118.72269 * 13 11 10 15 15 O 1.44428 * 104.80137 * 335.93153 * 14 13 11 16 16 C 1.44425 * 105.27550 * 40.50538 * 15 14 13 17 17 H 1.09008 * 110.37063 * 78.43132 * 16 15 14 18 18 C 1.50699 * 110.37389 * 200.65833 * 16 15 14 19 19 C 1.38238 * 119.98695 * 37.07117 * 18 16 15 20 20 C 1.38214 * 120.01487 * 179.97438 * 19 18 16 21 21 C 1.38355 * 119.98457 * 0.02562 * 20 19 18 22 22 Cl 1.73605 * 120.00993 * 179.97438 * 21 20 19 23 23 C 1.38352 * 119.97427 * 0.02562 * 21 20 19 24 24 C 1.38210 * 119.98717 * 359.97438 * 23 21 20 25 25 H 0.96996 * 119.99799 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47205 * 59.99850 * 9 7 2 27 27 H 1.09001 * 109.47292 * 299.99808 * 9 7 2 28 28 H 1.00894 * 110.99975 * 56.03994 * 10 9 7 29 29 H 1.09005 * 110.58671 * 0.03678 * 13 11 10 30 30 H 1.09001 * 110.54627 * 237.39048 * 13 11 10 31 31 H 1.08994 * 110.37339 * 217.09511 * 14 13 11 32 32 H 1.08997 * 110.46361 * 94.80402 * 14 13 11 33 33 H 1.08001 * 119.99123 * 359.97438 * 19 18 16 34 34 H 1.08000 * 120.00940 * 180.27418 * 20 19 18 35 35 H 1.08003 * 120.00227 * 180.02562 * 23 21 20 36 36 H 1.07996 * 119.99586 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2056 -3.6158 -0.0015 11 6 1.5052 -4.9071 -0.0020 12 1 0.5643 -4.8326 0.5433 13 6 1.2581 -5.3885 -1.4511 14 6 2.0297 -6.7239 -1.5402 15 8 3.0485 -6.6301 -0.5208 16 6 2.3996 -6.0081 0.6096 17 1 1.7914 -6.7365 1.1460 18 6 3.4235 -5.3996 1.5328 19 6 4.5517 -4.7948 1.0108 20 6 5.4909 -4.2361 1.8569 21 6 5.3020 -4.2826 3.2267 22 17 6.4816 -3.5815 4.2902 23 6 4.1732 -4.8889 3.7486 24 6 3.2348 -5.4473 2.9015 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5563 -0.8919 27 1 0.6240 -2.5575 0.8880 28 1 2.8398 -3.5491 0.7803 29 1 1.6559 -4.6691 -2.1670 30 1 0.1942 -5.5498 -1.6244 31 1 2.4860 -6.8335 -2.5239 32 1 1.3644 -7.5627 -1.3357 33 1 4.6992 -4.7590 -0.0585 34 1 6.3701 -3.7597 1.4488 35 1 4.0251 -4.9251 4.8179 36 1 2.3538 -5.9210 3.3087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298502166.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:49 Heat of formation + Delta-G solvation = -41.990304 kcal Electronic energy + Delta-G solvation = -19885.010181 eV Core-core repulsion = 16779.991021 eV Total energy + Delta-G solvation = -3105.019159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36128 -39.51125 -37.41964 -36.60369 -34.56103 -32.80297 -32.11902 -31.58222 -29.02435 -27.51712 -24.35482 -23.97282 -23.65620 -22.38348 -21.09251 -18.67460 -18.23439 -17.47578 -17.03766 -16.73174 -16.53303 -16.33593 -15.63351 -15.33346 -14.80034 -14.50583 -14.39210 -14.36850 -14.22315 -13.66659 -13.15523 -12.95368 -12.81948 -12.67213 -12.49310 -12.44967 -12.19099 -12.10036 -11.83797 -11.78182 -11.74609 -11.25692 -10.72687 -10.66585 -9.96613 -9.56702 -9.10795 -8.24384 -6.34437 0.07788 0.34748 1.13743 1.38235 1.38850 1.52560 2.37873 2.54184 2.99034 3.09294 3.52484 3.60914 3.73387 3.84895 3.97550 4.16501 4.23110 4.30641 4.38878 4.45871 4.57768 4.67054 4.71035 4.86537 4.97732 5.02936 5.07238 5.18344 5.24235 5.27772 5.30247 5.50415 5.60300 5.79892 5.88703 6.04405 6.44283 6.73297 6.88430 7.36390 8.87362 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.007132 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.071535 B = 3925.035867 C = 6046.510434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.212 3.788 10 N -0.678 5.678 11 C 0.050 3.950 12 H 0.048 0.952 13 C -0.144 4.144 14 C 0.053 3.947 15 O -0.377 6.377 16 C 0.122 3.878 17 H 0.105 0.895 18 C -0.097 4.097 19 C -0.074 4.074 20 C -0.122 4.122 21 C -0.039 4.039 22 Cl -0.071 7.071 23 C -0.116 4.116 24 C -0.099 4.099 25 H 0.265 0.735 26 H 0.002 0.998 27 H -0.042 1.042 28 H 0.337 0.663 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.046 -14.187 4.836 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.570 4.570 8 H 0.077 0.923 9 C 0.084 3.916 10 N -0.314 5.314 11 C -0.061 4.061 12 H 0.065 0.935 13 C -0.183 4.183 14 C -0.023 4.023 15 O -0.296 6.296 16 C 0.064 3.936 17 H 0.122 0.878 18 C -0.097 4.097 19 C -0.092 4.092 20 C -0.141 4.141 21 C -0.065 4.065 22 Cl -0.042 7.042 23 C -0.134 4.134 24 C -0.118 4.118 25 H 0.074 0.926 26 H 0.020 0.980 27 H -0.025 1.025 28 H 0.160 0.840 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.173 0.827 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.324 -14.070 4.241 16.419 hybrid contribution -0.408 1.334 0.786 1.601 sum 6.916 -12.736 5.027 15.339 Atomic orbital electron populations 1.70080 1.07619 1.27853 1.51637 1.25862 0.95739 1.03062 0.94646 0.85390 0.78999 0.78741 0.77865 1.18887 1.20193 1.20271 1.21512 0.93542 0.91558 1.50375 0.92326 1.19199 0.90539 0.88828 0.93004 1.60898 1.19903 1.00653 1.49926 1.22989 0.95617 0.90719 0.96795 0.93451 1.23049 1.01333 0.97873 0.96001 1.23511 0.90108 0.96037 0.92689 1.89111 1.35083 1.80850 1.24587 1.21996 0.91112 0.93055 0.87396 0.87781 1.19816 0.96095 0.99627 0.94205 1.21015 0.92637 0.95075 1.00494 1.21230 1.00901 1.00547 0.91444 1.21104 0.93186 1.01012 0.91238 1.98355 1.57424 1.83031 1.65374 1.21226 0.92423 0.98107 1.01645 1.21200 0.99719 0.99254 0.91595 0.92622 0.98012 1.02463 0.84025 0.91676 0.89773 0.87810 0.89838 0.85176 0.84025 0.82725 0.82627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 2 C 0.01 0.30 5.46 84.65 0.46 0.77 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.53 -30.72 9.32 25.60 0.24 -30.48 16 8 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 9 C 0.21 11.40 5.30 85.55 0.45 11.85 16 10 N -0.68 -29.27 5.81 -490.03 -2.85 -32.12 16 11 C 0.05 1.71 3.35 45.99 0.15 1.86 16 12 H 0.05 1.68 7.83 -2.39 -0.02 1.67 16 13 C -0.14 -4.30 6.88 31.67 0.22 -4.08 16 14 C 0.05 1.24 7.63 72.49 0.55 1.79 16 15 O -0.38 -10.78 10.62 -148.98 -1.58 -12.36 16 16 C 0.12 3.43 3.47 30.35 0.11 3.53 16 17 H 0.10 2.33 8.05 -2.38 -0.02 2.31 16 18 C -0.10 -2.80 3.84 -19.86 -0.08 -2.88 16 19 C -0.07 -2.26 7.26 22.26 0.16 -2.10 16 20 C -0.12 -3.49 9.83 22.29 0.22 -3.27 16 21 C -0.04 -1.04 6.32 22.32 0.14 -0.90 16 22 Cl -0.07 -1.73 28.96 -2.72 -0.08 -1.81 16 23 C -0.12 -2.81 9.83 22.29 0.22 -2.59 16 24 C -0.10 -2.47 9.68 22.26 0.22 -2.25 16 25 H 0.26 14.99 8.31 -92.71 -0.77 14.21 16 26 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 27 H -0.04 -2.45 8.08 -2.39 -0.02 -2.47 16 28 H 0.34 14.26 4.86 -89.70 -0.44 13.83 16 29 H 0.06 2.28 7.97 -2.38 -0.02 2.26 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.13 4.27 7.72 -2.91 -0.02 4.24 16 34 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 35 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 36 H 0.16 2.95 8.05 -2.91 -0.02 2.93 16 Total: -1.00 -65.71 315.07 1.51 -64.20 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.65 Total: 20.00 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 3.06 Total: -28.76 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -2.56 Total: -88.17 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -1.58 Total: -12.36 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -65.71 1.51 -64.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298502166.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.210 kcal (2) G-P(sol) polarization free energy of solvation -65.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds