Wall clock time and date at job start Tue Mar 31 2020 05:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86796 * 119.99747 * 2 1 4 4 H 1.48506 * 109.46918 * 90.00094 * 3 2 1 5 5 H 1.48496 * 109.47358 * 210.00023 * 3 2 1 6 6 H 1.48500 * 109.47349 * 330.00591 * 3 2 1 7 7 C 1.38944 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99819 * 202.13092 * 7 2 1 9 9 N 1.37101 * 120.00270 * 22.12214 * 7 2 1 10 10 C 1.34772 * 119.99804 * 43.03028 * 9 7 2 11 11 O 1.21298 * 119.99813 * 4.98181 * 10 9 7 12 12 C 1.50700 * 120.00439 * 184.97620 * 10 9 7 13 13 F 1.39904 * 109.46999 * 282.02607 * 12 10 9 14 14 F 1.39904 * 109.46656 * 42.01932 * 12 10 9 15 15 C 1.50692 * 109.47518 * 162.01788 * 12 10 9 16 16 C 1.38233 * 120.00189 * 269.73160 * 15 12 10 17 17 C 1.38241 * 120.00230 * 179.76650 * 16 15 12 18 18 C 1.38238 * 119.99462 * 0.50370 * 17 16 15 19 19 C 1.38231 * 120.00009 * 359.74824 * 18 17 16 20 20 C 1.38228 * 120.00215 * 0.02562 * 19 18 17 21 21 C 1.46500 * 119.99989 * 223.03430 * 9 7 2 22 22 C 1.52997 * 117.50256 * 2.75075 * 21 9 7 23 23 C 1.52995 * 60.00234 * 252.51102 * 22 21 9 24 24 H 0.97006 * 119.99388 * 181.26614 * 1 2 3 25 25 H 1.07998 * 120.00295 * 359.97438 * 16 15 12 26 26 H 1.07997 * 120.00279 * 180.22999 * 17 16 15 27 27 H 1.07997 * 119.99325 * 179.72368 * 18 17 16 28 28 H 1.08004 * 119.99425 * 179.97438 * 19 18 17 29 29 H 1.08007 * 119.99822 * 179.97438 * 20 19 18 30 30 H 1.09003 * 115.54586 * 148.46383 * 21 9 7 31 31 H 1.09006 * 117.49766 * 0.02562 * 22 21 9 32 32 H 1.09004 * 117.49817 * 145.01704 * 22 21 9 33 33 H 1.09000 * 117.49811 * 252.51086 * 23 22 21 34 34 H 1.08999 * 117.51617 * 107.47503 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5456 1.4403 -0.7000 6 1 1.4455 2.6527 -0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0293 -1.2378 0.3518 9 7 1.3992 -2.3467 -0.4482 10 6 0.6476 -2.3161 -1.5664 11 8 0.5835 -1.3004 -2.2264 12 6 -0.1131 -3.5437 -1.9969 13 9 0.7649 -4.4467 -2.6061 14 9 -0.6988 -4.1456 -0.8780 15 6 -1.1887 -3.1504 -2.9763 16 6 -2.4506 -2.8177 -2.5205 17 6 -3.4359 -2.4523 -3.4185 18 6 -3.1622 -2.4296 -4.7734 19 6 -1.9019 -2.7674 -5.2296 20 6 -0.9153 -3.1283 -4.3312 21 6 1.5647 -3.6018 0.2891 22 6 2.3764 -3.5581 1.5853 23 6 2.9659 -4.2146 0.3354 24 1 -0.4849 -0.8399 0.0186 25 1 -2.6658 -2.8400 -1.4624 26 1 -4.4207 -2.1887 -3.0621 27 1 -3.9333 -2.1484 -5.4753 28 1 -1.6883 -2.7500 -6.2882 29 1 0.0694 -3.3925 -4.6878 30 1 0.7173 -4.2862 0.2484 31 1 2.7870 -2.5953 1.8898 32 1 2.0629 -4.2136 2.3978 33 1 3.0403 -5.3020 0.3255 34 1 3.7645 -3.6839 -0.1831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299443516.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:49 Heat of formation + Delta-G solvation = -57.403015 kcal Electronic energy + Delta-G solvation = -22910.507887 eV Core-core repulsion = 19253.023702 eV Total energy + Delta-G solvation = -3657.484185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.78986 -46.74554 -39.07218 -38.54355 -36.35896 -33.26649 -31.62912 -30.96467 -30.70777 -26.89622 -24.65333 -22.40033 -22.09407 -21.70820 -21.19845 -19.93017 -17.93958 -17.42129 -17.07316 -16.71192 -15.79153 -15.09690 -14.50760 -14.46356 -14.36567 -14.01557 -13.76582 -13.49520 -13.39520 -13.26705 -12.90366 -12.73404 -12.36872 -12.27617 -11.62825 -11.46942 -11.03270 -10.91646 -10.85341 -10.77204 -10.30543 -10.16759 -9.91492 -9.78150 -8.89139 -8.70585 -8.69866 -8.37244 -7.50467 -6.62260 -4.08745 1.41785 1.61672 3.27886 3.40615 3.49799 3.58446 3.72605 3.90800 4.27143 4.43096 4.58418 4.67066 4.94166 5.12135 5.15930 5.27616 5.31812 5.41249 5.57454 5.64091 5.66283 5.77432 5.83996 6.02736 6.15571 6.22043 6.32023 6.57413 6.63640 6.65009 6.70220 6.81772 7.12414 7.67624 8.17274 8.49461 8.84473 9.31773 9.71789 10.70193 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.008086 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.782534 B = 3461.996252 C = 4489.062538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.037 3.963 3 Si 1.083 2.917 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.279 1.279 7 C -0.425 4.425 8 H 0.080 0.920 9 N -0.402 5.402 10 C 0.421 3.579 11 O -0.506 6.506 12 C 0.328 3.672 13 F -0.188 7.188 14 F -0.190 7.190 15 C -0.119 4.119 16 C -0.079 4.079 17 C -0.123 4.123 18 C -0.109 4.109 19 C -0.125 4.125 20 C -0.074 4.074 21 C 0.034 3.966 22 C -0.167 4.167 23 C -0.197 4.197 24 H 0.272 0.728 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 -7.545 -4.019 9.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.177 4.177 3 Si 0.909 3.091 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.098 0.902 9 N -0.121 5.121 10 C 0.205 3.795 11 O -0.384 6.384 12 C 0.287 3.713 13 F -0.169 7.169 14 F -0.171 7.171 15 C -0.121 4.121 16 C -0.097 4.097 17 C -0.141 4.141 18 C -0.127 4.127 19 C -0.143 4.143 20 C -0.092 4.092 21 C -0.071 4.071 22 C -0.205 4.205 23 C -0.236 4.236 24 H 0.083 0.917 25 H 0.145 0.855 26 H 0.144 0.856 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.412 -5.414 -4.350 7.738 hybrid contribution 0.249 -2.031 0.199 2.056 sum -3.164 -7.444 -4.150 9.091 Atomic orbital electron populations 1.70592 1.07422 1.31132 1.37394 1.26380 0.95998 1.02560 0.92752 0.83314 0.75006 0.74222 0.76513 1.21374 1.20956 1.20428 1.19958 0.98886 0.86231 1.49988 0.90192 1.42957 1.43534 1.07186 1.18399 1.19931 0.87442 0.88421 0.83694 1.90672 1.63922 1.30755 1.53010 1.20234 0.85330 0.85368 0.80329 1.92994 1.70621 1.69810 1.83473 1.92831 1.84971 1.85548 1.53703 1.19833 0.94007 1.04109 0.94117 1.20900 0.91914 0.96454 1.00418 1.21041 0.99234 1.00562 0.93215 1.21185 0.96851 0.98984 0.95674 1.21032 0.93291 1.00547 0.99432 1.20846 0.99536 0.97083 0.91759 1.22594 0.95063 0.90977 0.98459 1.23077 1.03850 1.02811 0.90727 1.23246 0.98431 0.99078 1.02820 0.91704 0.85460 0.85635 0.85933 0.85698 0.85530 0.85364 0.87319 0.89428 0.89377 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.94 12.56 55.50 0.70 -24.25 16 2 C 0.04 1.03 4.26 -17.47 -0.07 0.96 16 3 Si 1.08 25.20 29.97 -169.99 -5.10 20.10 16 4 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.42 -11.63 7.92 -14.93 -0.12 -11.75 16 8 H 0.08 2.12 7.20 -52.49 -0.38 1.75 16 9 N -0.40 -10.31 2.61 -107.73 -0.28 -10.59 16 10 C 0.42 10.95 5.64 -10.99 -0.06 10.89 16 11 O -0.51 -14.83 14.22 5.54 0.08 -14.75 16 12 C 0.33 7.13 1.64 -29.04 -0.05 7.09 16 13 F -0.19 -3.89 16.17 2.25 0.04 -3.86 16 14 F -0.19 -3.90 13.07 2.25 0.03 -3.87 16 15 C -0.12 -2.39 4.31 -104.63 -0.45 -2.84 16 16 C -0.08 -1.45 9.40 -39.58 -0.37 -1.82 16 17 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 18 C -0.11 -1.52 10.05 -39.58 -0.40 -1.92 16 19 C -0.13 -1.86 10.05 -39.59 -0.40 -2.26 16 20 C -0.07 -1.33 9.40 -39.59 -0.37 -1.70 16 21 C 0.03 0.73 5.76 -67.93 -0.39 0.33 16 22 C -0.17 -3.12 9.79 -26.74 -0.26 -3.38 16 23 C -0.20 -3.60 10.36 -26.73 -0.28 -3.88 16 24 H 0.27 8.26 7.12 -40.82 -0.29 7.97 16 25 H 0.13 2.30 7.60 -52.49 -0.40 1.90 16 26 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 27 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 28 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 29 H 0.13 2.17 7.60 -52.48 -0.40 1.77 16 30 H 0.13 2.62 5.14 -51.93 -0.27 2.35 16 31 H 0.11 2.19 6.68 -51.93 -0.35 1.85 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 298.49 15.07 4.50 4.50 Total: -1.00 -32.30 298.49 -7.07 -39.37 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -3.41 Total: 5.89 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.62 Total: -12.55 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.42 Total: -34.84 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.08 Total: -14.75 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 0.07 Total: -7.73 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.10 Total: 20.10 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.30 -7.07 -39.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299443516.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.033 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds