Wall clock time and date at job start Tue Mar 31 2020 05:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86796 * 119.99747 * 2 1 4 4 H 1.48506 * 109.46918 * 90.00094 * 3 2 1 5 5 H 1.48496 * 109.47358 * 210.00023 * 3 2 1 6 6 H 1.48500 * 109.47349 * 330.00591 * 3 2 1 7 7 C 1.38944 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99819 * 202.13092 * 7 2 1 9 9 N 1.37101 * 120.00270 * 22.12214 * 7 2 1 10 10 C 1.34772 * 119.99804 * 43.03028 * 9 7 2 11 11 O 1.21298 * 119.99813 * 4.98181 * 10 9 7 12 12 C 1.50700 * 120.00439 * 184.97620 * 10 9 7 13 13 F 1.39904 * 109.46999 * 282.02607 * 12 10 9 14 14 F 1.39904 * 109.46656 * 42.01932 * 12 10 9 15 15 C 1.50692 * 109.47518 * 162.01788 * 12 10 9 16 16 C 1.38233 * 120.00189 * 269.73160 * 15 12 10 17 17 C 1.38241 * 120.00230 * 179.76650 * 16 15 12 18 18 C 1.38238 * 119.99462 * 0.50370 * 17 16 15 19 19 C 1.38231 * 120.00009 * 359.74824 * 18 17 16 20 20 C 1.38228 * 120.00215 * 0.02562 * 19 18 17 21 21 C 1.46500 * 119.99989 * 223.03430 * 9 7 2 22 22 C 1.52997 * 117.50256 * 2.75075 * 21 9 7 23 23 C 1.52995 * 60.00234 * 252.51102 * 22 21 9 24 24 H 0.97006 * 119.99388 * 181.26614 * 1 2 3 25 25 H 1.07998 * 120.00295 * 359.97438 * 16 15 12 26 26 H 1.07997 * 120.00279 * 180.22999 * 17 16 15 27 27 H 1.07997 * 119.99325 * 179.72368 * 18 17 16 28 28 H 1.08004 * 119.99425 * 179.97438 * 19 18 17 29 29 H 1.08007 * 119.99822 * 179.97438 * 20 19 18 30 30 H 1.09003 * 115.54586 * 148.46383 * 21 9 7 31 31 H 1.09006 * 117.49766 * 0.02562 * 22 21 9 32 32 H 1.09004 * 117.49817 * 145.01704 * 22 21 9 33 33 H 1.09000 * 117.49811 * 252.51086 * 23 22 21 34 34 H 1.08999 * 117.51617 * 107.47503 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5456 1.4403 -0.7000 6 1 1.4455 2.6527 -0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0293 -1.2378 0.3518 9 7 1.3992 -2.3467 -0.4482 10 6 0.6476 -2.3161 -1.5664 11 8 0.5835 -1.3004 -2.2264 12 6 -0.1131 -3.5437 -1.9969 13 9 0.7649 -4.4467 -2.6061 14 9 -0.6988 -4.1456 -0.8780 15 6 -1.1887 -3.1504 -2.9763 16 6 -2.4506 -2.8177 -2.5205 17 6 -3.4359 -2.4523 -3.4185 18 6 -3.1622 -2.4296 -4.7734 19 6 -1.9019 -2.7674 -5.2296 20 6 -0.9153 -3.1283 -4.3312 21 6 1.5647 -3.6018 0.2891 22 6 2.3764 -3.5581 1.5853 23 6 2.9659 -4.2146 0.3354 24 1 -0.4849 -0.8399 0.0186 25 1 -2.6658 -2.8400 -1.4624 26 1 -4.4207 -2.1887 -3.0621 27 1 -3.9333 -2.1484 -5.4753 28 1 -1.6883 -2.7500 -6.2882 29 1 0.0694 -3.3925 -4.6878 30 1 0.7173 -4.2862 0.2484 31 1 2.7870 -2.5953 1.8898 32 1 2.0629 -4.2136 2.3978 33 1 3.0403 -5.3020 0.3255 34 1 3.7645 -3.6839 -0.1831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299443516.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:48 Heat of formation + Delta-G solvation = -75.740494 kcal Electronic energy + Delta-G solvation = -22911.303060 eV Core-core repulsion = 19253.023702 eV Total energy + Delta-G solvation = -3658.279358 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.48541 -48.43486 -40.80032 -40.01455 -38.13338 -35.23215 -33.12554 -32.85680 -31.95598 -28.64419 -26.54363 -23.73501 -23.65420 -23.19917 -22.89056 -21.67875 -19.80443 -18.99751 -18.74681 -18.53852 -17.23044 -16.73357 -16.45079 -15.94761 -15.76368 -15.65979 -15.55547 -15.25233 -15.06497 -14.83651 -14.42486 -14.28920 -13.88000 -13.70627 -13.65499 -13.10809 -12.76433 -12.39701 -12.24883 -12.13657 -12.06707 -11.98956 -11.88558 -11.42127 -10.82534 -10.37653 -9.99610 -9.96563 -9.51320 -8.78939 -6.25324 0.11495 0.35851 1.37296 1.50115 1.64540 1.75238 1.97892 2.44321 2.55848 2.80727 2.92495 2.93662 3.15042 3.50097 3.56193 3.93959 3.99139 4.00510 4.08061 4.16020 4.19813 4.46363 4.55123 4.71554 4.76907 4.82263 4.98996 5.06326 5.29192 5.36826 5.37535 5.43720 5.57092 5.93192 5.97622 6.47897 6.80501 7.24461 7.70255 8.51012 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.008086 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.782534 B = 3461.996252 C = 4489.062538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C -0.009 4.009 3 Si 1.124 2.876 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.289 1.289 7 C -0.435 4.435 8 H 0.083 0.917 9 N -0.415 5.415 10 C 0.411 3.589 11 O -0.551 6.551 12 C 0.339 3.661 13 F -0.184 7.184 14 F -0.186 7.186 15 C -0.153 4.153 16 C -0.105 4.105 17 C -0.122 4.122 18 C -0.098 4.098 19 C -0.120 4.120 20 C -0.096 4.096 21 C -0.005 4.005 22 C -0.154 4.154 23 C -0.174 4.174 24 H 0.255 0.745 25 H 0.116 0.884 26 H 0.156 0.844 27 H 0.168 0.832 28 H 0.162 0.838 29 H 0.123 0.877 30 H 0.136 0.864 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.527 -8.112 -4.756 10.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.216 4.216 3 Si 0.944 3.056 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.215 1.215 7 C -0.561 4.561 8 H 0.100 0.900 9 N -0.133 5.133 10 C 0.196 3.804 11 O -0.432 6.432 12 C 0.299 3.701 13 F -0.165 7.165 14 F -0.167 7.167 15 C -0.154 4.154 16 C -0.123 4.123 17 C -0.139 4.139 18 C -0.116 4.116 19 C -0.138 4.138 20 C -0.114 4.114 21 C -0.109 4.109 22 C -0.191 4.191 23 C -0.212 4.212 24 H 0.065 0.935 25 H 0.134 0.866 26 H 0.174 0.826 27 H 0.186 0.814 28 H 0.179 0.821 29 H 0.141 0.859 30 H 0.153 0.847 31 H 0.108 0.892 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.734 -6.030 -5.048 8.706 hybrid contribution 0.364 -1.943 0.392 2.015 sum -3.370 -7.973 -4.656 9.829 Atomic orbital electron populations 1.70708 1.08394 1.29989 1.40494 1.27757 0.96068 1.05955 0.91811 0.82841 0.74093 0.70567 0.78099 1.18257 1.19800 1.21456 1.20171 0.99131 0.87240 1.49542 0.89967 1.43209 1.43147 1.08234 1.18759 1.20603 0.87178 0.89301 0.83332 1.90609 1.65391 1.32742 1.54418 1.19817 0.85574 0.83803 0.80904 1.92986 1.70748 1.69422 1.83349 1.92824 1.84793 1.85264 1.53788 1.19891 0.94075 1.06781 0.94634 1.21033 0.92489 0.98082 1.00711 1.21464 0.99700 0.99159 0.93625 1.21733 0.97436 0.96620 0.95765 1.21498 0.92846 0.98668 1.00742 1.21042 1.00546 0.98289 0.91528 1.22863 0.97252 0.89959 1.00838 1.23152 1.02171 1.02731 0.91050 1.23297 0.95429 1.00925 1.01567 0.93520 0.86614 0.82594 0.81411 0.82070 0.85877 0.84718 0.89162 0.85902 0.85719 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -53.41 12.56 21.66 0.27 -53.14 16 2 C -0.01 -0.51 4.26 84.92 0.36 -0.15 16 3 Si 1.12 51.24 29.97 68.60 2.06 53.29 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.43 -24.33 7.92 84.04 0.67 -23.67 16 8 H 0.08 4.44 7.20 -2.91 -0.02 4.41 16 9 N -0.41 -21.86 2.61 -613.13 -1.60 -23.46 16 10 C 0.41 22.15 5.64 87.66 0.49 22.64 16 11 O -0.55 -33.64 14.22 -3.09 -0.04 -33.69 16 12 C 0.34 15.22 1.64 29.10 0.05 15.27 16 13 F -0.18 -7.77 16.17 44.97 0.73 -7.04 16 14 F -0.19 -7.88 13.07 44.97 0.59 -7.30 16 15 C -0.15 -6.26 4.31 -19.87 -0.09 -6.34 16 16 C -0.10 -3.91 9.40 22.27 0.21 -3.70 16 17 C -0.12 -3.49 10.05 22.27 0.22 -3.27 16 18 C -0.10 -2.40 10.05 22.27 0.22 -2.18 16 19 C -0.12 -3.27 10.05 22.27 0.22 -3.05 16 20 C -0.10 -3.43 9.40 22.27 0.21 -3.22 16 21 C -0.01 -0.22 5.76 44.99 0.26 0.03 16 22 C -0.15 -5.52 9.79 30.59 0.30 -5.22 16 23 C -0.17 -6.07 10.36 30.59 0.32 -5.76 16 24 H 0.25 16.24 7.12 -92.70 -0.66 15.58 16 25 H 0.12 4.40 7.60 -2.91 -0.02 4.38 16 26 H 0.16 3.41 8.06 -2.91 -0.02 3.38 16 27 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 28 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.12 4.31 7.60 -2.91 -0.02 4.29 16 30 H 0.14 5.50 5.14 -2.39 -0.01 5.49 16 31 H 0.09 3.60 6.68 -2.38 -0.02 3.59 16 32 H 0.12 3.52 8.14 -2.38 -0.02 3.50 16 33 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 34 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -73.55 298.49 6.68 -66.87 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 1.24 Total: 23.08 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 3.45 Total: -18.61 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -1.33 Total: -76.60 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.04 Total: -33.69 kcal Atomic # 9 Polarization: -15.65 SS G_CDS: 1.31 Total: -14.34 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.06 Total: 53.29 kcal Total: -73.55 6.68 -66.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299443516.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.871 kcal (2) G-P(sol) polarization free energy of solvation -73.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds