Wall clock time and date at job start Tue Mar 31 2020 05:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00185 * 2 1 4 4 H 1.48503 * 109.46955 * 239.99812 * 3 2 1 5 5 H 1.48500 * 109.47184 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47299 * 119.99777 * 3 2 1 7 7 C 1.38820 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99621 * 200.59350 * 7 2 1 9 9 N 1.36932 * 119.99894 * 20.59259 * 7 2 1 10 10 C 1.46501 * 119.99899 * 38.12202 * 9 7 2 11 11 C 1.53002 * 109.47195 * 89.99920 * 10 9 7 12 12 H 1.08996 * 109.46722 * 305.00103 * 11 10 9 13 13 O 1.42899 * 109.46744 * 64.99856 * 11 10 9 14 14 C 1.50695 * 109.47005 * 184.99759 * 11 10 9 15 15 C 1.38241 * 120.00921 * 264.99795 * 14 11 10 16 16 C 1.38217 * 120.01446 * 179.97438 * 15 14 11 17 17 C 1.38262 * 120.02881 * 0.03837 * 16 15 14 18 18 C 1.38200 * 120.01175 * 359.97438 * 17 16 15 19 19 C 1.38336 * 120.00653 * 84.72979 * 14 11 10 20 20 Cl 1.73599 * 120.01071 * 359.97438 * 19 14 11 21 21 C 1.46500 * 119.99991 * 218.12382 * 9 7 2 22 22 C 1.52996 * 117.50159 * 12.55328 * 21 9 7 23 23 C 1.53004 * 117.49691 * 303.89654 * 21 9 7 24 24 H 0.97000 * 119.99423 * 354.96009 * 1 2 3 25 25 H 1.09002 * 109.47236 * 330.00042 * 10 9 7 26 26 H 1.08996 * 109.46980 * 210.00085 * 10 9 7 27 27 H 0.96698 * 114.00313 * 60.00173 * 13 11 10 28 28 H 1.07998 * 119.98988 * 0.02562 * 15 14 11 29 29 H 1.07994 * 119.98436 * 180.02562 * 16 15 14 30 30 H 1.07997 * 119.99780 * 179.97438 * 17 16 15 31 31 H 1.07998 * 120.00520 * 180.02562 * 18 17 16 32 32 H 1.08994 * 115.55182 * 158.23364 * 21 9 7 33 33 H 1.09009 * 117.49395 * 0.02562 * 22 21 9 34 34 H 1.08998 * 117.50010 * 145.02190 * 22 21 9 35 35 H 1.08996 * 117.49993 * 214.98706 * 23 21 9 36 36 H 1.08999 * 117.49821 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0385 -1.2319 0.3295 9 7 1.3912 -2.3504 -0.4160 10 6 0.4618 -2.3122 -1.5479 11 6 1.2305 -2.5592 -2.8475 12 1 2.0455 -1.8401 -2.9298 13 8 1.7638 -3.8849 -2.8408 14 6 0.2984 -2.3987 -4.0207 15 6 -0.3243 -3.5061 -4.5656 16 6 -1.1796 -3.3589 -5.6413 17 6 -1.4125 -2.1043 -6.1735 18 6 -0.7904 -0.9964 -5.6298 19 6 0.0613 -1.1424 -4.5491 20 17 0.8369 0.2497 -3.8604 21 6 1.6581 -3.6169 0.2701 22 6 2.3945 -3.5531 1.6097 23 6 3.1147 -4.0759 0.3644 24 1 -0.4849 0.8368 0.0738 25 1 -0.0191 -1.3349 -1.5904 26 1 -0.2964 -3.0850 -1.4217 27 1 1.0935 -4.5782 -2.7696 28 1 -0.1429 -4.4863 -4.1502 29 1 -1.6661 -4.2243 -6.0664 30 1 -2.0806 -1.9899 -7.0143 31 1 -0.9727 -0.0164 -6.0453 32 1 0.8949 -4.3859 0.1515 33 1 2.6799 -2.5686 1.9807 34 1 2.1157 -4.2803 2.3724 35 1 3.3095 -5.1469 0.3081 36 1 3.8741 -3.4358 -0.0845 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299503383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:29 Heat of formation + Delta-G solvation = 18.007322 kcal Electronic energy + Delta-G solvation = -20360.186929 eV Core-core repulsion = 17257.769462 eV Total energy + Delta-G solvation = -3102.417467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.44519 -37.24600 -36.03016 -35.89045 -33.31640 -31.39299 -30.57406 -30.30706 -27.04707 -24.54369 -22.57545 -22.39274 -21.24963 -20.60024 -19.81445 -17.52720 -16.43163 -15.75561 -15.50632 -15.29174 -14.70146 -14.33964 -13.92319 -13.69839 -13.56926 -13.40432 -13.10180 -12.49774 -11.80832 -11.71182 -11.31506 -11.23775 -11.04801 -10.84883 -10.80849 -10.71498 -10.51378 -10.45443 -10.10189 -10.00082 -9.54229 -9.49289 -9.15172 -8.69346 -8.42532 -8.34572 -6.41889 -5.81524 -3.37186 1.36594 1.44428 2.57714 3.34043 3.39535 3.42945 3.80669 4.42308 4.87189 4.94222 5.03853 5.06905 5.08828 5.32282 5.38861 5.55912 5.58200 5.84497 5.97749 5.98641 6.12934 6.18397 6.28424 6.40658 6.41339 6.50736 6.55126 6.59448 6.69956 6.94498 7.04761 7.11459 7.25943 7.50643 7.83578 8.24652 8.51594 9.16170 9.78611 10.36154 11.18331 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015635 B = 0.008276 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.375554 B = 3382.301010 C = 4738.575601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.028 3.972 3 Si 0.884 3.116 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.263 4.263 8 H 0.060 0.940 9 N -0.539 5.539 10 C 0.129 3.871 11 C 0.116 3.884 12 H 0.113 0.887 13 O -0.548 6.548 14 C -0.089 4.089 15 C -0.109 4.109 16 C -0.117 4.117 17 C -0.123 4.123 18 C -0.112 4.112 19 C -0.030 4.030 20 Cl -0.051 7.051 21 C 0.136 3.864 22 C -0.201 4.201 23 C -0.217 4.217 24 H 0.257 0.743 25 H 0.114 0.886 26 H 0.027 0.973 27 H 0.357 0.643 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 -5.423 -9.914 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.173 4.173 3 Si 0.713 3.287 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.393 4.393 8 H 0.078 0.922 9 N -0.254 5.254 10 C 0.002 3.998 11 C 0.054 3.946 12 H 0.131 0.869 13 O -0.352 6.352 14 C -0.091 4.091 15 C -0.127 4.127 16 C -0.136 4.136 17 C -0.142 4.142 18 C -0.131 4.131 19 C -0.057 4.057 20 Cl -0.022 7.022 21 C 0.027 3.973 22 C -0.240 4.240 23 C -0.258 4.258 24 H 0.068 0.932 25 H 0.131 0.869 26 H 0.045 0.955 27 H 0.203 0.797 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.591 -4.771 -9.933 11.320 hybrid contribution -0.019 0.785 0.099 0.792 sum -2.610 -3.986 -9.833 10.927 Atomic orbital electron populations 1.69840 1.05418 1.26150 1.50845 1.25084 0.94911 0.98180 0.99146 0.86653 0.79574 0.83838 0.78681 1.20526 1.21400 1.20542 1.18851 0.94187 0.84766 1.41456 0.92193 1.43152 1.50319 1.02469 1.29424 1.21604 0.90630 1.03852 0.83692 1.22038 0.96072 0.84393 0.92056 0.86929 1.86656 1.36927 1.15162 1.96497 1.20854 0.98637 0.91695 0.97883 1.20846 0.96981 0.98146 0.96745 1.21119 0.98415 0.97371 0.96658 1.20989 1.00399 0.92292 1.00488 1.21024 0.96857 0.99651 0.95571 1.20844 0.99166 0.88930 0.96773 1.98420 1.79482 1.40495 1.83797 1.20994 0.91289 0.90353 0.94711 1.23111 1.07350 1.01987 0.91519 1.23266 1.00404 0.98673 1.03415 0.93232 0.86851 0.95464 0.79749 0.85510 0.85893 0.85707 0.85386 0.90009 0.88438 0.91043 0.91175 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.22 11.45 55.49 0.64 -23.58 16 2 C 0.03 0.75 4.97 -17.43 -0.09 0.66 16 3 Si 0.88 21.43 29.60 -169.99 -5.03 16.40 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.26 -6.98 8.07 -15.06 -0.12 -7.10 16 8 H 0.06 1.64 7.30 -52.49 -0.38 1.25 16 9 N -0.54 -13.03 2.74 -165.66 -0.45 -13.48 16 10 C 0.13 2.90 4.97 -4.04 -0.02 2.88 16 11 C 0.12 2.29 2.96 -27.88 -0.08 2.21 16 12 H 0.11 2.56 7.14 -51.93 -0.37 2.19 16 13 O -0.55 -10.07 12.55 -35.23 -0.44 -10.51 16 14 C -0.09 -1.53 5.07 -104.59 -0.53 -2.06 16 15 C -0.11 -1.55 9.30 -39.59 -0.37 -1.91 16 16 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 17 C -0.12 -1.51 10.05 -39.59 -0.40 -1.90 16 18 C -0.11 -1.60 9.83 -39.55 -0.39 -1.99 16 19 C -0.03 -0.52 6.31 -39.50 -0.25 -0.77 16 20 Cl -0.05 -0.98 27.17 -51.86 -1.41 -2.39 16 21 C 0.14 2.92 6.21 -67.93 -0.42 2.50 16 22 C -0.20 -4.11 9.80 -26.70 -0.26 -4.37 16 23 C -0.22 -4.30 10.14 -26.69 -0.27 -4.57 16 24 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 25 H 0.11 2.84 5.29 -51.93 -0.27 2.56 16 26 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 27 H 0.36 5.20 7.33 45.56 0.33 5.53 16 28 H 0.13 1.52 6.41 -52.49 -0.34 1.18 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.08 1.62 8.10 -51.93 -0.42 1.19 16 33 H 0.10 2.20 6.90 -51.92 -0.36 1.85 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.81 8.12 -51.93 -0.42 1.39 16 LS Contribution 315.96 15.07 4.76 4.76 Total: -1.00 -28.75 315.96 -9.44 -38.19 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -3.90 Total: 8.88 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -3.60 Total: -18.26 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.18 Total: -37.07 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.44 Total: -10.51 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.41 Total: -2.39 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.75 -9.44 -38.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299503383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.195 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds