Wall clock time and date at job start Tue Mar 31 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00185 * 2 1 4 4 H 1.48503 * 109.46955 * 239.99812 * 3 2 1 5 5 H 1.48500 * 109.47184 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47299 * 119.99777 * 3 2 1 7 7 C 1.38820 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99621 * 200.59350 * 7 2 1 9 9 N 1.36932 * 119.99894 * 20.59259 * 7 2 1 10 10 C 1.46501 * 119.99899 * 38.12202 * 9 7 2 11 11 C 1.53002 * 109.47195 * 89.99920 * 10 9 7 12 12 H 1.08996 * 109.46722 * 305.00103 * 11 10 9 13 13 O 1.42899 * 109.46744 * 64.99856 * 11 10 9 14 14 C 1.50695 * 109.47005 * 184.99759 * 11 10 9 15 15 C 1.38241 * 120.00921 * 264.99795 * 14 11 10 16 16 C 1.38217 * 120.01446 * 179.97438 * 15 14 11 17 17 C 1.38262 * 120.02881 * 0.03837 * 16 15 14 18 18 C 1.38200 * 120.01175 * 359.97438 * 17 16 15 19 19 C 1.38336 * 120.00653 * 84.72979 * 14 11 10 20 20 Cl 1.73599 * 120.01071 * 359.97438 * 19 14 11 21 21 C 1.46500 * 119.99991 * 218.12382 * 9 7 2 22 22 C 1.52996 * 117.50159 * 12.55328 * 21 9 7 23 23 C 1.53004 * 117.49691 * 303.89654 * 21 9 7 24 24 H 0.97000 * 119.99423 * 354.96009 * 1 2 3 25 25 H 1.09002 * 109.47236 * 330.00042 * 10 9 7 26 26 H 1.08996 * 109.46980 * 210.00085 * 10 9 7 27 27 H 0.96698 * 114.00313 * 60.00173 * 13 11 10 28 28 H 1.07998 * 119.98988 * 0.02562 * 15 14 11 29 29 H 1.07994 * 119.98436 * 180.02562 * 16 15 14 30 30 H 1.07997 * 119.99780 * 179.97438 * 17 16 15 31 31 H 1.07998 * 120.00520 * 180.02562 * 18 17 16 32 32 H 1.08994 * 115.55182 * 158.23364 * 21 9 7 33 33 H 1.09009 * 117.49395 * 0.02562 * 22 21 9 34 34 H 1.08998 * 117.50010 * 145.02190 * 22 21 9 35 35 H 1.08996 * 117.49993 * 214.98706 * 23 21 9 36 36 H 1.08999 * 117.49821 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0385 -1.2319 0.3295 9 7 1.3912 -2.3504 -0.4160 10 6 0.4618 -2.3122 -1.5479 11 6 1.2305 -2.5592 -2.8475 12 1 2.0455 -1.8401 -2.9298 13 8 1.7638 -3.8849 -2.8408 14 6 0.2984 -2.3987 -4.0207 15 6 -0.3243 -3.5061 -4.5656 16 6 -1.1796 -3.3589 -5.6413 17 6 -1.4125 -2.1043 -6.1735 18 6 -0.7904 -0.9964 -5.6298 19 6 0.0613 -1.1424 -4.5491 20 17 0.8369 0.2497 -3.8604 21 6 1.6581 -3.6169 0.2701 22 6 2.3945 -3.5531 1.6097 23 6 3.1147 -4.0759 0.3644 24 1 -0.4849 0.8368 0.0738 25 1 -0.0191 -1.3349 -1.5904 26 1 -0.2964 -3.0850 -1.4217 27 1 1.0935 -4.5782 -2.7696 28 1 -0.1429 -4.4863 -4.1502 29 1 -1.6661 -4.2243 -6.0664 30 1 -2.0806 -1.9899 -7.0143 31 1 -0.9727 -0.0164 -6.0453 32 1 0.8949 -4.3859 0.1515 33 1 2.6799 -2.5686 1.9807 34 1 2.1157 -4.2803 2.3724 35 1 3.3095 -5.1469 0.3081 36 1 3.8741 -3.4358 -0.0845 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299503383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:28 Heat of formation + Delta-G solvation = 1.522864 kcal Electronic energy + Delta-G solvation = -20360.901749 eV Core-core repulsion = 17257.769462 eV Total energy + Delta-G solvation = -3103.132287 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66777 -38.84955 -37.49034 -37.25014 -35.15499 -32.89238 -32.02207 -31.59029 -28.67201 -26.34696 -24.05308 -23.51216 -22.87808 -21.94543 -21.62490 -18.89742 -18.07711 -17.39374 -16.93429 -16.68887 -16.16426 -15.99584 -15.64630 -15.01787 -14.90205 -14.73200 -14.46487 -14.11980 -13.55881 -13.06135 -12.90063 -12.75871 -12.63254 -12.52128 -12.43010 -12.24634 -12.13826 -12.08178 -11.87058 -11.55815 -11.31112 -11.02562 -10.78143 -10.40190 -9.81822 -9.56267 -8.35003 -7.80351 -5.40575 0.24705 0.35046 1.25618 1.39912 1.40665 1.44586 2.44114 2.71555 3.19806 3.40152 3.56166 3.65006 3.90675 3.95796 4.14546 4.35362 4.39710 4.44879 4.52893 4.57216 4.62104 4.72380 4.77218 4.96987 5.00704 5.09632 5.19678 5.34660 5.41450 5.49046 5.57777 5.60178 5.66780 5.77126 5.94183 6.49312 6.94636 7.19292 7.88609 8.39476 9.12677 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015635 B = 0.008276 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.375554 B = 3382.301010 C = 4738.575601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.002 4.002 3 Si 0.920 3.080 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.264 4.264 8 H 0.043 0.957 9 N -0.556 5.556 10 C 0.133 3.867 11 C 0.137 3.863 12 H 0.074 0.926 13 O -0.555 6.555 14 C -0.116 4.116 15 C -0.110 4.110 16 C -0.108 4.108 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.054 4.054 20 Cl -0.086 7.086 21 C 0.116 3.884 22 C -0.200 4.200 23 C -0.198 4.198 24 H 0.253 0.747 25 H 0.088 0.912 26 H 0.034 0.966 27 H 0.375 0.625 28 H 0.149 0.851 29 H 0.164 0.836 30 H 0.165 0.835 31 H 0.142 0.858 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.335 -7.687 -11.544 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.201 4.201 3 Si 0.748 3.252 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.394 4.394 8 H 0.061 0.939 9 N -0.272 5.272 10 C 0.006 3.994 11 C 0.076 3.924 12 H 0.092 0.908 13 O -0.361 6.361 14 C -0.118 4.118 15 C -0.128 4.128 16 C -0.126 4.126 17 C -0.129 4.129 18 C -0.139 4.139 19 C -0.080 4.080 20 Cl -0.057 7.057 21 C 0.008 3.992 22 C -0.238 4.238 23 C -0.239 4.239 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.052 0.948 27 H 0.223 0.777 28 H 0.166 0.834 29 H 0.182 0.818 30 H 0.182 0.818 31 H 0.160 0.840 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.853 -7.059 -11.571 14.091 hybrid contribution 0.335 1.357 0.508 1.487 sum -3.518 -5.702 -11.063 12.934 Atomic orbital electron populations 1.69929 1.06064 1.26025 1.52236 1.25413 0.95337 0.99739 0.99626 0.86072 0.78791 0.81879 0.78411 1.20923 1.21350 1.20195 1.18826 0.93581 0.86150 1.40831 0.93926 1.43299 1.50504 1.02741 1.30654 1.21503 0.90695 1.02591 0.84601 1.21355 0.94771 0.84210 0.92090 0.90846 1.86601 1.37931 1.15079 1.96515 1.20698 0.99877 0.92986 0.98223 1.21169 0.96596 0.97925 0.97146 1.21609 0.96940 0.98817 0.95213 1.21499 0.99336 0.91416 1.00600 1.21309 0.96359 1.01461 0.94755 1.21102 1.00673 0.87918 0.98328 1.98400 1.80376 1.42327 1.84566 1.21271 0.92721 0.89901 0.95330 1.23098 1.07200 1.01422 0.92101 1.23176 0.98534 0.99924 1.02236 0.93773 0.89481 0.94794 0.77658 0.83357 0.81829 0.81792 0.84023 0.87787 0.91362 0.88038 0.87937 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.88 11.45 21.65 0.25 -50.63 16 2 C 0.00 -0.10 4.97 84.86 0.42 0.32 16 3 Si 0.92 45.26 29.60 68.60 2.03 47.29 16 4 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 7 C -0.26 -14.43 8.07 84.04 0.68 -13.76 16 8 H 0.04 2.44 7.30 -2.91 -0.02 2.42 16 9 N -0.56 -27.29 2.74 -678.03 -1.86 -29.15 16 10 C 0.13 6.02 4.97 86.38 0.43 6.45 16 11 C 0.14 5.50 2.96 29.85 0.09 5.59 16 12 H 0.07 3.51 7.14 -2.39 -0.02 3.49 16 13 O -0.55 -19.84 12.55 -148.98 -1.87 -21.70 16 14 C -0.12 -3.94 5.07 -19.84 -0.10 -4.04 16 15 C -0.11 -2.80 9.30 22.27 0.21 -2.60 16 16 C -0.11 -2.13 10.05 22.27 0.22 -1.91 16 17 C -0.11 -2.23 10.05 22.27 0.22 -2.00 16 18 C -0.12 -3.20 9.83 22.29 0.22 -2.98 16 19 C -0.05 -1.84 6.31 22.33 0.14 -1.70 16 20 Cl -0.09 -3.42 27.17 -2.72 -0.07 -3.50 16 21 C 0.12 4.88 6.21 44.99 0.28 5.16 16 22 C -0.20 -7.98 9.80 30.62 0.30 -7.68 16 23 C -0.20 -7.62 10.14 30.62 0.31 -7.31 16 24 H 0.25 14.05 8.32 -92.71 -0.77 13.28 16 25 H 0.09 4.49 5.29 -2.39 -0.01 4.48 16 26 H 0.03 1.44 8.04 -2.39 -0.02 1.42 16 27 H 0.37 10.09 7.33 -74.06 -0.54 9.55 16 28 H 0.15 3.00 6.41 -2.91 -0.02 2.98 16 29 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.10 3.88 8.10 -2.39 -0.02 3.86 16 33 H 0.07 3.14 6.90 -2.38 -0.02 3.12 16 34 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.06 2.54 8.12 -2.39 -0.02 2.52 16 Total: -1.00 -64.77 315.96 2.45 -62.32 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.55 Total: 21.82 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 3.42 Total: -26.45 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -1.61 Total: -79.78 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -1.87 Total: -21.70 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 17 Polarization: -3.42 SS G_CDS: -0.07 Total: -3.50 kcal Total: -64.77 2.45 -62.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299503383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.841 kcal (2) G-P(sol) polarization free energy of solvation -64.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds