Wall clock time and date at job start Tue Mar 31 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00084 * 2 1 4 4 H 1.48494 * 109.47265 * 270.00216 * 3 2 1 5 5 H 1.48500 * 109.46879 * 30.00382 * 3 2 1 6 6 H 1.48495 * 109.46906 * 150.00276 * 3 2 1 7 7 C 1.37874 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00594 * 173.64362 * 7 2 1 9 9 C 1.50704 * 119.99882 * 353.64820 * 7 2 1 10 10 C 1.53001 * 115.55284 * 85.47759 * 9 7 2 11 11 N 1.46492 * 109.47224 * 65.14229 * 10 9 7 12 12 C 1.34772 * 120.00065 * 178.58996 * 11 10 9 13 13 O 1.21594 * 119.99983 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00277 * 179.72548 * 12 11 10 15 15 C 1.46501 * 119.99913 * 180.26878 * 14 12 11 16 16 C 1.50701 * 109.46838 * 179.97438 * 15 14 12 17 17 C 1.33641 * 122.74979 * 94.73604 * 16 15 14 18 18 S 1.76197 * 107.92634 * 179.97438 * 17 16 15 19 19 C 1.70981 * 90.28267 * 0.27534 * 18 17 16 20 20 N 1.29024 * 110.16326 * 359.84018 * 19 18 17 21 21 C 1.53003 * 117.49866 * 231.14465 * 9 7 2 22 22 C 1.53003 * 117.49732 * 299.80301 * 9 7 2 23 23 H 0.96994 * 120.00241 * 5.06798 * 1 2 3 24 24 H 1.09000 * 109.46657 * 305.14324 * 10 9 7 25 25 H 1.08995 * 109.47087 * 185.14194 * 10 9 7 26 26 H 0.97001 * 120.00534 * 358.57928 * 11 10 9 27 27 H 0.97000 * 119.99690 * 0.26490 * 14 12 11 28 28 H 1.08991 * 109.47365 * 299.99596 * 15 14 12 29 29 H 1.08997 * 109.47455 * 60.00030 * 15 14 12 30 30 H 1.08006 * 126.03521 * 0.03198 * 17 16 15 31 31 H 1.08000 * 124.91497 * 179.84278 * 19 18 17 32 32 H 1.09000 * 117.50377 * 215.00150 * 21 9 7 33 33 H 1.09007 * 117.49885 * 0.02562 * 21 9 7 34 34 H 1.08998 * 117.49802 * 359.97438 * 22 9 7 35 35 H 1.09003 * 117.49862 * 144.97562 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0796 -1.1969 -0.1041 9 6 1.2579 -2.4952 0.1433 10 6 0.7052 -3.0859 -1.1553 11 7 1.8164 -3.4580 -2.0344 12 6 1.5680 -4.0284 -3.2299 13 8 0.4216 -4.2347 -3.5787 14 7 2.5902 -4.3657 -4.0412 15 6 2.3199 -4.9803 -5.3432 16 6 3.6227 -5.2568 -6.0483 17 6 4.2407 -6.4402 -5.9875 18 16 5.7158 -6.3316 -6.9450 19 6 5.3590 -4.7032 -7.3253 20 7 4.2494 -4.3496 -6.7701 21 6 1.7443 -3.4742 1.2138 22 6 0.4384 -2.7022 1.4186 23 1 -0.4850 0.8367 -0.0742 24 1 0.0797 -2.3455 -1.6539 25 1 0.1102 -3.9703 -0.9278 26 1 2.7310 -3.2937 -1.7562 27 1 3.5047 -4.2013 -3.7628 28 1 1.7792 -5.9155 -5.1983 29 1 1.7172 -4.3020 -5.9472 30 1 3.8963 -7.3099 -5.4476 31 1 5.9736 -4.0633 -7.9412 32 1 1.6705 -4.5390 0.9930 33 1 2.6041 -3.1769 1.8144 34 1 0.4396 -1.8975 2.1538 35 1 -0.4947 -3.2589 1.3324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331538851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:38 Heat of formation + Delta-G solvation = 18.913638 kcal Electronic energy + Delta-G solvation = -19004.797304 eV Core-core repulsion = 15936.755595 eV Total energy + Delta-G solvation = -3068.041709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.24707 -40.50546 -38.53818 -35.74209 -34.92700 -33.95217 -31.80392 -28.64138 -27.61443 -26.65009 -25.34009 -22.95659 -21.82952 -21.22191 -20.73310 -19.56097 -18.87064 -18.01462 -17.23038 -16.80213 -16.63887 -16.30959 -15.81488 -15.52445 -15.26615 -14.81511 -14.43635 -14.37639 -14.10475 -13.96362 -13.51495 -13.38470 -12.90630 -12.83910 -12.36498 -12.33263 -12.02120 -11.53344 -11.33895 -10.84138 -10.62204 -10.45634 -10.44286 -10.32846 -10.04275 -9.88807 -9.59988 -8.08581 -6.21505 -0.26453 0.46173 0.75020 1.42192 1.44340 1.45070 1.52823 2.12543 2.25685 2.43274 3.19509 3.20692 3.37872 3.64917 3.97588 4.17009 4.27082 4.43421 4.56006 4.58488 4.67996 4.73841 4.76610 5.01198 5.04462 5.05537 5.29408 5.43645 5.60813 5.63512 5.72063 5.79939 6.10634 6.38337 6.76179 6.85264 7.20009 7.47738 7.65960 8.98962 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.003623 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.014031 B = 7726.500148 C = 8332.860877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.949 3.051 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.005 3.995 10 C 0.199 3.801 11 N -0.714 5.714 12 C 0.699 3.301 13 O -0.643 6.643 14 N -0.729 5.729 15 C 0.220 3.780 16 C 0.028 3.972 17 C -0.233 4.233 18 S 0.185 5.815 19 C 0.014 3.986 20 N -0.501 5.501 21 C -0.175 4.175 22 C -0.158 4.158 23 H 0.258 0.742 24 H 0.025 0.975 25 H 0.035 0.965 26 H 0.406 0.594 27 H 0.406 0.594 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.200 0.800 31 H 0.227 0.773 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.413 -13.922 -12.314 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.004 3.996 10 C 0.075 3.925 11 N -0.367 5.367 12 C 0.398 3.602 13 O -0.526 6.526 14 N -0.386 5.386 15 C 0.093 3.907 16 C -0.104 4.104 17 C -0.374 4.374 18 S 0.438 5.562 19 C -0.284 4.284 20 N -0.215 5.215 21 C -0.212 4.212 22 C -0.196 4.196 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.241 0.759 27 H 0.242 0.758 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.217 0.783 31 H 0.243 0.757 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.852 -14.094 -12.911 23.606 hybrid contribution -0.180 1.680 0.629 1.803 sum 13.673 -12.414 -12.281 22.178 Atomic orbital electron populations 1.70098 1.07251 1.27294 1.49850 1.25695 0.95447 1.02039 0.94417 0.85702 0.79035 0.79936 0.77840 1.20873 1.21451 1.18685 1.20653 0.93068 0.89636 1.50837 0.91923 1.19049 0.99827 0.94462 0.86276 1.20414 0.86906 0.95271 0.89955 1.44906 1.11018 1.63873 1.16926 1.16116 0.84582 0.78579 0.80877 1.90847 1.21851 1.63519 1.76405 1.44867 1.08186 1.67293 1.18222 1.19423 0.91304 0.98538 0.81445 1.20058 0.99079 0.90168 1.01118 1.27308 0.99750 1.03299 1.06996 1.83890 1.19923 1.10544 1.41800 1.28944 0.96677 0.99372 1.03394 1.66120 1.08837 1.35802 1.10790 1.23005 0.97348 0.96284 1.04546 1.22435 0.93797 1.01402 1.02003 0.93247 0.95699 0.94660 0.75895 0.75850 0.89292 0.92395 0.78307 0.75715 0.89216 0.89555 0.91774 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.12 12.91 21.45 0.28 -51.84 16 2 C 0.02 1.33 5.39 84.65 0.46 1.79 16 3 Si 0.95 42.87 29.55 68.60 2.03 44.89 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.50 -26.03 8.63 25.60 0.22 -25.81 16 8 H 0.06 3.12 7.82 -2.91 -0.02 3.09 16 9 C 0.00 0.22 1.38 -52.92 -0.07 0.15 16 10 C 0.20 9.40 5.50 86.38 0.48 9.88 16 11 N -0.71 -28.52 5.48 -478.55 -2.62 -31.14 16 12 C 0.70 27.64 8.57 179.05 1.53 29.17 16 13 O -0.64 -30.85 16.34 -4.01 -0.07 -30.92 16 14 N -0.73 -21.68 5.55 -482.30 -2.68 -24.36 16 15 C 0.22 5.86 6.11 85.63 0.52 6.38 16 16 C 0.03 0.60 6.11 41.52 0.25 0.85 16 17 C -0.23 -3.51 11.12 66.78 0.74 -2.77 16 18 S 0.19 1.98 23.22 -56.49 -1.31 0.67 16 19 C 0.01 0.20 12.23 130.66 1.60 1.80 16 20 N -0.50 -11.37 10.53 -191.55 -2.02 -13.38 16 21 C -0.17 -6.92 9.96 30.62 0.30 -6.62 16 22 C -0.16 -7.23 9.41 30.62 0.29 -6.94 16 23 H 0.26 14.36 8.32 -92.71 -0.77 13.58 16 24 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 1.64 8.09 -2.39 -0.02 1.62 16 26 H 0.41 14.40 8.38 -92.71 -0.78 13.62 16 27 H 0.41 10.21 8.48 -92.71 -0.79 9.42 16 28 H 0.09 2.20 8.10 -2.39 -0.02 2.18 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.23 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 34 H 0.06 3.15 8.14 -2.39 -0.02 3.14 16 35 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -69.56 323.46 -0.51 -70.07 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: -0.44 Total: 28.14 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 6.32 Total: 7.87 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -7.04 Total: -120.72 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.07 Total: -30.92 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -1.31 Total: 0.67 kcal Total: -69.56 -0.51 -70.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331538851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.979 kcal (2) G-P(sol) polarization free energy of solvation -69.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds