Wall clock time and date at job start Tue Mar 31 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00084 * 2 1 4 4 H 1.48494 * 109.47265 * 270.00216 * 3 2 1 5 5 H 1.48500 * 109.46879 * 30.00382 * 3 2 1 6 6 H 1.48495 * 109.46906 * 150.00276 * 3 2 1 7 7 C 1.37874 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00594 * 173.64362 * 7 2 1 9 9 C 1.50704 * 119.99882 * 353.64820 * 7 2 1 10 10 C 1.53001 * 115.55284 * 85.47759 * 9 7 2 11 11 N 1.46492 * 109.47224 * 65.14229 * 10 9 7 12 12 C 1.34772 * 120.00065 * 178.58996 * 11 10 9 13 13 O 1.21594 * 119.99983 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00277 * 179.72548 * 12 11 10 15 15 C 1.46501 * 119.99913 * 180.26878 * 14 12 11 16 16 C 1.50701 * 109.46838 * 179.97438 * 15 14 12 17 17 C 1.33641 * 122.74979 * 94.73604 * 16 15 14 18 18 S 1.76197 * 107.92634 * 179.97438 * 17 16 15 19 19 C 1.70981 * 90.28267 * 0.27534 * 18 17 16 20 20 N 1.29024 * 110.16326 * 359.84018 * 19 18 17 21 21 C 1.53003 * 117.49866 * 231.14465 * 9 7 2 22 22 C 1.53003 * 117.49732 * 299.80301 * 9 7 2 23 23 H 0.96994 * 120.00241 * 5.06798 * 1 2 3 24 24 H 1.09000 * 109.46657 * 305.14324 * 10 9 7 25 25 H 1.08995 * 109.47087 * 185.14194 * 10 9 7 26 26 H 0.97001 * 120.00534 * 358.57928 * 11 10 9 27 27 H 0.97000 * 119.99690 * 0.26490 * 14 12 11 28 28 H 1.08991 * 109.47365 * 299.99596 * 15 14 12 29 29 H 1.08997 * 109.47455 * 60.00030 * 15 14 12 30 30 H 1.08006 * 126.03521 * 0.03198 * 17 16 15 31 31 H 1.08000 * 124.91497 * 179.84278 * 19 18 17 32 32 H 1.09000 * 117.50377 * 215.00150 * 21 9 7 33 33 H 1.09007 * 117.49885 * 0.02562 * 21 9 7 34 34 H 1.08998 * 117.49802 * 359.97438 * 22 9 7 35 35 H 1.09003 * 117.49862 * 144.97562 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0796 -1.1969 -0.1041 9 6 1.2579 -2.4952 0.1433 10 6 0.7052 -3.0859 -1.1553 11 7 1.8164 -3.4580 -2.0344 12 6 1.5680 -4.0284 -3.2299 13 8 0.4216 -4.2347 -3.5787 14 7 2.5902 -4.3657 -4.0412 15 6 2.3199 -4.9803 -5.3432 16 6 3.6227 -5.2568 -6.0483 17 6 4.2407 -6.4402 -5.9875 18 16 5.7158 -6.3316 -6.9450 19 6 5.3590 -4.7032 -7.3253 20 7 4.2494 -4.3496 -6.7701 21 6 1.7443 -3.4742 1.2138 22 6 0.4384 -2.7022 1.4186 23 1 -0.4850 0.8367 -0.0742 24 1 0.0797 -2.3455 -1.6539 25 1 0.1102 -3.9703 -0.9278 26 1 2.7310 -3.2937 -1.7562 27 1 3.5047 -4.2013 -3.7628 28 1 1.7792 -5.9155 -5.1983 29 1 1.7172 -4.3020 -5.9472 30 1 3.8963 -7.3099 -5.4476 31 1 5.9736 -4.0633 -7.9412 32 1 1.6705 -4.5390 0.9930 33 1 2.6041 -3.1769 1.8144 34 1 0.4396 -1.8975 2.1538 35 1 -0.4947 -3.2589 1.3324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331538851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:38 Heat of formation + Delta-G solvation = 41.773845 kcal Electronic energy + Delta-G solvation = -19003.806011 eV Core-core repulsion = 15936.755595 eV Total energy + Delta-G solvation = -3067.050416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.26187 -39.14875 -36.75050 -34.43233 -33.21085 -31.94526 -30.89805 -27.37973 -25.93484 -25.17257 -24.26055 -21.19375 -20.29449 -19.92510 -19.35350 -18.58957 -17.55018 -16.40241 -15.98167 -15.61355 -14.97995 -14.60502 -14.55244 -14.05480 -13.93265 -13.57147 -13.35749 -13.08136 -12.86910 -12.55661 -11.76035 -11.56420 -11.51706 -10.97731 -10.90696 -10.50725 -10.24992 -9.94909 -9.82260 -9.75829 -9.54292 -9.19824 -8.95054 -8.83895 -8.46814 -8.23211 -7.94265 -6.05035 -4.13570 0.38773 1.06761 1.39932 2.35325 3.28061 3.35625 3.37127 3.42808 3.80812 3.94317 4.37685 4.71370 4.89417 4.93332 5.01860 5.23190 5.37985 5.52888 5.73084 5.87241 6.05675 6.36697 6.49601 6.62240 6.71245 6.72557 6.88079 7.11068 7.35487 7.42368 7.44713 7.50058 7.62006 7.84007 8.36762 8.67712 8.86900 9.22109 9.53111 11.02811 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.003623 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.014031 B = 7726.500148 C = 8332.860877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.182 3.818 11 N -0.719 5.719 12 C 0.700 3.300 13 O -0.603 6.603 14 N -0.749 5.749 15 C 0.218 3.782 16 C 0.050 3.950 17 C -0.233 4.233 18 S 0.117 5.883 19 C 0.023 3.977 20 N -0.456 5.456 21 C -0.211 4.211 22 C -0.147 4.147 23 H 0.262 0.738 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.396 0.604 27 H 0.394 0.606 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.182 0.818 31 H 0.201 0.799 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.627 -12.526 -11.861 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.027 3.973 10 C 0.059 3.941 11 N -0.371 5.371 12 C 0.400 3.600 13 O -0.482 6.482 14 N -0.406 5.406 15 C 0.091 3.909 16 C -0.082 4.082 17 C -0.374 4.374 18 S 0.369 5.631 19 C -0.276 4.276 20 N -0.170 5.170 21 C -0.248 4.248 22 C -0.185 4.185 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.229 0.771 27 H 0.227 0.773 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.199 0.801 31 H 0.218 0.782 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.985 -12.680 -12.441 20.886 hybrid contribution 0.593 1.342 0.571 1.575 sum 11.578 -11.338 -11.870 20.087 Atomic orbital electron populations 1.69970 1.05875 1.26914 1.48221 1.24976 0.94793 0.98912 0.94298 0.86640 0.79909 0.83615 0.78148 1.20673 1.21162 1.19862 1.20323 0.92762 0.88635 1.52065 0.92290 1.19042 0.98595 0.93875 0.85751 1.20857 0.86545 0.96677 0.90063 1.45126 1.11324 1.63758 1.16894 1.15977 0.84364 0.78845 0.80802 1.90878 1.19838 1.61924 1.75609 1.45005 1.08680 1.68594 1.18347 1.19430 0.89665 0.99102 0.82699 1.20425 0.99265 0.88952 0.99576 1.27027 0.99097 1.03726 1.07521 1.84085 1.22374 1.12694 1.43937 1.28478 0.97421 0.97774 1.03937 1.66163 1.07138 1.34407 1.09247 1.23020 0.98670 0.95669 1.07461 1.22489 0.92252 1.01063 1.02731 0.92847 0.91167 0.94703 0.77095 0.77256 0.90097 0.90024 0.80103 0.78249 0.91659 0.90431 0.89827 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.53 12.91 55.43 0.72 -23.82 16 2 C 0.07 2.00 5.39 -17.82 -0.10 1.90 16 3 Si 0.89 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.50 -12.99 8.63 -34.44 -0.30 -13.29 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.03 0.67 1.38 -155.65 -0.21 0.45 16 10 C 0.18 4.23 5.50 -4.05 -0.02 4.21 16 11 N -0.72 -14.41 5.48 -65.23 -0.36 -14.77 16 12 C 0.70 13.78 8.57 -86.92 -0.74 13.03 16 13 O -0.60 -14.11 16.34 5.28 0.09 -14.03 16 14 N -0.75 -11.30 5.55 -66.42 -0.37 -11.67 16 15 C 0.22 2.91 6.11 -5.19 -0.03 2.88 16 16 C 0.05 0.57 6.11 -84.22 -0.51 0.05 16 17 C -0.23 -2.04 11.12 29.12 0.32 -1.72 16 18 S 0.12 0.81 23.22 -107.50 -2.50 -1.68 16 19 C 0.02 0.19 12.23 51.58 0.63 0.82 16 20 N -0.46 -5.42 10.53 -11.90 -0.13 -5.55 16 21 C -0.21 -4.40 9.96 -26.69 -0.27 -4.67 16 22 C -0.15 -3.38 9.41 -26.69 -0.25 -3.63 16 23 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 24 H 0.07 1.88 8.14 -51.93 -0.42 1.46 16 25 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 26 H 0.40 7.23 8.38 -40.82 -0.34 6.89 16 27 H 0.39 5.19 8.48 -40.82 -0.35 4.84 16 28 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.20 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.59 8.14 -51.92 -0.42 1.16 16 34 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -31.74 323.46 -8.64 -40.38 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -4.46 Total: 10.43 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.48 Total: 0.04 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.14 Total: -55.80 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.09 Total: -14.03 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.50 Total: -1.68 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.74 -8.64 -40.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331538851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.151 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds