Wall clock time and date at job start Tue Mar 31 2020 05:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47397 * 45.55791 * 3 2 1 5 5 C 1.36809 * 120.00026 * 270.28140 * 4 3 2 6 6 H 1.08008 * 119.99626 * 194.15841 * 5 4 3 7 7 C 1.39078 * 120.00301 * 14.16152 * 5 4 3 8 8 N 1.31341 * 119.99756 * 10.42728 * 7 5 4 9 9 Si 1.86793 * 120.00203 * 190.43080 * 7 5 4 10 10 H 1.48504 * 109.47379 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47143 * 119.99524 * 9 7 5 12 12 H 1.48496 * 109.47450 * 240.00107 * 9 7 5 13 13 C 1.34776 * 120.00049 * 90.27853 * 4 3 2 14 14 O 1.21650 * 119.99922 * 4.27229 * 13 4 3 15 15 C 1.47277 * 120.00421 * 184.26729 * 13 4 3 16 16 C 1.38854 * 120.33832 * 52.32777 * 15 13 4 17 17 C 1.38824 * 120.71624 * 179.78679 * 16 15 13 18 18 C 1.36377 * 121.06872 * 0.49693 * 17 16 15 19 19 C 1.40444 * 120.09903 * 359.74296 * 18 17 16 20 20 C 1.40806 * 121.25380 * 179.97438 * 19 18 17 21 21 C 1.36646 * 118.15273 * 180.02562 * 20 19 18 22 22 C 1.39224 * 119.90300 * 359.97438 * 21 20 19 23 23 N 1.31246 * 121.69336 * 0.03018 * 22 21 20 24 24 C 1.33316 * 121.35710 * 359.95482 * 23 22 21 25 25 H 1.09004 * 109.47275 * 285.56349 * 3 2 1 26 26 H 1.08998 * 109.47553 * 165.56270 * 3 2 1 27 27 H 0.97003 * 120.00319 * 179.97438 * 8 7 5 28 28 H 1.07999 * 119.64081 * 0.02562 * 16 15 13 29 29 H 1.08005 * 119.46672 * 180.28331 * 17 16 15 30 30 H 1.08004 * 119.95313 * 179.76874 * 18 17 16 31 31 H 1.07995 * 120.92597 * 359.97438 * 20 19 18 32 32 H 1.07996 * 120.04818 * 179.97438 * 21 20 19 33 33 H 1.07997 * 119.15112 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9662 -0.9861 5 6 3.3200 -2.2649 -0.6184 6 1 3.8878 -2.9189 -1.2637 7 6 2.8156 -2.7431 0.5863 8 7 1.9591 -2.0214 1.2723 9 14 3.3565 -4.4115 1.2289 10 1 4.3207 -5.0197 0.2771 11 1 4.0075 -4.2447 2.5531 12 1 2.1721 -5.2964 1.3674 13 6 3.3266 -0.5763 -2.2556 14 8 3.2030 0.5938 -2.5643 15 6 3.7276 -1.5668 -3.2691 16 6 2.9775 -2.7200 -3.4581 17 6 3.3458 -3.6567 -4.4141 18 6 4.4562 -3.4764 -5.1850 19 6 5.2465 -2.3266 -5.0237 20 6 6.3981 -2.1160 -5.8061 21 6 7.1206 -0.9755 -5.5958 22 6 6.7093 -0.0615 -4.6294 23 7 5.6350 -0.2628 -3.9029 24 6 4.8865 -1.3549 -4.0590 25 1 2.9715 -0.2749 0.9900 26 1 2.9709 0.9960 -0.2562 27 1 1.6070 -2.3549 2.1124 28 1 2.0959 -2.8881 -2.8573 29 1 2.7450 -4.5444 -4.5473 30 1 4.7281 -4.2186 -5.9210 31 1 6.7023 -2.8363 -6.5510 32 1 8.0095 -0.7833 -6.1784 33 1 7.2898 0.8357 -4.4731 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339232658.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:32 Heat of formation + Delta-G solvation = 68.748964 kcal Electronic energy + Delta-G solvation = -21139.502490 eV Core-core repulsion = 17938.177852 eV Total energy + Delta-G solvation = -3201.324638 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.59139 -38.68577 -36.56587 -35.54466 -34.33844 -33.12056 -31.66703 -30.28797 -29.99502 -27.43964 -25.05656 -24.05130 -23.19920 -22.40438 -19.48974 -18.22969 -18.02106 -16.87280 -16.46716 -16.08994 -15.79394 -14.55838 -14.48766 -14.43807 -14.02559 -13.81782 -13.57142 -12.96322 -12.86544 -12.65895 -12.58384 -11.98983 -11.74977 -11.44248 -11.39982 -11.27454 -11.16513 -11.00615 -10.61276 -10.48128 -10.29659 -10.14945 -9.39439 -9.22144 -8.63449 -8.49894 -8.15469 -7.83585 -6.54912 -4.11005 0.56886 1.10789 2.15542 3.01671 3.13262 3.16783 3.17781 3.71728 3.77941 4.05096 4.29887 4.43577 4.59130 4.68543 4.84779 4.90885 5.03381 5.11096 5.15203 5.37056 5.47689 5.60760 5.64147 5.83594 6.05880 6.13368 6.26552 6.31947 6.50547 6.66124 6.72668 6.76712 6.83943 7.12428 7.24028 7.42833 8.17502 8.29747 8.87280 8.99487 9.23333 9.64639 10.45975 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.006627 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.218390 B = 4224.367490 C = 4948.333891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.266 3.734 3 C 0.230 3.770 4 N -0.436 5.436 5 C -0.329 4.329 6 H 0.106 0.894 7 C 0.036 3.964 8 N -0.876 5.876 9 Si 0.928 3.072 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.511 3.489 14 O -0.573 6.573 15 C -0.055 4.055 16 C -0.062 4.062 17 C -0.114 4.114 18 C -0.103 4.103 19 C -0.107 4.107 20 C -0.063 4.063 21 C -0.181 4.181 22 C 0.120 3.880 23 N -0.444 5.444 24 C 0.153 3.847 25 H 0.134 0.866 26 H 0.087 0.913 27 H 0.275 0.725 28 H 0.142 0.858 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.911 -4.239 -9.486 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.051 4.051 3 C 0.104 3.896 4 N -0.155 5.155 5 C -0.457 4.457 6 H 0.124 0.876 7 C -0.168 4.168 8 N -0.515 5.515 9 Si 0.754 3.246 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.300 3.700 14 O -0.457 6.457 15 C -0.059 4.059 16 C -0.082 4.082 17 C -0.132 4.132 18 C -0.122 4.122 19 C -0.109 4.109 20 C -0.089 4.089 21 C -0.201 4.201 22 C -0.053 4.053 23 N -0.151 5.151 24 C 0.030 3.970 25 H 0.151 0.849 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.160 0.840 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.718 -3.105 -8.728 12.057 hybrid contribution 0.929 -1.750 -0.158 1.987 sum 8.646 -4.855 -8.886 13.315 Atomic orbital electron populations 1.80844 1.13732 1.12082 1.10734 1.29152 0.95209 0.89892 0.90892 1.18687 0.81467 0.92982 0.96465 1.43482 1.56174 1.09606 1.06236 1.19851 1.33347 0.86857 1.05624 0.87637 1.25275 0.94947 0.99870 0.96740 1.69743 1.27549 1.38181 1.16053 0.85821 0.78585 0.81052 0.79108 1.19141 1.20298 1.20622 1.17666 0.82748 0.87581 0.82015 1.90691 1.57180 1.17748 1.80075 1.19867 0.93942 0.95388 0.96704 1.21506 0.99669 0.91176 0.95892 1.20857 0.97122 0.99454 0.95728 1.20947 0.95173 0.96231 0.99848 1.18755 0.97208 0.96636 0.98347 1.21377 0.93124 0.97095 0.97343 1.21824 1.01611 0.95974 1.00725 1.22984 0.92728 0.98419 0.91203 1.68075 1.04275 1.19037 1.23720 1.18678 0.94187 0.90169 0.93944 0.84851 0.89503 0.91328 0.84042 0.85415 0.85631 0.84834 0.85016 0.82796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.79 18.54 42.16 0.78 -12.01 16 2 C 0.27 6.56 13.43 -20.76 -0.28 6.29 16 3 C 0.23 5.25 5.21 -6.83 -0.04 5.22 16 4 N -0.44 -10.43 2.58 -119.22 -0.31 -10.74 16 5 C -0.33 -7.73 8.19 -15.02 -0.12 -7.85 16 6 H 0.11 2.41 5.95 -52.48 -0.31 2.10 16 7 C 0.04 0.83 5.19 -17.45 -0.09 0.74 16 8 N -0.88 -21.32 8.52 55.50 0.47 -20.85 16 9 Si 0.93 18.50 29.57 -169.99 -5.03 13.47 16 10 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 11 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 12 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 13 C 0.51 12.38 6.82 -12.59 -0.09 12.30 16 14 O -0.57 -15.22 16.26 5.23 0.09 -15.14 16 15 C -0.06 -1.17 4.78 -104.62 -0.50 -1.67 16 16 C -0.06 -1.14 7.82 -39.14 -0.31 -1.44 16 17 C -0.11 -1.65 9.93 -40.04 -0.40 -2.05 16 18 C -0.10 -1.39 9.75 -39.42 -0.38 -1.77 16 19 C -0.11 -1.68 5.74 -106.82 -0.61 -2.29 16 20 C -0.06 -0.77 9.90 -39.19 -0.39 -1.16 16 21 C -0.18 -2.13 10.03 -39.79 -0.40 -2.52 16 22 C 0.12 1.75 11.15 -17.44 -0.19 1.55 16 23 N -0.44 -8.71 9.51 -10.75 -0.10 -8.81 16 24 C 0.15 2.99 6.60 -84.57 -0.56 2.43 16 25 H 0.13 2.99 6.25 -51.93 -0.32 2.67 16 26 H 0.09 1.86 7.36 -51.93 -0.38 1.48 16 27 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.14 2.70 7.53 -52.49 -0.40 2.30 16 29 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 30 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 296.49 15.07 4.47 4.47 Total: -1.00 -31.23 296.49 -6.65 -37.88 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -2.66 Total: 3.97 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -4.35 Total: 7.76 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.84 Total: -52.41 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.09 Total: -15.14 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.23 -6.65 -37.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339232658.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.627 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds