Wall clock time and date at job start Tue Mar 31 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99813 * 2 1 4 4 H 1.48493 * 109.46771 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47214 * 300.00523 * 3 2 1 6 6 H 1.48502 * 109.46591 * 60.00408 * 3 2 1 7 7 C 1.37875 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99716 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46900 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47001 * 180.02562 * 10 9 7 12 12 O 1.21290 * 120.00146 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99971 * 180.02562 * 11 10 9 14 14 C 1.46537 * 124.97744 * 180.02562 * 13 11 10 15 15 C 1.53740 * 105.20132 * 179.74235 * 14 13 11 16 16 C 1.51218 * 104.58182 * 0.33309 * 15 14 13 17 17 C 1.38578 * 108.55818 * 359.65498 * 16 15 14 18 18 C 1.39570 * 119.08715 * 180.24759 * 17 16 15 19 19 C 1.38121 * 120.31745 * 359.97438 * 18 17 16 20 20 F 1.35099 * 119.89894 * 180.02562 * 19 18 17 21 21 C 1.38439 * 120.19536 * 0.02562 * 19 18 17 22 22 C 1.38385 * 130.94828 * 179.97438 * 16 15 14 23 23 F 1.35101 * 119.93143 * 359.69032 * 22 16 15 24 24 H 0.96996 * 119.99859 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47297 * 60.01036 * 9 7 2 26 26 H 1.08991 * 109.47522 * 300.00423 * 9 7 2 27 27 H 1.09002 * 109.47366 * 60.00327 * 10 9 7 28 28 H 1.09005 * 109.47229 * 300.00297 * 10 9 7 29 29 H 1.08997 * 110.29323 * 298.89622 * 14 13 11 30 30 H 1.09000 * 110.29593 * 60.93416 * 14 13 11 31 31 H 1.08999 * 110.48630 * 241.52278 * 15 14 13 32 32 H 1.09002 * 110.33733 * 119.07225 * 15 14 13 33 33 H 1.08001 * 119.84544 * 179.97438 * 18 17 16 34 34 H 1.08001 * 120.11271 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 8 0.2790 -4.9672 -0.0021 13 7 2.1658 -6.1343 -0.0008 14 6 1.5460 -7.4622 -0.0018 15 6 2.7199 -8.4550 -0.0075 16 6 3.9556 -7.5834 -0.0007 17 6 3.5589 -6.2556 -0.0001 18 6 4.5332 -5.2564 0.0004 19 6 5.8737 -5.5896 0.0010 20 9 6.8097 -4.6154 0.0021 21 6 6.2607 -6.9187 0.0004 22 6 5.2992 -7.9148 -0.0014 23 9 5.6733 -9.2130 -0.0028 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8895 27 1 2.8720 -3.6043 0.8895 28 1 2.8721 -3.6042 -0.8905 29 1 0.9375 -7.5960 0.8925 30 1 0.9370 -7.5945 -0.8961 31 1 2.6941 -9.0711 -0.9063 32 1 2.6911 -9.0808 0.8845 33 1 4.2378 -4.2176 0.0005 34 1 7.3092 -7.1778 0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336028806.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:32 Heat of formation + Delta-G solvation = -95.063168 kcal Electronic energy + Delta-G solvation = -21433.558718 eV Core-core repulsion = 17774.441466 eV Total energy + Delta-G solvation = -3659.117252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.20700 -49.08994 -41.22168 -38.59140 -36.13068 -33.79954 -32.79891 -30.91007 -29.98199 -28.90069 -26.14259 -23.80539 -23.50811 -22.25410 -20.88195 -19.97304 -17.91355 -17.64082 -16.69557 -16.68659 -16.27851 -15.96519 -15.83789 -15.45865 -15.43300 -14.80749 -14.59012 -14.52184 -14.11725 -13.55246 -12.98660 -12.81053 -12.44864 -12.34683 -12.23082 -11.98166 -11.92172 -11.90102 -11.05159 -11.00553 -10.60456 -10.30305 -10.12579 -9.85134 -9.48466 -9.17014 -8.85759 -8.40227 -8.09237 -6.03598 -4.08701 0.74188 0.78778 2.61305 2.71001 3.28492 3.29538 3.37136 3.40514 3.71942 4.01804 4.16656 4.18635 4.42324 4.67115 4.75773 4.83123 4.99962 5.21845 5.32108 5.39888 5.44622 5.57681 5.62426 5.64558 5.74802 5.91554 5.93803 5.94294 6.16346 6.55627 6.66614 7.35168 7.63645 7.69999 7.95270 8.13940 8.33372 8.98476 9.55894 11.07349 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.020397 B = 0.004747 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.401908 B = 5897.041696 C = 7238.274654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.036 3.964 10 C -0.136 4.136 11 C 0.522 3.478 12 O -0.498 6.498 13 N -0.560 5.560 14 C 0.103 3.897 15 C -0.076 4.076 16 C -0.197 4.197 17 C 0.224 3.776 18 C -0.212 4.212 19 C 0.169 3.831 20 F -0.124 7.124 21 C -0.225 4.225 22 C 0.175 3.825 23 F -0.130 7.130 24 H 0.261 0.739 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.168 0.832 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.862 -17.886 -0.006 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.176 4.176 11 C 0.314 3.686 12 O -0.369 6.369 13 N -0.283 5.283 14 C -0.019 4.019 15 C -0.113 4.113 16 C -0.201 4.201 17 C 0.125 3.875 18 C -0.234 4.234 19 C 0.149 3.851 20 F -0.102 7.102 21 C -0.245 4.245 22 C 0.155 3.845 23 F -0.108 7.108 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.186 0.814 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.839 -17.661 -0.007 20.217 hybrid contribution 0.719 0.824 0.000 1.093 sum 10.558 -16.837 -0.007 19.874 Atomic orbital electron populations 1.70001 1.06096 1.26660 1.49959 1.25011 0.94826 0.99312 0.95068 0.86518 0.80088 0.83652 0.77651 1.19607 1.20953 1.20947 1.21192 0.93018 0.90723 1.51788 0.92363 1.18975 0.93082 0.89257 0.98886 1.22315 1.01196 0.91117 1.02935 1.21806 0.88492 0.84355 0.73914 1.90724 1.13850 1.86615 1.45740 1.46493 1.03595 1.07930 1.70254 1.22081 0.95827 0.79972 1.03978 1.21025 0.89152 0.96898 1.04206 1.19898 0.93451 0.94826 1.11972 1.17620 0.84019 0.92574 0.93272 1.21283 0.90065 1.02220 1.09818 1.16713 0.85344 0.84471 0.98567 1.91565 1.63877 1.61432 1.93342 1.20792 1.00789 0.90752 1.12211 1.16335 0.90138 0.78102 0.99900 1.91514 1.92037 1.33748 1.93528 0.92892 0.95570 0.95578 0.89112 0.89119 0.89544 0.89589 0.88843 0.88860 0.81445 0.83172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.53 -14.55 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 0.92 4.26 -27.89 -0.12 0.80 16 10 C -0.14 -2.68 3.46 -27.88 -0.10 -2.78 16 11 C 0.52 9.85 7.80 -10.98 -0.09 9.77 16 12 O -0.50 -11.14 16.27 5.55 0.09 -11.05 16 13 N -0.56 -8.32 3.13 -112.91 -0.35 -8.67 16 14 C 0.10 1.18 7.06 -3.64 -0.03 1.15 16 15 C -0.08 -0.68 6.93 -27.24 -0.19 -0.87 16 16 C -0.20 -2.22 6.21 -104.19 -0.65 -2.87 16 17 C 0.22 2.98 6.59 -83.58 -0.55 2.43 16 18 C -0.21 -2.80 8.85 -39.13 -0.35 -3.14 16 19 C 0.17 2.03 7.28 -39.55 -0.29 1.74 16 20 F -0.12 -1.56 17.26 2.25 0.04 -1.52 16 21 C -0.22 -2.33 10.02 -39.43 -0.39 -2.72 16 22 C 0.18 1.87 7.29 -39.45 -0.29 1.59 16 23 F -0.13 -1.34 17.26 2.25 0.04 -1.30 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.03 0.74 8.10 -51.93 -0.42 0.31 16 27 H 0.09 1.64 6.91 -51.93 -0.36 1.28 16 28 H 0.09 1.64 6.91 -51.93 -0.36 1.28 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.17 2.35 4.20 -52.49 -0.22 2.13 16 34 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 299.29 15.07 4.51 4.51 Total: -1.00 -31.80 299.29 -6.84 -38.63 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -3.43 Total: -2.64 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -3.44 Total: -8.17 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.38 Total: -34.73 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.08 Total: -2.83 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.80 -6.84 -38.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336028806.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.430 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds