Wall clock time and date at job start Tue Mar 31 2020 05:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.36000 * 117.00256 * 2 1 4 4 C 1.38720 * 119.97134 * 0.29960 * 3 2 1 5 5 C 1.38091 * 120.02119 * 180.26018 * 4 3 2 6 6 C 1.38927 * 119.97426 * 359.43968 * 5 4 3 7 7 S 1.76196 * 120.02510 * 180.30536 * 6 5 4 8 8 C 1.81394 * 103.00153 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47315 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.46986 * 179.97438 * 9 8 7 11 11 O 1.21288 * 120.00410 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99896 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00021 * 179.97438 * 12 10 9 14 14 H 1.07993 * 119.99897 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99563 * 179.97438 * 13 12 10 16 16 N 1.31405 * 120.00399 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99674 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47311 * 60.00232 * 17 15 13 19 19 H 1.48503 * 109.47328 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47135 * 300.00105 * 17 15 13 21 21 C 1.38917 * 119.94815 * 0.28245 * 6 5 4 22 22 C 1.38090 * 119.97897 * 0.02562 * 21 6 5 23 23 H 1.09000 * 109.46641 * 59.99860 * 1 2 3 24 24 H 1.08998 * 109.47074 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46716 * 300.00210 * 1 2 3 26 26 H 1.07995 * 119.99569 * 0.02562 * 4 3 2 27 27 H 1.08002 * 120.01544 * 179.72365 * 5 4 3 28 28 H 1.08996 * 109.47418 * 300.00099 * 8 7 6 29 29 H 1.09004 * 109.47318 * 59.99869 * 8 7 6 30 30 H 1.08996 * 109.47330 * 300.00608 * 9 8 7 31 31 H 1.09004 * 109.46663 * 59.99923 * 9 8 7 32 32 H 0.97003 * 119.99603 * 0.02562 * 12 10 9 33 33 H 0.97000 * 120.00081 * 180.02562 * 16 15 13 34 34 H 1.08007 * 120.00903 * 180.02562 * 21 6 5 35 35 H 1.07993 * 119.98626 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2905 2.3748 0.0063 5 6 1.9164 3.6057 0.0009 6 6 3.3037 3.6790 0.0009 7 16 4.1037 5.2489 0.0021 8 6 5.8637 4.8100 0.0009 9 6 6.7076 6.0863 0.0012 10 6 8.1698 5.7216 0.0008 11 8 8.5041 4.5557 -0.0001 12 7 9.1061 6.6911 0.0015 13 6 10.4364 6.3594 0.0017 14 1 10.7340 5.3213 0.0009 15 6 11.4016 7.3590 0.0018 16 7 11.0394 8.6221 0.0023 17 14 13.2141 6.9070 0.0014 18 1 13.5249 6.1084 -1.2114 19 1 14.0332 8.1457 0.0023 20 1 13.5252 6.1076 1.2136 21 6 4.0597 2.5136 0.0004 22 6 3.4317 1.2837 -0.0006 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2121 2.3177 0.0116 27 1 1.3276 4.5112 0.0012 28 1 6.0924 4.2227 0.8901 29 1 6.0916 4.2244 -0.8898 30 1 6.4789 6.6733 -0.8883 31 1 6.4798 6.6722 0.8916 32 1 8.8387 7.6236 0.0026 33 1 11.7132 9.3199 0.0020 34 1 5.1384 2.5694 0.0008 35 1 4.0194 0.3776 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299648283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:44 Heat of formation + Delta-G solvation = -59.585514 kcal Electronic energy + Delta-G solvation = -18188.110307 eV Core-core repulsion = 15084.371869 eV Total energy + Delta-G solvation = -3103.738438 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.20647 -38.30777 -37.51219 -34.13881 -32.40345 -31.33360 -31.13379 -30.37061 -27.56102 -25.76736 -23.76679 -22.46122 -22.34089 -19.23067 -18.43775 -17.89702 -17.26857 -16.46686 -16.11233 -15.98078 -15.14502 -14.83249 -14.74629 -14.15534 -14.02157 -13.95724 -13.62179 -13.25879 -12.78414 -12.77386 -12.25945 -11.97175 -11.61756 -11.60404 -11.42023 -11.16622 -11.14626 -10.91420 -10.47164 -10.25432 -10.08751 -9.56295 -9.24115 -9.15734 -8.50106 -8.03325 -7.20238 -6.46301 -3.87790 1.11911 1.16860 1.59537 2.52704 3.04595 3.17271 3.23818 3.28142 3.52205 3.83096 4.14584 4.55654 4.65500 4.81095 4.83561 4.91590 5.10424 5.14471 5.15219 5.21145 5.24506 5.33487 5.41919 5.77932 5.81187 5.89425 6.10613 6.11798 6.17388 6.20277 6.32362 6.48266 7.15159 7.50674 7.99312 8.53495 9.11365 9.47454 9.97501 10.70945 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.045482 B = 0.002692 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.479834 B =10399.396821 C =10989.127788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.115 3.885 4 C -0.192 4.192 5 C -0.063 4.063 6 C -0.111 4.111 7 S -0.131 6.131 8 C -0.076 4.076 9 C -0.116 4.116 10 C 0.443 3.557 11 O -0.598 6.598 12 N -0.557 5.557 13 C -0.304 4.304 14 H 0.103 0.897 15 C 0.024 3.976 16 N -0.899 5.899 17 Si 0.932 3.068 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.091 4.091 22 C -0.130 4.130 23 H 0.055 0.945 24 H 0.098 0.902 25 H 0.055 0.945 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.394 0.606 33 H 0.273 0.727 34 H 0.138 0.862 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.416 -9.268 0.001 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.068 3.932 4 C -0.212 4.212 5 C -0.087 4.087 6 C -0.224 4.224 7 S 0.113 5.887 8 C -0.224 4.224 9 C -0.158 4.158 10 C 0.228 3.772 11 O -0.484 6.484 12 N -0.192 5.192 13 C -0.433 4.433 14 H 0.121 0.879 15 C -0.178 4.178 16 N -0.539 5.539 17 Si 0.759 3.241 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.115 4.115 22 C -0.150 4.150 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.228 0.772 33 H 0.083 0.917 34 H 0.156 0.844 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.375 -8.854 0.002 22.216 hybrid contribution 0.999 -0.659 -0.002 1.197 sum -19.376 -9.513 0.000 21.586 Atomic orbital electron populations 1.23044 0.78545 1.03854 1.01332 1.86093 1.21260 1.26930 1.88937 1.19002 0.92313 0.84111 0.97771 1.21116 0.99864 0.91888 1.08316 1.20540 0.92221 0.97399 0.98574 1.21652 0.96593 0.96875 1.07275 1.85284 1.04022 1.06863 1.92488 1.23368 0.90404 1.01757 1.06915 1.21201 0.94058 0.96464 1.04119 1.19648 0.86369 0.86406 0.84827 1.90518 1.82290 1.18908 1.56699 1.41865 1.05838 1.08072 1.63415 1.19677 0.80690 0.94905 1.48036 0.87880 1.25294 1.00770 0.94717 0.97051 1.69601 1.35279 0.99131 1.49926 0.85899 0.81447 0.77647 0.79126 1.19831 1.20907 1.19835 1.21200 1.00359 0.90806 0.99124 1.20353 0.91350 0.98385 1.04926 0.92667 0.88315 0.92676 0.85165 0.85239 0.88749 0.88754 0.89418 0.89425 0.77223 0.91679 0.84423 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.36 10.50 -19.74 -0.21 -3.57 16 3 C 0.12 1.33 6.69 -39.23 -0.26 1.07 16 4 C -0.19 -1.98 9.03 -39.46 -0.36 -2.34 16 5 C -0.06 -0.73 9.79 -39.38 -0.39 -1.11 16 6 C -0.11 -1.48 6.11 -39.07 -0.24 -1.71 16 7 S -0.13 -1.82 21.92 -107.50 -2.36 -4.17 16 8 C -0.08 -1.20 3.62 37.16 0.13 -1.07 16 9 C -0.12 -2.01 5.71 -27.88 -0.16 -2.17 16 10 C 0.44 10.26 7.78 -10.98 -0.09 10.17 16 11 O -0.60 -15.79 15.56 5.55 0.09 -15.70 16 12 N -0.56 -13.99 5.29 -10.97 -0.06 -14.05 16 13 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 14 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 15 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 16 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 17 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 C -0.09 -1.21 9.36 -39.38 -0.37 -1.57 16 22 C -0.13 -1.59 9.98 -39.46 -0.39 -1.99 16 23 H 0.05 0.29 7.67 -51.93 -0.40 -0.10 16 24 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.29 7.65 -51.93 -0.40 -0.10 16 26 H 0.13 0.98 6.29 -52.49 -0.33 0.65 16 27 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.09 1.54 7.70 -51.93 -0.40 1.14 16 29 H 0.09 1.54 7.71 -51.92 -0.40 1.14 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.14 1.84 5.87 -52.48 -0.31 1.53 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 317.02 15.07 4.78 4.78 Total: -1.00 -31.05 317.02 -7.60 -38.65 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.18 Total: 9.31 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.36 Total: -7.55 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.67 Total: -37.59 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.12 Total: -19.27 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -2.36 Total: -4.17 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.05 -7.60 -38.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299648283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.935 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds