Wall clock time and date at job start Tue Mar 31 2020 05:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.36000 * 117.00256 * 2 1 4 4 C 1.38720 * 119.97134 * 0.29960 * 3 2 1 5 5 C 1.38091 * 120.02119 * 180.26018 * 4 3 2 6 6 C 1.38927 * 119.97426 * 359.43968 * 5 4 3 7 7 S 1.76196 * 120.02510 * 180.30536 * 6 5 4 8 8 C 1.81394 * 103.00153 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47315 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.46986 * 179.97438 * 9 8 7 11 11 O 1.21288 * 120.00410 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99896 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00021 * 179.97438 * 12 10 9 14 14 H 1.07993 * 119.99897 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99563 * 179.97438 * 13 12 10 16 16 N 1.31405 * 120.00399 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99674 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47311 * 60.00232 * 17 15 13 19 19 H 1.48503 * 109.47328 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47135 * 300.00105 * 17 15 13 21 21 C 1.38917 * 119.94815 * 0.28245 * 6 5 4 22 22 C 1.38090 * 119.97897 * 0.02562 * 21 6 5 23 23 H 1.09000 * 109.46641 * 59.99860 * 1 2 3 24 24 H 1.08998 * 109.47074 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46716 * 300.00210 * 1 2 3 26 26 H 1.07995 * 119.99569 * 0.02562 * 4 3 2 27 27 H 1.08002 * 120.01544 * 179.72365 * 5 4 3 28 28 H 1.08996 * 109.47418 * 300.00099 * 8 7 6 29 29 H 1.09004 * 109.47318 * 59.99869 * 8 7 6 30 30 H 1.08996 * 109.47330 * 300.00608 * 9 8 7 31 31 H 1.09004 * 109.46663 * 59.99923 * 9 8 7 32 32 H 0.97003 * 119.99603 * 0.02562 * 12 10 9 33 33 H 0.97000 * 120.00081 * 180.02562 * 16 15 13 34 34 H 1.08007 * 120.00903 * 180.02562 * 21 6 5 35 35 H 1.07993 * 119.98626 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2905 2.3748 0.0063 5 6 1.9164 3.6057 0.0009 6 6 3.3037 3.6790 0.0009 7 16 4.1037 5.2489 0.0021 8 6 5.8637 4.8100 0.0009 9 6 6.7076 6.0863 0.0012 10 6 8.1698 5.7216 0.0008 11 8 8.5041 4.5557 -0.0001 12 7 9.1061 6.6911 0.0015 13 6 10.4364 6.3594 0.0017 14 1 10.7340 5.3213 0.0009 15 6 11.4016 7.3590 0.0018 16 7 11.0394 8.6221 0.0023 17 14 13.2141 6.9070 0.0014 18 1 13.5249 6.1084 -1.2114 19 1 14.0332 8.1457 0.0023 20 1 13.5252 6.1076 1.2136 21 6 4.0597 2.5136 0.0004 22 6 3.4317 1.2837 -0.0006 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2121 2.3177 0.0116 27 1 1.3276 4.5112 0.0012 28 1 6.0924 4.2227 0.8901 29 1 6.0916 4.2244 -0.8898 30 1 6.4789 6.6733 -0.8883 31 1 6.4798 6.6722 0.8916 32 1 8.8387 7.6236 0.0026 33 1 11.7132 9.3199 0.0020 34 1 5.1384 2.5694 0.0008 35 1 4.0194 0.3776 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299648283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:43 Heat of formation + Delta-G solvation = -78.712483 kcal Electronic energy + Delta-G solvation = -18188.939715 eV Core-core repulsion = 15084.371869 eV Total energy + Delta-G solvation = -3104.567846 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02163 -40.20747 -38.34056 -36.11728 -33.92300 -33.20094 -32.15065 -31.25598 -28.14666 -27.59286 -25.27158 -23.52597 -23.21052 -21.02773 -19.92686 -19.23695 -18.29940 -17.91887 -17.14158 -16.68091 -16.67225 -16.60113 -15.90258 -15.61140 -15.48471 -14.79156 -14.73064 -14.52833 -14.30099 -13.86513 -13.60397 -13.25253 -12.96586 -12.94488 -12.61143 -12.48989 -12.44987 -12.16146 -12.12337 -11.94402 -11.54083 -11.22154 -10.44155 -10.13062 -10.09421 -10.05515 -8.49101 -8.22215 -5.98720 0.19705 0.26457 0.47002 1.38710 1.39271 1.41692 1.52638 1.99062 2.29239 2.35552 2.61393 3.17811 3.23944 3.75212 3.75709 3.84213 3.91965 4.17949 4.29048 4.31792 4.42392 4.45466 4.52215 4.64706 4.73795 4.74684 4.87476 4.94517 5.00959 5.23730 5.24932 5.38934 5.60306 5.95605 6.39326 6.54008 7.07752 7.50421 8.04401 8.67801 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.045482 B = 0.002692 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.479834 B =10399.396821 C =10989.127788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.115 3.885 4 C -0.185 4.185 5 C -0.063 4.063 6 C -0.134 4.134 7 S -0.109 6.109 8 C -0.075 4.075 9 C -0.103 4.103 10 C 0.442 3.558 11 O -0.634 6.634 12 N -0.568 5.568 13 C -0.338 4.338 14 H 0.081 0.919 15 C -0.012 4.012 16 N -0.918 5.918 17 Si 0.994 3.006 18 H -0.271 1.271 19 H -0.270 1.270 20 H -0.271 1.271 21 C -0.104 4.104 22 C -0.146 4.146 23 H 0.067 0.933 24 H 0.118 0.882 25 H 0.067 0.933 26 H 0.163 0.837 27 H 0.149 0.851 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.398 0.602 33 H 0.279 0.721 34 H 0.125 0.875 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.279 -9.142 0.003 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.249 6.249 3 C 0.067 3.933 4 C -0.205 4.205 5 C -0.086 4.086 6 C -0.247 4.247 7 S 0.135 5.865 8 C -0.223 4.223 9 C -0.145 4.145 10 C 0.228 3.772 11 O -0.523 6.523 12 N -0.204 5.204 13 C -0.468 4.468 14 H 0.099 0.901 15 C -0.212 4.212 16 N -0.558 5.558 17 Si 0.817 3.183 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.196 1.196 21 C -0.128 4.128 22 C -0.166 4.166 23 H 0.086 0.914 24 H 0.136 0.864 25 H 0.086 0.914 26 H 0.181 0.819 27 H 0.167 0.833 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.233 0.767 33 H 0.089 0.911 34 H 0.143 0.857 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.268 -8.722 0.005 23.915 hybrid contribution 1.404 -0.815 -0.003 1.623 sum -20.864 -9.538 0.002 22.941 Atomic orbital electron populations 1.23391 0.76214 1.05712 1.02505 1.86084 1.23700 1.26469 1.88628 1.19131 0.92175 0.85087 0.96904 1.21440 1.01435 0.90852 1.06734 1.20820 0.91474 0.98723 0.97601 1.21775 0.97541 0.96294 1.09072 1.85036 1.01396 1.07190 1.92921 1.23176 0.92538 1.00732 1.05883 1.21110 0.89738 0.97539 1.06076 1.20651 0.88534 0.85506 0.82513 1.90491 1.83539 1.20521 1.57709 1.41942 1.05573 1.08621 1.64235 1.19664 0.82436 0.94324 1.50342 0.90135 1.26080 1.04580 0.94522 0.96031 1.69662 1.36692 0.99706 1.49733 0.84974 0.76459 0.77823 0.79006 1.19634 1.19422 1.19642 1.21151 0.99945 0.91536 1.00148 1.20480 0.92359 0.98219 1.05535 0.91426 0.86351 0.91426 0.81923 0.83284 0.89906 0.89910 0.87317 0.87328 0.76732 0.91147 0.85673 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -6.44 10.50 -93.55 -0.98 -7.42 16 3 C 0.11 2.47 6.69 22.50 0.15 2.62 16 4 C -0.18 -3.33 9.03 22.35 0.20 -3.13 16 5 C -0.06 -1.30 9.79 22.40 0.22 -1.08 16 6 C -0.13 -3.45 6.11 22.60 0.14 -3.31 16 7 S -0.11 -2.90 21.92 -56.49 -1.24 -4.14 16 8 C -0.07 -2.37 3.62 71.98 0.26 -2.11 16 9 C -0.10 -3.51 5.71 29.85 0.17 -3.34 16 10 C 0.44 20.84 7.78 87.66 0.68 21.53 16 11 O -0.63 -34.67 15.56 -3.05 -0.05 -34.71 16 12 N -0.57 -29.10 5.29 -306.99 -1.62 -30.73 16 13 C -0.34 -19.16 9.68 84.04 0.81 -18.34 16 14 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 15 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 16 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 17 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 C -0.10 -2.80 9.36 22.40 0.21 -2.59 16 22 C -0.15 -3.57 9.98 22.35 0.22 -3.35 16 23 H 0.07 0.50 7.67 -2.39 -0.02 0.48 16 24 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.07 0.49 7.65 -2.39 -0.02 0.48 16 26 H 0.16 1.80 6.29 -2.91 -0.02 1.78 16 27 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 28 H 0.08 2.80 7.70 -2.39 -0.02 2.78 16 29 H 0.08 2.80 7.71 -2.39 -0.02 2.78 16 30 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 32 H 0.40 19.35 7.90 -92.71 -0.73 18.61 16 33 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.13 3.57 5.87 -2.91 -0.02 3.55 16 35 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -67.38 317.02 3.45 -63.93 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.38 Total: 29.41 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 4.65 Total: -11.99 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -1.34 Total: -79.79 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -1.03 Total: -42.14 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -1.24 Total: -4.14 kcal Total: -67.38 3.45 -63.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299648283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.783 kcal (2) G-P(sol) polarization free energy of solvation -67.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds