Wall clock time and date at job start Tue Mar 31 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99813 * 2 1 4 4 H 1.48493 * 109.46771 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47214 * 300.00523 * 3 2 1 6 6 H 1.48502 * 109.46591 * 60.00408 * 3 2 1 7 7 C 1.37875 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99716 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46900 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47001 * 180.02562 * 10 9 7 12 12 O 1.21290 * 120.00146 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99971 * 180.02562 * 11 10 9 14 14 C 1.46537 * 124.97744 * 180.02562 * 13 11 10 15 15 C 1.53740 * 105.20132 * 179.74235 * 14 13 11 16 16 C 1.51218 * 104.58182 * 0.33309 * 15 14 13 17 17 C 1.38578 * 108.55818 * 359.65498 * 16 15 14 18 18 C 1.39570 * 119.08715 * 180.24759 * 17 16 15 19 19 C 1.38121 * 120.31745 * 359.97438 * 18 17 16 20 20 F 1.35099 * 119.89894 * 180.02562 * 19 18 17 21 21 C 1.38439 * 120.19536 * 0.02562 * 19 18 17 22 22 C 1.38385 * 130.94828 * 179.97438 * 16 15 14 23 23 F 1.35101 * 119.93143 * 359.69032 * 22 16 15 24 24 H 0.96996 * 119.99859 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47297 * 60.01036 * 9 7 2 26 26 H 1.08991 * 109.47522 * 300.00423 * 9 7 2 27 27 H 1.09002 * 109.47366 * 60.00327 * 10 9 7 28 28 H 1.09005 * 109.47229 * 300.00297 * 10 9 7 29 29 H 1.08997 * 110.29323 * 298.89622 * 14 13 11 30 30 H 1.09000 * 110.29593 * 60.93416 * 14 13 11 31 31 H 1.08999 * 110.48630 * 241.52278 * 15 14 13 32 32 H 1.09002 * 110.33733 * 119.07225 * 15 14 13 33 33 H 1.08001 * 119.84544 * 179.97438 * 18 17 16 34 34 H 1.08001 * 120.11271 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 8 0.2790 -4.9672 -0.0021 13 7 2.1658 -6.1343 -0.0008 14 6 1.5460 -7.4622 -0.0018 15 6 2.7199 -8.4550 -0.0075 16 6 3.9556 -7.5834 -0.0007 17 6 3.5589 -6.2556 -0.0001 18 6 4.5332 -5.2564 0.0004 19 6 5.8737 -5.5896 0.0010 20 9 6.8097 -4.6154 0.0021 21 6 6.2607 -6.9187 0.0004 22 6 5.2992 -7.9148 -0.0014 23 9 5.6733 -9.2130 -0.0028 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8895 27 1 2.8720 -3.6043 0.8895 28 1 2.8721 -3.6042 -0.8905 29 1 0.9375 -7.5960 0.8925 30 1 0.9370 -7.5945 -0.8961 31 1 2.6941 -9.0711 -0.9063 32 1 2.6911 -9.0808 0.8845 33 1 4.2378 -4.2176 0.0005 34 1 7.3092 -7.1778 0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336028806.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:32 Heat of formation + Delta-G solvation = -113.356944 kcal Electronic energy + Delta-G solvation = -21434.351995 eV Core-core repulsion = 17774.441466 eV Total energy + Delta-G solvation = -3659.910529 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.04948 -50.02539 -42.34003 -39.92828 -37.18797 -35.72297 -34.16634 -32.62861 -30.99484 -29.84907 -27.98616 -25.18594 -24.47326 -23.54071 -22.19897 -21.22420 -19.30239 -18.60489 -18.28316 -17.73266 -17.39199 -17.26212 -16.86491 -16.61194 -16.44111 -16.37681 -15.83654 -15.80712 -15.29694 -14.85169 -14.37630 -14.19784 -13.91896 -13.50513 -13.29779 -13.21119 -12.99225 -12.86584 -12.81715 -12.62623 -12.39106 -12.07618 -11.62011 -11.35032 -11.27347 -11.10064 -10.60008 -9.77115 -9.12532 -8.20956 -6.34786 -0.20669 -0.16461 1.35833 1.41580 1.42793 1.47477 1.56646 2.28048 2.40719 2.77746 3.06459 3.12928 3.23117 3.29690 3.65651 3.86298 4.02224 4.05439 4.10411 4.28020 4.31835 4.48462 4.56438 4.68511 4.79888 4.85058 4.88669 4.91387 5.03976 5.13157 5.44434 5.52474 5.63808 5.78908 6.08289 6.12002 6.75034 6.85368 7.35736 8.91863 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.020397 B = 0.004747 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.401908 B = 5897.041696 C = 7238.274654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.971 3.029 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.042 3.958 10 C -0.124 4.124 11 C 0.525 3.475 12 O -0.547 6.547 13 N -0.556 5.556 14 C 0.094 3.906 15 C -0.067 4.067 16 C -0.183 4.183 17 C 0.195 3.805 18 C -0.219 4.219 19 C 0.161 3.839 20 F -0.129 7.129 21 C -0.203 4.203 22 C 0.177 3.823 23 F -0.123 7.123 24 H 0.264 0.736 25 H -0.012 1.012 26 H -0.012 1.012 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.155 0.845 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.712 -19.392 -0.007 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.004 3.996 10 C -0.163 4.163 11 C 0.317 3.683 12 O -0.424 6.424 13 N -0.279 5.279 14 C -0.026 4.026 15 C -0.104 4.104 16 C -0.187 4.187 17 C 0.098 3.902 18 C -0.240 4.240 19 C 0.141 3.859 20 F -0.107 7.107 21 C -0.224 4.224 22 C 0.157 3.843 23 F -0.101 7.101 24 H 0.072 0.928 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.172 0.828 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 12.762 -19.220 -0.008 23.071 hybrid contribution -0.084 1.169 0.000 1.172 sum 12.678 -18.051 -0.008 22.058 Atomic orbital electron populations 1.70165 1.08205 1.27835 1.51296 1.26065 0.95683 1.03741 0.94495 0.85313 0.79333 0.78258 0.77621 1.17737 1.20576 1.20565 1.21666 0.93964 0.91391 1.51043 0.90658 1.18736 0.93540 0.92009 0.95270 1.22066 0.99742 0.89836 1.04613 1.21390 0.87715 0.85397 0.73770 1.90700 1.15587 1.87448 1.48633 1.46227 1.04547 1.07860 1.69262 1.22376 0.97074 0.78680 1.04459 1.21134 0.86518 0.96125 1.06581 1.20106 0.94485 0.94240 1.09896 1.17707 0.83044 0.93714 0.95725 1.21235 0.90914 1.01693 1.10159 1.16719 0.84719 0.85080 0.99403 1.91556 1.63874 1.61797 1.93485 1.21042 1.02150 0.89742 1.09440 1.16267 0.89801 0.78433 0.99788 1.91543 1.91908 1.33216 1.93430 0.92759 0.99331 0.99336 0.87374 0.87382 0.89187 0.89237 0.86406 0.86411 0.82790 0.80572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.41 13.29 21.45 0.28 -58.13 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 4 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.04 2.30 4.26 29.85 0.13 2.43 16 10 C -0.12 -5.00 3.46 29.85 0.10 -4.90 16 11 C 0.52 20.48 7.80 87.66 0.68 21.16 16 12 O -0.55 -25.92 16.27 -3.06 -0.05 -25.97 16 13 N -0.56 -16.30 3.13 -629.52 -1.97 -18.27 16 14 C 0.09 2.03 7.06 86.62 0.61 2.64 16 15 C -0.07 -0.98 6.93 30.26 0.21 -0.77 16 16 C -0.18 -3.57 6.21 -19.58 -0.12 -3.70 16 17 C 0.20 4.89 6.59 38.27 0.25 5.14 16 18 C -0.22 -5.48 8.85 22.56 0.20 -5.28 16 19 C 0.16 3.49 7.28 22.29 0.16 3.66 16 20 F -0.13 -3.00 17.26 44.97 0.78 -2.22 16 21 C -0.20 -3.50 10.02 22.37 0.22 -3.28 16 22 C 0.18 3.13 7.29 22.36 0.16 3.29 16 23 F -0.12 -2.02 17.26 44.97 0.78 -1.24 16 24 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 25 H -0.01 -0.72 8.10 -2.39 -0.02 -0.74 16 26 H -0.01 -0.72 8.10 -2.39 -0.02 -0.74 16 27 H 0.11 3.95 6.91 -2.39 -0.02 3.94 16 28 H 0.11 3.95 6.91 -2.38 -0.02 3.93 16 29 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.15 4.24 4.20 -2.91 -0.01 4.22 16 34 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -71.75 299.29 6.30 -65.45 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.14 Total: 3.87 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 3.31 Total: -9.46 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -1.68 Total: -76.39 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 1.55 Total: -3.47 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.75 6.30 -65.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336028806.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.905 kcal (2) G-P(sol) polarization free energy of solvation -71.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds