Wall clock time and date at job start Tue Mar 31 2020 05:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47397 * 45.55791 * 3 2 1 5 5 C 1.36809 * 120.00026 * 270.28140 * 4 3 2 6 6 H 1.08008 * 119.99626 * 194.15841 * 5 4 3 7 7 C 1.39078 * 120.00301 * 14.16152 * 5 4 3 8 8 N 1.31341 * 119.99756 * 10.42728 * 7 5 4 9 9 Si 1.86793 * 120.00203 * 190.43080 * 7 5 4 10 10 H 1.48504 * 109.47379 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47143 * 119.99524 * 9 7 5 12 12 H 1.48496 * 109.47450 * 240.00107 * 9 7 5 13 13 C 1.34776 * 120.00049 * 90.27853 * 4 3 2 14 14 O 1.21650 * 119.99922 * 4.27229 * 13 4 3 15 15 C 1.47277 * 120.00421 * 184.26729 * 13 4 3 16 16 C 1.38854 * 120.33832 * 52.32777 * 15 13 4 17 17 C 1.38824 * 120.71624 * 179.78679 * 16 15 13 18 18 C 1.36377 * 121.06872 * 0.49693 * 17 16 15 19 19 C 1.40444 * 120.09903 * 359.74296 * 18 17 16 20 20 C 1.40806 * 121.25380 * 179.97438 * 19 18 17 21 21 C 1.36646 * 118.15273 * 180.02562 * 20 19 18 22 22 C 1.39224 * 119.90300 * 359.97438 * 21 20 19 23 23 N 1.31246 * 121.69336 * 0.03018 * 22 21 20 24 24 C 1.33316 * 121.35710 * 359.95482 * 23 22 21 25 25 H 1.09004 * 109.47275 * 285.56349 * 3 2 1 26 26 H 1.08998 * 109.47553 * 165.56270 * 3 2 1 27 27 H 0.97003 * 120.00319 * 179.97438 * 8 7 5 28 28 H 1.07999 * 119.64081 * 0.02562 * 16 15 13 29 29 H 1.08005 * 119.46672 * 180.28331 * 17 16 15 30 30 H 1.08004 * 119.95313 * 179.76874 * 18 17 16 31 31 H 1.07995 * 120.92597 * 359.97438 * 20 19 18 32 32 H 1.07996 * 120.04818 * 179.97438 * 21 20 19 33 33 H 1.07997 * 119.15112 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9662 -0.9861 5 6 3.3200 -2.2649 -0.6184 6 1 3.8878 -2.9189 -1.2637 7 6 2.8156 -2.7431 0.5863 8 7 1.9591 -2.0214 1.2723 9 14 3.3565 -4.4115 1.2289 10 1 4.3207 -5.0197 0.2771 11 1 4.0075 -4.2447 2.5531 12 1 2.1721 -5.2964 1.3674 13 6 3.3266 -0.5763 -2.2556 14 8 3.2030 0.5938 -2.5643 15 6 3.7276 -1.5668 -3.2691 16 6 2.9775 -2.7200 -3.4581 17 6 3.3458 -3.6567 -4.4141 18 6 4.4562 -3.4764 -5.1850 19 6 5.2465 -2.3266 -5.0237 20 6 6.3981 -2.1160 -5.8061 21 6 7.1206 -0.9755 -5.5958 22 6 6.7093 -0.0615 -4.6294 23 7 5.6350 -0.2628 -3.9029 24 6 4.8865 -1.3549 -4.0590 25 1 2.9715 -0.2749 0.9900 26 1 2.9709 0.9960 -0.2562 27 1 1.6070 -2.3549 2.1124 28 1 2.0959 -2.8881 -2.8573 29 1 2.7450 -4.5444 -4.5473 30 1 4.7281 -4.2186 -5.9210 31 1 6.7023 -2.8363 -6.5510 32 1 8.0095 -0.7833 -6.1784 33 1 7.2898 0.8357 -4.4731 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339232658.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:32 Heat of formation + Delta-G solvation = 49.509654 kcal Electronic energy + Delta-G solvation = -21140.336770 eV Core-core repulsion = 17938.177852 eV Total energy + Delta-G solvation = -3202.158917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.82785 -40.37373 -37.80611 -37.43810 -36.29144 -34.30272 -33.48935 -31.45103 -31.28842 -29.18602 -26.81854 -25.24933 -24.34994 -23.76926 -21.14796 -19.90543 -19.21573 -18.38525 -17.96215 -17.63873 -17.16420 -16.36208 -16.03804 -15.65381 -15.30682 -15.13669 -15.06155 -14.55758 -14.41274 -14.09614 -13.84088 -13.71588 -13.36806 -13.11751 -12.96129 -12.87074 -12.70125 -12.36074 -12.19155 -12.14240 -12.00187 -11.36389 -11.20689 -10.69481 -10.12982 -10.03299 -9.65155 -9.07577 -8.35038 -5.97300 -0.57081 -0.03361 0.97505 1.43073 1.48883 1.61150 1.82848 1.96959 2.15510 2.27846 2.35445 3.00508 3.05901 3.28814 3.48289 3.67297 3.80920 3.95238 4.04698 4.15810 4.25335 4.33352 4.55400 4.60291 4.70956 4.90139 4.98270 5.05226 5.17647 5.21303 5.39609 5.45100 5.48949 5.60756 5.70571 5.99592 6.35408 6.98994 7.04421 7.17005 7.41358 7.82462 8.65955 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.006627 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.218390 B = 4224.367490 C = 4948.333891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.275 3.725 3 C 0.232 3.768 4 N -0.446 5.446 5 C -0.336 4.336 6 H 0.109 0.891 7 C -0.001 4.001 8 N -0.903 5.903 9 Si 0.993 3.007 10 H -0.257 1.257 11 H -0.276 1.276 12 H -0.285 1.285 13 C 0.506 3.494 14 O -0.612 6.612 15 C -0.110 4.110 16 C -0.061 4.061 17 C -0.126 4.126 18 C -0.071 4.071 19 C -0.127 4.127 20 C -0.049 4.049 21 C -0.174 4.174 22 C 0.117 3.883 23 N -0.513 5.513 24 C 0.126 3.874 25 H 0.138 0.862 26 H 0.095 0.905 27 H 0.274 0.726 28 H 0.120 0.880 29 H 0.163 0.837 30 H 0.179 0.821 31 H 0.184 0.816 32 H 0.179 0.821 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.526 -6.927 -12.152 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.202 5.202 2 C -0.042 4.042 3 C 0.106 3.894 4 N -0.165 5.165 5 C -0.463 4.463 6 H 0.126 0.874 7 C -0.202 4.202 8 N -0.543 5.543 9 Si 0.817 3.183 10 H -0.181 1.181 11 H -0.201 1.201 12 H -0.211 1.211 13 C 0.296 3.704 14 O -0.498 6.498 15 C -0.113 4.113 16 C -0.082 4.082 17 C -0.144 4.144 18 C -0.090 4.090 19 C -0.129 4.129 20 C -0.075 4.075 21 C -0.194 4.194 22 C -0.055 4.055 23 N -0.221 5.221 24 C 0.004 3.996 25 H 0.155 0.845 26 H 0.113 0.887 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.181 0.819 30 H 0.196 0.804 31 H 0.202 0.798 32 H 0.197 0.803 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.345 -5.802 -11.403 16.453 hybrid contribution 0.242 -0.861 0.517 1.033 sum 10.587 -6.663 -10.886 16.582 Atomic orbital electron populations 1.80813 1.14472 1.13124 1.11748 1.29532 0.95592 0.89034 0.90014 1.18764 0.80445 0.93501 0.96704 1.43687 1.56293 1.10019 1.06483 1.20032 1.33500 0.86856 1.05921 0.87360 1.26034 0.94673 1.02928 0.96550 1.69829 1.28537 1.39630 1.16260 0.84845 0.77974 0.77019 0.78490 1.18098 1.20109 1.21077 1.18328 0.81615 0.87905 0.82508 1.90618 1.58705 1.19629 1.80875 1.19772 0.96944 0.96464 0.98163 1.21486 0.98594 0.91377 0.96702 1.21160 0.98437 0.99678 0.95125 1.21538 0.93001 0.95669 0.98758 1.19149 0.99053 0.96531 0.98143 1.21958 0.91012 0.97839 0.96683 1.22275 1.02696 0.94811 0.99582 1.23610 0.91326 0.99756 0.90803 1.67993 1.06732 1.20543 1.26814 1.18837 0.94045 0.91564 0.95105 0.84479 0.88726 0.91528 0.86241 0.81927 0.80382 0.79828 0.80317 0.80712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -28.03 18.54 20.00 0.37 -27.66 16 2 C 0.28 14.21 13.43 89.44 1.20 15.41 16 3 C 0.23 11.17 5.21 84.57 0.44 11.61 16 4 N -0.45 -22.48 2.58 -649.33 -1.67 -24.15 16 5 C -0.34 -16.29 8.19 84.12 0.69 -15.60 16 6 H 0.11 5.10 5.95 -2.91 -0.02 5.08 16 7 C 0.00 -0.05 5.19 84.97 0.44 0.39 16 8 N -0.90 -45.09 8.52 21.68 0.18 -44.90 16 9 Si 0.99 37.99 29.57 68.60 2.03 40.02 16 10 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 11 H -0.28 -10.41 7.11 99.48 0.71 -9.70 16 12 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 13 C 0.51 26.02 6.82 86.62 0.59 26.61 16 14 O -0.61 -34.71 16.26 -4.19 -0.07 -34.78 16 15 C -0.11 -4.85 4.78 -19.86 -0.09 -4.95 16 16 C -0.06 -2.28 7.82 22.56 0.18 -2.11 16 17 C -0.13 -3.36 9.93 21.98 0.22 -3.14 16 18 C -0.07 -1.61 9.75 22.37 0.22 -1.39 16 19 C -0.13 -3.57 5.74 -21.29 -0.12 -3.70 16 20 C -0.05 -0.94 9.90 22.53 0.22 -0.72 16 21 C -0.17 -3.30 10.03 22.13 0.22 -3.08 16 22 C 0.12 3.24 11.15 85.02 0.95 4.19 16 23 N -0.51 -20.47 9.51 -187.93 -1.79 -22.26 16 24 C 0.13 4.97 6.60 40.63 0.27 5.24 16 25 H 0.14 6.46 6.25 -2.38 -0.01 6.44 16 26 H 0.09 4.33 7.36 -2.39 -0.02 4.31 16 27 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 28 H 0.12 4.82 7.53 -2.91 -0.02 4.80 16 29 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 31 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 32 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -73.95 296.49 5.64 -68.31 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 1.16 Total: 16.65 kcal Atomic # 6 Polarization: 23.35 SS G_CDS: 5.42 Total: 28.77 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -2.90 Total: -118.97 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.07 Total: -34.78 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -73.95 5.64 -68.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339232658.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.823 kcal (2) G-P(sol) polarization free energy of solvation -73.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds